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Aliases for SUSD2 Gene

Aliases for SUSD2 Gene

  • Sushi Domain Containing 2 2 3 5
  • Sushi Domain (SCR Repeat) Containing 3
  • Sushi Domain-Containing Protein 2 3
  • Testicular Tissue Protein Li 190 3
  • BK65A6.2 3

External Ids for SUSD2 Gene

Previous GeneCards Identifiers for SUSD2 Gene

  • GC22P022902
  • GC22P022903
  • GC22P022904
  • GC22P022907
  • GC22P024577
  • GC22P007526

Summaries for SUSD2 Gene

GeneCards Summary for SUSD2 Gene

SUSD2 (Sushi Domain Containing 2) is a Protein Coding gene. GO annotations related to this gene include scavenger receptor activity and polysaccharide binding. An important paralog of this gene is MUC4.

UniProtKB/Swiss-Prot for SUSD2 Gene

  • May be a cytokine receptor for C10ORF99. May be a tumor suppressor; together with C10ORF99 has a growth inhibitory effect on colon cancer cells which includes G1 cell cycle arrest (PubMed:25351403). May play a role in breast tumorigenesis (PubMed:23131994).

Additional gene information for SUSD2 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUSD2 Gene

Genomics for SUSD2 Gene

Regulatory Elements for SUSD2 Gene

Enhancers for SUSD2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H024200 1.8 FANTOM5 Ensembl ENCODE dbSUPER 33 +24.1 24107 10.7 FOXA2 YY1 TCF12 GTF3C2 FOS REST PPARG ZNF592 KAT8 SREBF1 SUSD2 MIF-AS1 CABIN1 GGTLC4P POM121L9P BCRP1 RPS10P29 SPECC1L SNRPD3 ENSG00000232545
GH22H024143 1.4 Ensembl ENCODE dbSUPER 34.6 -34.8 -34783 6.1 ELF3 MLX ARID4B ZNF76 THRB RARA SCRT2 RCOR1 EGR2 THAP11 SUSD2 CABIN1 MMP11 DDT ENSG00000232545
GH22H024151 1.5 Ensembl ENCODE dbSUPER 31.2 -25.4 -25407 8 HDGF FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 GLIS2 ZNF143 ATF7 SUSD2 CABIN1 MMP11 SMARCB1 SPECC1L ENSG00000232545
GH22H024195 1.7 FANTOM5 Ensembl ENCODE dbSUPER 19.9 +15.9 15916 3.6 SOX13 FOXA2 SAP130 CEBPG RARA ZNF121 CTBP1 GATA3 STAT2 RCOR1 SUSD2 GGT1 DDTL GGT5
GH22H024180 1.2 Ensembl ENCODE dbSUPER 25.3 -0.1 -128 1.7 SOX13 KLF1 SAP130 KLF17 DMAP1 ZIC2 TEAD3 POLR2A SCRT2 PRDM10 SUSD2 ENSG00000232545
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SUSD2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SUSD2 Gene

Genomic Locations for SUSD2 Gene
chr22:24,181,259-24,189,110
(GRCh38/hg38)
Size:
7,852 bases
Orientation:
Plus strand
chr22:24,577,227-24,585,078
(GRCh37/hg19)

Genomic View for SUSD2 Gene

Genes around SUSD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SUSD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUSD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUSD2 Gene

Proteins for SUSD2 Gene

  • Protein details for SUSD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UGT4-SUSD2_HUMAN
    Recommended name:
    Sushi domain-containing protein 2
    Protein Accession:
    Q9UGT4
    Secondary Accessions:
    • Q9H5Y6

