Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SV2B Gene

Aliases for SV2B Gene

  • Synaptic Vesicle Glycoprotein 2B 2 3 5
  • Synaptic Vesicle Protein 2B Homolog 3
  • HsT19680 3
  • KIAA0735 4

External Ids for SV2B Gene

Previous GeneCards Identifiers for SV2B Gene

  • GC15P088231
  • GC15P085534
  • GC15P089356
  • GC15P089498
  • GC15P089373
  • GC15P089444
  • GC15P089570
  • GC15P091643
  • GC15P067755

Summaries for SV2B Gene

GeneCards Summary for SV2B Gene

SV2B (Synaptic Vesicle Glycoprotein 2B) is a Protein Coding gene. Diseases associated with SV2B include prostate small cell carcinoma. Among its related pathways are ECM-receptor interaction and Infectious disease. GO annotations related to this gene include transporter activity and transmembrane transporter activity. An important paralog of this gene is SV2C.

UniProtKB/Swiss-Prot for SV2B Gene

  • Probably plays a role in the control of regulated secretion in neural and endocrine cells.

Gene Wiki entry for SV2B Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SV2B Gene

Genomics for SV2B Gene

Regulatory Elements for SV2B Gene

Enhancers for SV2B Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SV2B on UCSC Golden Path with GeneCards custom track

Promoters for SV2B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SV2B on UCSC Golden Path with GeneCards custom track

Genomic Location for SV2B Gene

Chromosome:
15
Start:
91,099,721 bp from pter
End:
91,301,309 bp from pter
Size:
201,589 bases
Orientation:
Plus strand

Genomic View for SV2B Gene

Genes around SV2B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SV2B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SV2B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SV2B Gene

Proteins for SV2B Gene

  • Protein details for SV2B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7L1I2-SV2B_HUMAN
    Recommended name:
    Synaptic vesicle glycoprotein 2B
    Protein Accession:
    Q7L1I2
    Secondary Accessions:
    • B4DH30
    • C6G489
    • O94840
    • Q6IAR8

    Protein attributes for SV2B Gene

    Size:
    683 amino acids
    Molecular mass:
    77444 Da
    Quaternary structure:
    • Interacts with SYT1 in a calcium-independent manner. Forms a complex with SYT1, syntaxin-1 and SNAP25 (By similarity).
    SequenceCaution:
    • Sequence=BAA34455.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for SV2B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SV2B Gene

Proteomics data for SV2B Gene at MOPED

Post-translational modifications for SV2B Gene

No data available for DME Specific Peptides for SV2B Gene

Domains & Families for SV2B Gene

Protein Domains for SV2B Gene

Suggested Antigen Peptide Sequences for SV2B Gene

Graphical View of Domain Structure for InterPro Entry

Q7L1I2

UniProtKB/Swiss-Prot:

SV2B_HUMAN :
  • Belongs to the major facilitator superfamily.
Family:
  • Belongs to the major facilitator superfamily.
genes like me logo Genes that share domains with SV2B: view

No data available for Gene Families for SV2B Gene

Function for SV2B Gene

Molecular function for SV2B Gene

UniProtKB/Swiss-Prot Function:
Probably plays a role in the control of regulated secretion in neural and endocrine cells.
genes like me logo Genes that share phenotypes with SV2B: view

Animal Models for SV2B Gene

MGI Knock Outs for SV2B:

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SV2B Gene

Localization for SV2B Gene

Subcellular locations from UniProtKB/Swiss-Prot for SV2B Gene

Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane; Multi-pass membrane protein. Cytoplasmic vesicle, secretory vesicle, acrosome. Note=Associated with synaptic-like microvesicles but not with insulin-containing vesicles in insulin-secreting cells of the pancreas (By similarity). Localizes to microvesicles in the pinealocytes. Localizes to the acrosome in spermatids (By similarity). {ECO:0000250 UniProtKB:Q63564}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SV2B Gene COMPARTMENTS Subcellular localization image for SV2B gene
Compartment Confidence
plasma membrane 4
peroxisome 2

Gene Ontology (GO) - Cellular Components for SV2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008021 synaptic vesicle TAS 15217342
GO:0030672 synaptic vesicle membrane TAS --
genes like me logo Genes that share ontologies with SV2B: view

Pathways & Interactions for SV2B Gene

genes like me logo Genes that share pathways with SV2B: view

Gene Ontology (GO) - Biological Process for SV2B Gene

None

No data available for SIGNOR curated interactions for SV2B Gene

Drugs & Compounds for SV2B Gene

(1) Drugs for SV2B Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
calcium Nutra 0
genes like me logo Genes that share compounds with SV2B: view

Transcripts for SV2B Gene

Unigene Clusters for SV2B Gene

Synaptic vesicle glycoprotein 2B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SV2B Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13
SP1: -
SP2: -
SP3:

Relevant External Links for SV2B Gene

GeneLoc Exon Structure for
SV2B
ECgene alternative splicing isoforms for
SV2B

Expression for SV2B Gene

mRNA expression in normal human tissues for SV2B Gene

mRNA differential expression in normal tissues according to GTEx for SV2B Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x8.9), Brain - Cortex (x8.2), Brain - Cerebellar Hemisphere (x7.2), Brain - Anterior cingulate cortex (BA24) (x7.1), and Brain - Cerebellum (x5.8).

