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Aliases for SUZ12P1 Gene

Aliases for SUZ12P1 Gene

  • SUZ12 Polycomb Repressive Complex 2 Subunit Pseudogene 1 2 3 5
  • Suppressor Of Zeste 12 Homolog Pseudogene 1 2 3
  • Suppressor Of Zeste 12 Homolog Pseudogene 2
  • SUZ12P 3

External Ids for SUZ12P1 Gene

Previous HGNC Symbols for SUZ12P1 Gene

  • SUZ12P

Previous GeneCards Identifiers for SUZ12P1 Gene

  • GC17P029059
  • GC17P029038
  • GC17P029040

Summaries for SUZ12P1 Gene

GeneCards Summary for SUZ12P1 Gene

SUZ12P1 (SUZ12 Polycomb Repressive Complex 2 Subunit Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUZ12P1 Gene

Genomics for SUZ12P1 Gene

Regulatory Elements for SUZ12P1 Gene

Enhancers for SUZ12P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F030727 1.1 Ensembl ENCODE 42.1 +19.4 19402 2.6 ELF3 TBP HDAC1 PKNOX1 ATF1 NFRKB ZNF121 SCRT2 CREM EGR2 SUZ12P1 ENSG00000266490 LOC105371722 CRLF3 LOC101927093 RAB11FIP4 ENSG00000263603 ENSG00000265443
GH17F030730 0.5 ENCODE 33.8 +22.2 22200 1.7 HDGF ATF1 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 GLIS2 ZNF143 SUZ12P1 LRRC37BP1 ENSG00000263603 ENSG00000280069
GH17F030818 0.2 ENCODE 33.8 +113.5 113484 8.4 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 ZNF207 SUZ12P1 ENSG00000265289 LOC101927093 ENSG00000214719 ENSG00000263567 TBC1D29 LRRC37BP1 CRLF3 ENSG00000276250
GH17F030812 0.2 ENCODE 33.8 +105.1 105114 4.7 PKNOX1 SIN3A FEZF1 ZBTB40 ZNF335 EGR2 SP3 ELF1 NR2F2 ZFP69B SUZ12P1 LOC101927093 CPD ENSG00000276250 CRLF3
GH17F030807 1.2 FANTOM5 ENCODE 33.7 +99.8 99801 5.1 HDGF CTCF HDAC1 TBP TFAP4 ATF1 USF1 ZNF133 SIN3A FEZF1 SUZ12P1 ATAD5 RPS17P3 CRLF3 LOC101927093 LRRC37BP1 ENSG00000276250
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SUZ12P1 on UCSC Golden Path with GeneCards custom track

Promoters for SUZ12P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001343905 201 3801 HDGF ATF1 PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF48 ZNF2 YY1

Genomic Location for SUZ12P1 Gene

Chromosome:
17
Start:
30,709,299 bp from pter
End:
30,790,908 bp from pter
Size:
81,610 bases
Orientation:
Plus strand

Genomic View for SUZ12P1 Gene

Genes around SUZ12P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SUZ12P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUZ12P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUZ12P1 Gene

Proteins for SUZ12P1 Gene

Post-translational modifications for SUZ12P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SUZ12P1 Gene

Domains & Families for SUZ12P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SUZ12P1 Gene

Function for SUZ12P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SUZ12P1 Gene

Localization for SUZ12P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SUZ12P1 Gene

Pathways & Interactions for SUZ12P1 Gene

SuperPathways for SUZ12P1 Gene

No Data Available

Interacting Proteins for SUZ12P1 Gene

Gene Ontology (GO) - Biological Process for SUZ12P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SUZ12P1 Gene

Transcripts for SUZ12P1 Gene

Unigene Clusters for SUZ12P1 Gene

Suppressor of zeste 12 homolog pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SUZ12P1 Gene

No ASD Table

Relevant External Links for SUZ12P1 Gene

GeneLoc Exon Structure for
SUZ12P1
ECgene alternative splicing isoforms for
SUZ12P1

Expression for SUZ12P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SUZ12P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SUZ12P1 Gene:

SUZ12P1

SOURCE GeneReport for Unigene cluster for SUZ12P1 Gene:

Hs.628886
genes like me logo Genes that share expression patterns with SUZ12P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SUZ12P1 Gene

Orthologs for SUZ12P1 Gene

Evolution for SUZ12P1 Gene

ENSEMBL:
Gene Tree for SUZ12P1 (if available)
TreeFam:
Gene Tree for SUZ12P1 (if available)

No data available for Orthologs for SUZ12P1 Gene

Paralogs for SUZ12P1 Gene

No data available for Paralogs for SUZ12P1 Gene

Variants for SUZ12P1 Gene

Sequence variations from dbSNP and Humsavar for SUZ12P1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10401039 -- 30,725,810(+) ccaga(G/T)accta intron-variant
rs10401049 -- 30,725,725(+) tcgag(A/G)ctgca intron-variant
rs1056647 -- 30,733,665(+) TCATC(C/G)ACTTA intron-variant
rs1056650 -- 30,733,806(+) AGATA(A/C)AACTT intron-variant
rs1056652 -- 30,733,869(+) AGATT(C/T)ATTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SUZ12P1 Gene

Variant ID Type Subtype PubMed ID
esv2673451 CNV deletion 23128226
esv2715813 CNV deletion 23290073
esv3640352 CNV loss 21293372
esv3640353 CNV loss 21293372
esv3640354 CNV loss 21293372
esv3640355 CNV loss 21293372
esv3892992 CNV loss 25118596
nsv1072728 CNV deletion 25765185
nsv1126454 CNV deletion 24896259
nsv457720 CNV loss 19166990
nsv827943 CNV gain 20364138
nsv833411 CNV loss 17160897
nsv962303 CNV duplication 23825009
nsv978406 CNV duplication 23825009

Relevant External Links for SUZ12P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SUZ12P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SUZ12P1 Gene

Disorders for SUZ12P1 Gene

Relevant External Links for SUZ12P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SUZ12P1

No disorders were found for SUZ12P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SUZ12P1 Gene

Publications for SUZ12P1 Gene

  1. Type 2 NF1 deletions are highly unusual by virtue of the absence of nonallelic homologous recombination hotspots and an apparent preference for female mitotic recombination. (PMID: 17999360) Steinmann K. … Kehrer-Sawatzki H. (Am. J. Hum. Genet. 2007) 2 3 64
  2. RNF135 mutations are not present in patients with Sotos syndrome-like features. (PMID: 19291764) Visser R. … Losekoot M. (Am. J. Med. Genet. A 2009) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for SUZ12P1 Gene

Sources for SUZ12P1 Gene

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