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Aliases for SUSD3 Gene

Aliases for SUSD3 Gene

  • Sushi Domain Containing 3 2 3

External Ids for SUSD3 Gene

Previous GeneCards Identifiers for SUSD3 Gene

  • GC09P091162
  • GC09P092900
  • GC09P094860
  • GC09P095820
  • GC09P065497

Summaries for SUSD3 Gene

GeneCards Summary for SUSD3 Gene

SUSD3 (Sushi Domain Containing 3) is a Protein Coding gene.

UniProtKB/Swiss-Prot for SUSD3 Gene

  • May play a role in breast tumorigenesis by promoting estrogen-dependent cell proliferation, cell-cell interactions and migration.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUSD3 Gene

Genomics for SUSD3 Gene

Regulatory Elements for SUSD3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SUSD3 Gene

Chromosome:
9
Start:
93,058,688 bp from pter
End:
93,085,138 bp from pter
Size:
26,451 bases
Orientation:
Plus strand

Genomic View for SUSD3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SUSD3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUSD3 Gene

Proteins for SUSD3 Gene

  • Protein details for SUSD3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96L08-SUSD3_HUMAN
    Recommended name:
    Sushi domain-containing protein 3
    Protein Accession:
    Q96L08
    Secondary Accessions:
    • Q49AA6
    • Q6UXV7

    Protein attributes for SUSD3 Gene

    Size:
    255 amino acids
    Molecular mass:
    27119 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SUSD3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SUSD3 Gene

Proteomics data for SUSD3 Gene at MOPED

Post-translational modifications for SUSD3 Gene

  • Glycosylation at Asn 27
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for SUSD3 Gene

Domains & Families for SUSD3 Gene

Gene Families for SUSD3 Gene

Protein Domains for SUSD3 Gene

Suggested Antigen Peptide Sequences for SUSD3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96L08

UniProtKB/Swiss-Prot:

SUSD3_HUMAN :
  • Contains 1 Sushi (CCP/SCR) domain.
Domain:
  • Contains 1 Sushi (CCP/SCR) domain.
genes like me logo Genes that share domains with SUSD3: view

Function for SUSD3 Gene

Molecular function for SUSD3 Gene

UniProtKB/Swiss-Prot Function:
May play a role in breast tumorigenesis by promoting estrogen-dependent cell proliferation, cell-cell interactions and migration.
UniProtKB/Swiss-Prot Induction:
Up-regulated upon treatment with estradiol in MCF7 cells.

Phenotypes for SUSD3 Gene

GenomeRNAi human phenotypes for SUSD3:
genes like me logo Genes that share phenotypes with SUSD3: view

Animal Model Products

miRNA for SUSD3 Gene

miRTarBase miRNAs that target SUSD3

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SUSD3

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for SUSD3 Gene

Localization for SUSD3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SUSD3 Gene

Cell membrane; Single-pass membrane protein. Note=Prominently localized to cell-cell borders. {ECO:0000269 PubMed:24413080}.

Gene Ontology (GO) - Cellular Components for SUSD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IDA 24413080
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SUSD3: view

No data available for Subcellular locations from COMPARTMENTS for SUSD3 Gene

Pathways & Interactions for SUSD3 Gene

SuperPathways for SUSD3 Gene

No Data Available

Interacting Proteins for SUSD3 Gene

Gene Ontology (GO) - Biological Process for SUSD3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SUSD3 Gene

Drugs & Compounds for SUSD3 Gene

No Compound Related Data Available

Transcripts for SUSD3 Gene

Unigene Clusters for SUSD3 Gene

Sushi domain containing 3:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SUSD3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SUSD3 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b
SP1: - - -
SP2: - - - -
SP3: - - - - -
SP4:
SP5:

Relevant External Links for SUSD3 Gene

GeneLoc Exon Structure for
SUSD3
ECgene alternative splicing isoforms for
SUSD3

Expression for SUSD3 Gene

mRNA expression in normal human tissues for SUSD3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SUSD3 Gene

This gene is overexpressed in Testis (x8.4) and Whole Blood (x5.3).