    Protein attributes for SUSD2 Gene

    Size:
    822 amino acids
    Molecular mass:
    90208 Da
    Quaternary structure:
    • Interacts with LGALS1; leads to an increased amount of LGALS1 on the cell surface (PubMed:23131994). Interacts with C10ORF99; the interaction is direct (PubMed:25351403).
    SequenceCaution:
    • Sequence=BAB15481.1; Type=Frameshift; Positions=165; Evidence={ECO:0000305};

neXtProt entry for SUSD2 Gene

Post-translational modifications for SUSD2 Gene

  • Glycosylation at Asn162, Asn177, posLast=494494, and posLast=522522
  • Modification sites at PhosphoSitePlus

Other Protein References for SUSD2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SUSD2 Gene

Domains & Families for SUSD2 Gene

Gene Families for SUSD2 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted membrane proteins

Suggested Antigen Peptide Sequences for SUSD2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SUSD2: view

No data available for UniProtKB/Swiss-Prot for SUSD2 Gene

Function for SUSD2 Gene

Molecular function for SUSD2 Gene

UniProtKB/Swiss-Prot Function:
May be a cytokine receptor for C10ORF99. May be a tumor suppressor; together with C10ORF99 has a growth inhibitory effect on colon cancer cells which includes G1 cell cycle arrest (PubMed:25351403). May play a role in breast tumorigenesis (PubMed:23131994).

Phenotypes From GWAS Catalog for SUSD2 Gene

Gene Ontology (GO) - Molecular Function for SUSD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005044 scavenger receptor activity IEA --
GO:0005515 protein binding IPI 23131994
GO:0030247 polysaccharide binding IEA --
genes like me logo Genes that share ontologies with SUSD2: view
genes like me logo Genes that share phenotypes with SUSD2: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SUSD2 Gene

Localization for SUSD2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SUSD2 Gene

Cell membrane; Single-pass type I membrane protein. Note=SUSD2 and LGALS1 co-localized in very specific, punctate regions along the cell membrane of breast cancer cells. {ECO:0000269 PubMed:23131994}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SUSD2 gene
Compartment Confidence
plasma membrane 5
extracellular 5
peroxisome 1
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Plasma membrane (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SUSD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA,IDA 23131994
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with SUSD2: view

Pathways & Interactions for SUSD2 Gene

SuperPathways for SUSD2 Gene

No Data Available

Interacting Proteins for SUSD2 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000351075%0d%0a9606.ENSP00000265643%0d%0a9606.ENSP00000215909%0d%0a
Selected Interacting proteins: Q9UGT4-SUSD2_HUMAN ENSP00000351075 for SUSD2 Gene via IID STRING

Gene Ontology (GO) - Biological Process for SUSD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006898 receptor-mediated endocytosis IEA --
GO:0006955 immune response IEA --
GO:0051782 negative regulation of cell division IDA 25351403
GO:1902807 negative regulation of cell cycle G1/S phase transition IDA 25351403
genes like me logo Genes that share ontologies with SUSD2: view

No data available for Pathways by source and SIGNOR curated interactions for SUSD2 Gene

Drugs & Compounds for SUSD2 Gene

No Compound Related Data Available

Transcripts for SUSD2 Gene

mRNA/cDNA for SUSD2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(99) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SUSD2 Gene

Sushi domain containing 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SUSD2 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14a · 14b ^ 15a · 15b
SP1: -
SP2:
SP3:

Relevant External Links for SUSD2 Gene

GeneLoc Exon Structure for
SUSD2
ECgene alternative splicing isoforms for
SUSD2

Expression for SUSD2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SUSD2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SUSD2 Gene

This gene is overexpressed in Lung (x7.1), Artery - Tibial (x5.6), and Artery - Coronary (x5.5).

Protein differential expression in normal tissues from HIPED for SUSD2 Gene

This gene is overexpressed in Lung (10.2), Pancreas (9.3), Urine (8.7), Spinal cord (8.2), and Seminal vesicle (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SUSD2 Gene



Protein tissue co-expression partners for SUSD2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SUSD2 Gene:

SUSD2

SOURCE GeneReport for Unigene cluster for SUSD2 Gene:

Hs.131819

mRNA Expression by UniProt/SwissProt for SUSD2 Gene:

Q9UGT4-SUSD2_HUMAN
Tissue specificity: Highly expressed in breast cancer, but shows a restricted expression pattern in normal tissues such as adipose, adrenal gland, kidney, lung, mammary gland, placenta, thyroid, trachea, and uterus (PubMed:23131994). Also expressed in colon; down-regulated in colon cancer tissues (PubMed:25351403).

