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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

SUSD3 Gene

protein-coding GIFtS: 41
GCID: GC09P095820

sushi domain containing 3

Search for SUSD3
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Sushi Domain Containing 3¹ ²
MGC26847¹
Sushi Domain-Containing Protein 3²

External Ids:	HGNC: 28391¹	Entrez Gene: 203328²	Ensembl: ENSG00000157303⁷	UniProtKB: Q96L08³

Export aliases for SUSD3 gene to outside databases

Previous GC identifers: GC09P091162 GC09P092900 GC09P094860 GC09P065497

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000009.11 NC_018920.1 NT_008470.19

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the SUSD3 gene promoter:
STAT1 Pax-5 STAT4 STAT1beta STAT5A STAT1alpha HNF-1A HNF-1 STAT2 STAT3
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: SUSD3 promoter sequence

Search SABiosciences Chromatin IP Primers for SUSD3

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SUSD3

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q22.31 Ensembl cytogenetic band: 9q22.31 HGNC cytogenetic band: 9q22.32

SUSD3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SUSD3 gene location

GeneLoc information about chromosome 9 GeneLoc Exon Structure

GeneLoc location for GC09P095820: view genomic region (about GC identifiers)

Start:	95,820,989 bp from pter	End:	95,847,420 bp from pter
Size:	26,432 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: SUSD3_HUMAN, Q96L08 (See protein sequence)

Recommended Name: Sushi domain-containing protein 3

Size: 255 amino acids; 27119 Da

Subcellular location: Membrane; Single-pass membrane protein (Potential)

Secondary accessions: Q49AA6 Q6UXV7

Alternative splicing: 3 isoforms: Q96L08-1 Q96L08-2 Q96L08-3 (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for SUSD3: NX_Q96L08

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q96L08

SUSD3 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_659443.1

ENSEMBL proteins:

ENSP00000364621 ENSP00000364618

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	Uscn Proteins for SUSD3

Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0016021	integral to membrane	IEA	--

SUSD3 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

SUSD3 for domains About GeneDecksing

1 InterPro domain/family:

IPR000436 Sushi_SCR_CCP

Graphical View of Domain Structure for InterPro Entry Q96L08

ProtoNet protein and cluster: Q96L08

1 Blocks protein family: IPB000436 Sushi domain/SCR domain/CCP module

UniProtKB/Swiss-Prot: SUSD3_HUMAN, Q96L08

Similarity: Contains 1 Sushi (CCP/SCR) domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for SUSD3

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

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Search CenterWatch for drugs/clinical trials and news about SUSD3

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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About This Section

REFSEQ mRNAs for SUSD3 gene:

NM_145006.2

Unigene Cluster for SUSD3:

Sushi domain containing 3

Hs.88417 [show with all ESTs]

Unigene Representative Sequence: AK128289

4 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000375472(uc004atb.3 uc004atc.3) ENST00000465709 ENST00000471462

ENST00000375469

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Additional cDNA sequence:

AK128289.1 AK128453.1 AL137623.1 AY358190.1 BC014601.2 BC041834.1

10 DOTS entries:

DT.456084 DT.101959046 DT.101981230 DT.100674322 DT.75101910 DT.92048102 DT.121162377 DT.121162385

DT.97772950 DT.430383

24/92 AceView cDNA sequences (see all 92):

AI972041 BI910862 BC041834 AA404586 BM458621 AI684361 AK128453 AA916701

AI801840 AA714720 AI760200 AY358190 AA383827 AA490088 CD366701 AW027022

BE857970 AI373233 AI802088 BM542973 AI439182 AA453656 AI654407 AI452970

GeneLoc Exon Structure

5 Alternative Splicing Database (ASD) splice patterns (SP) for SUSD3 About this scheme

ExUns:	1a	·	1b	·	1c	^	2a	·	2b	^	3	^	4	^	5a	·	5b	^	6	^	7a	·	7b
SP1:							-				-				-
SP2:							-		-		-				-
SP3:							-		-		-				-				-
SP4:
SP5:

ECgene alternative splicing isoforms for SUSD3

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

SUSD3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CGCCCAGCTC

About this image

SUSD3 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

5 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Kidney

Proximal Tubule Cells

Kidney

Kidney

Kidney

Kidney

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

Definitive endoderm-like cells (A scalable, suspensi...)