Protein differential expression in normal tissues from HIPED for SUSD3 Gene

This gene is overexpressed in Adipocyte (56.5) and CD8 Tcells (9.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SUSD3 Gene



SOURCE GeneReport for Unigene cluster for SUSD3 Gene Hs.88417

mRNA Expression by UniProt/SwissProt for SUSD3 Gene

Q96L08-SUSD3_HUMAN
Tissue specificity: Highly expressed in estrogen receptor-positive breast tumors.
genes like me logo Genes that share expression patterns with SUSD3: view

Protein tissue co-expression partners for SUSD3 Gene

Primer Products

In Situ Assay Products

Orthologs for SUSD3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SUSD3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SUSD3 35
  • 76.55 (n)
  • 67.8 (a)
SUSD3 36
  • 65 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Susd3 35
  • 75.4 (n)
  • 69.76 (a)
Susd3 16
Susd3 36
  • 64 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SUSD3 35
  • 99.08 (n)
  • 99.21 (a)
SUSD3 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Susd3 35
  • 77.15 (n)
  • 70.56 (a)
dog
(Canis familiaris)
Mammalia SUSD3 36
  • 56 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 39 (a)
OneToMany
-- 36
  • 55 (a)
OneToMany
-- 36
  • 15 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SUSD3 36
  • 47 (a)
OneToOne
chicken
(Gallus gallus)
Aves SUSD3 36
  • 39 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SUSD3 36
  • 37 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SUSD3 36
  • 27 (a)
OneToOne
Species with no ortholog for SUSD3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SUSD3 Gene

ENSEMBL:
Gene Tree for SUSD3 (if available)
TreeFam:
Gene Tree for SUSD3 (if available)

Paralogs for SUSD3 Gene

No data available for Paralogs for SUSD3 Gene

Variants for SUSD3 Gene

Sequence variations from dbSNP and Humsavar for SUSD3 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1131768 -- 93,075,788(+) GGCAC(A/C/G)TGCGC synonymous-codon, reference, intron-variant, utr-variant-5-prime
rs1131773 - 93,077,974(+) AGAGC(A/G)AGCGG reference, missense
rs1134127 -- 93,075,611(-) AGACC(A/G/T)GGGGA intron-variant
rs3209653 -- 93,085,134(+) CTACA(A/G)AAAAA utr-variant-3-prime
rs4077176 -- 93,064,914(+) TGCCT(C/T)GAGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SUSD3 Gene

Variant ID Type Subtype PubMed ID
nsv526296 CNV Loss 19592680
nsv893575 CNV Loss 21882294
nsv893576 CNV Gain 21882294
dgv8260n71 CNV Loss 21882294
esv2659260 CNV Deletion 23128226
esv32996 CNV Gain 17666407
esv2738780 CNV Deletion 23290073

Variation tolerance for SUSD3 Gene

Residual Variation Intolerance Score: 90.85% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.86; 79.38% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SUSD3 Gene

HapMap Linkage Disequilibrium report
SUSD3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SUSD3 Gene

Disorders for SUSD3 Gene

Relevant External Links for SUSD3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SUSD3
genes like me logo Genes that share disorders with SUSD3: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SUSD3 Gene

Publications for SUSD3 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 2 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  3. Estrogen-dependent sushi domain containing 3 regulates cytoskeleton organization and migration in breast cancer cells. (PMID: 24413080) Moy I. … Bulun S.E. (Oncogene 2014) 67
  4. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 67
  5. The consensus coding sequences of human breast and colorectal cancers. (PMID: 16959974) Sjoeblom T. … Velculescu V.E. (Science 2006) 67

Products for SUSD3 Gene

Sources for SUSD3 Gene

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