Protein differential expression in normal tissues from HIPED for SV2B Gene

This gene is overexpressed in Frontal cortex (30.7), Retina (21.9), and Brain (15.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SV2B Gene



SOURCE GeneReport for Unigene cluster for SV2B Gene Hs.21754

genes like me logo Genes that share expression patterns with SV2B: view

Protein tissue co-expression partners for SV2B Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for SV2B Gene

Orthologs for SV2B Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SV2B Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SV2B 35
  • 90.78 (n)
  • 95.02 (a)
SV2B 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SV2B 35
  • 91.9 (n)
  • 95.61 (a)
SV2B 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sv2b 35
  • 89.6 (n)
  • 94.88 (a)
Sv2b 16
Sv2b 36
  • 95 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sv2b 35
  • 89.85 (n)
  • 94.88 (a)
oppossum
(Monodelphis domestica)
Mammalia SV2B 36
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SV2B 36
  • 82 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SV2B 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves SV2B 35
  • 78.25 (n)
  • 81.96 (a)
SV2B 36
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SV2B 36
  • 77 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sv2b 35
  • 71.96 (n)
  • 76.32 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC101883740 35
  • 66.27 (n)
  • 66.27 (a)
SV2B (2 of 3) 36
  • 63 (a)
OneToMany
sv2ba 36
  • 59 (a)
OneToMany
sv2bb 36
  • 63 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG3168 37
  • 33 (a)
CG12783 36
  • 19 (a)
ManyToMany
CG14691 36
  • 20 (a)
ManyToMany
CG15221 36
  • 20 (a)
ManyToMany
CG31103 36
  • 20 (a)
ManyToMany
CG31106 36
  • 23 (a)
ManyToMany
CG31272 36
  • 22 (a)
ManyToMany
CG3168 36
  • 27 (a)
ManyToMany
CG33233 36
  • 20 (a)
ManyToMany
CG33234 36
  • 18 (a)
ManyToMany
CG3690 36
  • 22 (a)
ManyToMany
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAPB1E7.08c 35
  • 41.05 (n)
  • 28.08 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 29 (a)
OneToMany
Species with no ortholog for SV2B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SV2B Gene

ENSEMBL:
Gene Tree for SV2B (if available)
TreeFam:
Gene Tree for SV2B (if available)

Paralogs for SV2B Gene

Paralogs for SV2B Gene

(2) SIMAP similar genes for SV2B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SV2B: view

Variants for SV2B Gene

Sequence variations from dbSNP and Humsavar for SV2B Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs4932520 -- 91,164,437(+) GAATA(C/G)TGTGT intron-variant
rs4932521 -- 91,164,556(+) GGACC(C/T)TAACT intron-variant
rs4932523 -- 91,295,570(+) CCCAG(A/G)TTACA utr-variant-3-prime
rs4932575 -- 91,135,272(+) TATCA(C/T)CCTTT intron-variant
rs4932594 -- 91,156,208(+) GCCTC(A/G)GTAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SV2B Gene

Variant ID Type Subtype PubMed ID
esv26699 CNV Loss 19812545
esv8530 CNV Gain 19470904
nsv904496 CNV Loss 21882294
esv2750021 CNV Deletion 23290073
nsv904497 CNV Gain 21882294
nsv1663 CNV Loss 18451855
esv2011261 CNV Deletion 18987734
esv2750022 CNV Deletion 23290073
esv2750023 CNV Deletion 23290073
dgv778e1 CNV Complex 17122850
nsv833094 CNV Gain 17160897
esv26104 CNV Loss 19812545
esv2750024 CNV Deletion 23290073

Variation tolerance for SV2B Gene

Residual Variation Intolerance Score: 40.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.93; 49.02% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SV2B Gene

HapMap Linkage Disequilibrium report
SV2B
Human Gene Mutation Database (HGMD)
SV2B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SV2B Gene

Disorders for SV2B Gene

MalaCards: The human disease database

(1) MalaCards diseases for SV2B Gene - From: DISEASES

Disorder Aliases PubMed IDs
prostate small cell carcinoma
  • prostate oat cell carcinoma
- elite association - COSMIC cancer census association via MalaCards
Search SV2B in MalaCards View complete list of genes associated with diseases

Relevant External Links for SV2B

Genetic Association Database (GAD)
SV2B
Human Genome Epidemiology (HuGE) Navigator
SV2B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SV2B
genes like me logo Genes that share disorders with SV2B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SV2B Gene

Publications for SV2B Gene

  1. Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 9872452) Nagase T. … Ohara O. (DNA Res. 1998) 2 3 4 67
  2. Brain contains two forms of synaptic vesicle protein 2. (PMID: 7681585) Bajjalieh S.M. … Scheller R.H. (Proc. Natl. Acad. Sci. U.S.A. 1993) 2 3
  3. Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment. (PMID: 24939585) Fransen E. … Friedman R.A. (Eur. J. Hum. Genet. 2015) 3
  4. Expression pattern of synaptic vesicle protein 2 (SV2) isoforms in patients with temporal lobe epilepsy and hippocampal sclerosis. (PMID: 23617838) CrA"vecA9ur J. … Deprez M. (Neuropathol. Appl. Neurobiol. 2014) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for SV2B Gene

Sources for SV2B Gene

Content