Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SUZ12P1 Gene

Aliases for SUZ12P1 Gene

  • SUZ12 Polycomb Repressive Complex 2 Subunit Pseudogene 1 2 3 5
  • Suppressor Of Zeste 12 Homolog Pseudogene 1 2 3
  • Suppressor Of Zeste 12 Homolog Pseudogene 2
  • SUZ12P 3

External Ids for SUZ12P1 Gene

Previous HGNC Symbols for SUZ12P1 Gene

  • SUZ12P

Previous GeneCards Identifiers for SUZ12P1 Gene

  • GC17P029059
  • GC17P029038
  • GC17P029040

Summaries for SUZ12P1 Gene

GeneCards Summary for SUZ12P1 Gene

SUZ12P1 (SUZ12 Polycomb Repressive Complex 2 Subunit Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUZ12P1 Gene

Genomics for SUZ12P1 Gene

Regulatory Elements for SUZ12P1 Gene

Enhancers for SUZ12P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G030706 1.3 ENCODE dbSUPER 44.2 -0.5 -508 5.0 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF207 KLF13 SUZ12P1 ATAD5 LRRC37BP1 ENSG00000266490 SMURF2P1 SH3GL1P2 TEFM LOC101927093 RN7SL316P
GH17G030727 1.2 Ensembl ENCODE 42.1 +19.5 19540 2.2 HDGF PKNOX1 ATF1 TCF12 SP5 YY2 JUNB TBX21 MBD2 SMARCA4 SUZ12P1 ENSG00000266490 LOC105371722 CRLF3 LOC101927093 RAB11FIP4 ENSG00000265443 ENSG00000263603
GH17G030697 1.5 Ensembl ENCODE dbSUPER 32.7 -11.2 -11205 1.4 ARID4B SIN3A GLI4 ZNF2 GTF3C2 ZNF121 ZNF143 FOS SP3 REST SUZ12P1 ENSG00000266490 SH3GL1P2 ATAD5 DPRXP4 RNF135 ENSG00000264456 TEFM LRRC37BP1 RN7SL316P
GH17G030806 1.4 FANTOM5 Ensembl ENCODE 33.7 +99.6 99620 5.4 HDAC1 HDGF TBP ATF1 ZNF133 SIN3A FEZF1 ZBTB40 TCF12 ZNF121 SUZ12P1 RPS17P3 ATAD5 CRLF3 LOC101927093 LRRC37BP1 ENSG00000276250
GH17G029743 1.5 Ensembl ENCODE dbSUPER 31.2 -964.5 -964468 1.8 FOXA2 SIN3A FEZF1 ZNF2 YY1 SLC30A9 ZNF302 ZNF548 ZNF662 ZNF579 LRRC37BP1 CORO6 SUZ12P1 NUFIP2 SH3GL1P2 ENSG00000264290 LOC101927018 PHF12 ANKRD13B ENSG00000265908
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SUZ12P1 on UCSC Golden Path with GeneCards custom track

Promoters for SUZ12P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000093025 1 2601 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 KLF13 SP3 REST

Genomic Location for SUZ12P1 Gene

Chromosome:
17
Start:
30,709,299 bp from pter
End:
30,790,908 bp from pter
Size:
81,610 bases
Orientation:
Plus strand

Genomic View for SUZ12P1 Gene

Genes around SUZ12P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SUZ12P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUZ12P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUZ12P1 Gene

Proteins for SUZ12P1 Gene

Post-translational modifications for SUZ12P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SUZ12P1 Gene

Domains & Families for SUZ12P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SUZ12P1 Gene

Function for SUZ12P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SUZ12P1 Gene

Localization for SUZ12P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SUZ12P1 Gene

Pathways & Interactions for SUZ12P1 Gene

SuperPathways for SUZ12P1 Gene

No Data Available

Interacting Proteins for SUZ12P1 Gene

Gene Ontology (GO) - Biological Process for SUZ12P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SUZ12P1 Gene

Drugs & Compounds for SUZ12P1 Gene

No Compound Related Data Available

Transcripts for SUZ12P1 Gene

mRNA/cDNA for SUZ12P1 Gene

(3) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SUZ12P1 Gene

Suppressor of zeste 12 homolog pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SUZ12P1 Gene

No ASD Table

Relevant External Links for SUZ12P1 Gene

GeneLoc Exon Structure for
SUZ12P1
ECgene alternative splicing isoforms for
SUZ12P1

Expression for SUZ12P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SUZ12P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SUZ12P1 Gene:

SUZ12P1

SOURCE GeneReport for Unigene cluster for SUZ12P1 Gene:

Hs.628886
genes like me logo Genes that share expression patterns with SUZ12P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SUZ12P1 Gene

Orthologs for SUZ12P1 Gene

Evolution for SUZ12P1 Gene

ENSEMBL:
Gene Tree for SUZ12P1 (if available)
TreeFam:
Gene Tree for SUZ12P1 (if available)

No data available for Orthologs for SUZ12P1 Gene

Paralogs for SUZ12P1 Gene

No data available for Paralogs for SUZ12P1 Gene

Variants for SUZ12P1 Gene

Sequence variations from dbSNP and Humsavar for SUZ12P1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000000348 -- 30,791,795(+) ACAAG(C/T)GTGAG intron-variant, nc-transcript-variant
rs1000009683 -- 30,733,620(+) ACTAA(C/T)AGGTC intron-variant
rs1000084336 -- 30,739,550(+) TTTTT(G/T)TATTT intron-variant
rs1000097059 -- 30,768,912(+) CAAAA(C/T)CTGGA intron-variant, nc-transcript-variant
rs1000155272 -- 30,757,933(+) TTGTA(-/T)TTTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SUZ12P1 Gene

Variant ID Type Subtype PubMed ID
esv2673451 CNV deletion 23128226
esv2715813 CNV deletion 23290073
esv3640352 CNV loss 21293372
esv3640353 CNV loss 21293372
esv3640354 CNV loss 21293372
esv3640355 CNV loss 21293372
esv3892992 CNV loss 25118596
nsv1072728 CNV deletion 25765185
nsv1126454 CNV deletion 24896259
nsv457720 CNV loss 19166990
nsv827943 CNV gain 20364138
nsv833411 CNV loss 17160897
nsv962303 CNV duplication 23825009
nsv978406 CNV duplication 23825009

Relevant External Links for SUZ12P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SUZ12P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SUZ12P1 Gene

Disorders for SUZ12P1 Gene

Relevant External Links for SUZ12P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SUZ12P1

No disorders were found for SUZ12P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SUZ12P1 Gene

Publications for SUZ12P1 Gene

  1. Type 2 NF1 deletions are highly unusual by virtue of the absence of nonallelic homologous recombination hotspots and an apparent preference for female mitotic recombination. (PMID: 17999360) Steinmann K. … Kehrer-Sawatzki H. (Am. J. Hum. Genet. 2007) 2 3 64
  2. RNF135 mutations are not present in patients with Sotos syndrome-like features. (PMID: 19291764) Visser R. … Losekoot M. (Am. J. Med. Genet. A 2009) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for SUZ12P1 Gene

Sources for SUZ12P1 Gene

Content
Loading form....