See SUSD3 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SUSD3

SOURCE GeneReport for Unigene cluster: Hs.88417

SABiosciences Custom PCR Arrays for SUSD3

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for SUSD3 gene from 4/9 species (see all 9) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Susd3^{1 , 5}	sushi domain containing 3^{1, 5}	76.21(n)¹ 70.16(a)¹		13 (25.16 cM)⁵ 66329¹ NM_025491.3¹ NP_079767.2¹ 49230690⁵
chicken (Gallus gallus)	Aves	SUSD3¹	sushi domain containing 3	59.57(n) 50(a)		415988 XM_414330.3 XP_414330.1
lizard (Anolis carolinensis)	Reptilia	SUSD3⁶	--	59(a)	1 ↔ 1	GL343225.1(1963286-1969720)
zebrafish (Danio rerio)	Actinopterygii	CABZ01066578.1⁶	--	26(a)	1 ↔ 1	25(1476126-1483765)

ENSEMBL Gene Tree for SUSD3 (if available)
TreeFam Gene Tree for SUSD3 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 9 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs140123000^1,2		--	95819004(+)	`CTGGTC/TGCAAA`	1	--	us2k¹		0	--	--	--	--
rs191977789^1,2		--	95819078(+)	`CTGAGC/TCTGGC`	1	--	us2k¹		0	--	--	--	--
rs113962723^1,2	C,	--	95819081(+)	`AGCCTG/AGCCGG`	1	--	us2k¹		2		NA	122
rs116154970^1,2		--	95819289(+)	`TGGAGT/GTTTTG`	1	--	us2k¹		1		WA	118
rs143932504^1,2		--	95819339(+)	`CTGGCC/TTCCTG`	1	--	us2k¹		0	--	--	--	--
rs146869756^1,2		--	95819471(+)	`CCTGGA/GTCACA`	1	--	us2k¹		0	--	--	--	--
rs185160243^1,2		--	95819513(+)	`GGTGTC/TTTCCA`	1	--	us2k¹		0	--	--	--	--
rs140528494^1,2		--	95819655(+)	`GGCCTG/TAGAGG`	1	--	us2k¹		0	--	--	--	--
rs150392262^1,2		--	95819808(+)	`CGTGTC/GTGACC`	1	--	us2k¹		0	--	--	--	--
rs77878867^1,2	C,F,	--	95819814(+)	`TGACCC/TACAAG`	1	--	us2k¹		1		WA	118

HapMap Linkage Disequilibrium report for SUSD3 (95820989 - 95847420 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for SUSD3
1 CNV: 7754

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for SUSD3 gene integrated from 9 sources:
(articles sorted by number of sources associating them with SUSD3)

Utopia: connect your pdf to the dynamic
world of online information

The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)^{1, 2, 3} Clark H.F.... Gray A.M. (2003)
DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)^{1, 2} Humphray S.J.... Dunham I. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)¹ OlA!h J....OvA!di J. (2011)
The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974)² Sjoeblom T.... Velculescu V.E. (2006)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 203328	HGNC: 28391	AceView: SUSD3	Ensembl:ENSG00000157303	euGenes: HUgn203328
ECgene: SUSD3	H-InvDB: SUSD3

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for SUSD3	Pharmacogenomics, SNPs, Pathways

Intellectual Property for SUSD3 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for SUSD3 gene:
Search GeneIP for patents involving SUSD3

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
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About This Section


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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SUSD3

GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes SUSD3 gene at Home site.

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SUSD3 Gene

sushi domain containing 3

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SUSD3 Gene

sushi domain containing 3

Aliasesfor SUSD3 gene

Summariesfor SUSD3 gene

Genomic Viewsfor SUSD3 gene

Proteinsfor SUSD3 gene

Protein Domains /Familiesfor SUSD3 gene

Functionfor SUSD3 gene

Pathways & Interactionsfor SUSD3 gene

Drugs & Compoundsfor SUSD3 gene

Transcriptsfor SUSD3 gene

Expression for SUSD3 gene

Orthologsfor SUSD3 gene

Paralogsfor SUSD3 gene

Genomic Variantsfor SUSD3 gene

Disorders / Diseasesfor SUSD3 gene

Publicationsfor SUSD3 gene

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Genome Databases showing SUSD3 gene

Other Databases showing SUSD3 gene

Specialized Databases showing SUSD3 gene

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for SUSD3 gene

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for SUSD3 gene

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for SUSD3 gene

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for SUSD3 gene

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for SUSD3 gene

Function
for SUSD3 gene

Pathways & Interactions
for SUSD3 gene

Drugs & Compounds
for SUSD3 gene

Transcripts
for SUSD3 gene

Expression
for SUSD3 gene

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for SUSD3 gene

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for SUSD3 gene

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for SUSD3 gene

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for SUSD3 gene

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for SUSD3 gene

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for SUSD3 gene

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for SUSD3 gene