Evidence on tissue expression from TISSUES for SUSD2 Gene

  • Intestine(4.2)
  • Bone marrow(4.1)
  • Liver(4.1)
  • Nervous system(2.9)
  • Lung(2.4)
  • Kidney(2)
genes like me logo Genes that share expression patterns with SUSD2: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for SUSD2 Gene

Orthologs for SUSD2 Gene

This gene was present in the common ancestor of animals.

Orthologs for SUSD2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SUSD2 33 34
  • 98.82 (n)
dog
(Canis familiaris)
Mammalia SUSD2 33 34
  • 82.07 (n)
cow
(Bos Taurus)
Mammalia SUSD2 33 34
  • 81.97 (n)
mouse
(Mus musculus)
Mammalia Susd2 33 16 34
  • 77.42 (n)
rat
(Rattus norvegicus)
Mammalia Susd2 33
  • 76.82 (n)
oppossum
(Monodelphis domestica)
Mammalia SUSD2 34
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SUSD2 34
  • 60 (a)
OneToOne
chicken
(Gallus gallus)
Aves SUSD2 33 34
  • 59.67 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC793335 33
  • 55.99 (n)
SUSD2 34
  • 52 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000550 33
  • 48.14 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG31004 33 34
  • 46.51 (n)
worm
(Caenorhabditis elegans)
Secernentea CELE_K03H1.5 33
  • 41.15 (n)
K03H1.5 34
  • 13 (a)
ManyToMany
R09E10.5 34
  • 11 (a)
ManyToMany
F54D1.6 34
  • 10 (a)
ManyToMany
Species where no ortholog for SUSD2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for SUSD2 Gene

ENSEMBL:
Gene Tree for SUSD2 (if available)
TreeFam:
Gene Tree for SUSD2 (if available)

Paralogs for SUSD2 Gene

Paralogs for SUSD2 Gene

Pseudogenes.org Pseudogenes for SUSD2 Gene

genes like me logo Genes that share paralogs with SUSD2: view

Variants for SUSD2 Gene

Sequence variations from dbSNP and Humsavar for SUSD2 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000280624 -- 24,179,602(+) TCCAG(G/T)ATGGA upstream-variant-2KB
rs1000289225 -- 24,188,243(+) GGTGC(C/T)GTTGG reference, missense
rs1001097649 -- 24,182,783(+) CCTGC(A/G)GGGCT intron-variant
rs1001158049 -- 24,182,550(+) CTACC(A/C)GGCCT intron-variant
rs1002216923 -- 24,187,186(+) ATGCA(A/T)CCCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SUSD2 Gene

Variant ID Type Subtype PubMed ID
nsv9881 CNV loss 18304495
nsv953058 CNV deletion 24416366
nsv834158 CNV gain 17160897
nsv834157 CNV gain 17160897
nsv7350 OTHER inversion 18451855
nsv528842 CNV loss 19592680
nsv526567 CNV gain 19592680
nsv508730 CNV insertion 20534489
nsv483072 CNV loss 15286789
nsv1110863 OTHER inversion 24896259
nsv1055830 CNV gain 25217958
esv3893463 CNV gain 25118596
esv3575443 CNV gain 25503493
esv2724041 CNV deletion 23290073
esv21680 CNV loss 19812545
dgv8039n54 CNV gain 21841781
dgv4528n100 CNV gain 25217958

Variation tolerance for SUSD2 Gene

Residual Variation Intolerance Score: 87.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.98; 79.97% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SUSD2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SUSD2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SUSD2 Gene

Disorders for SUSD2 Gene

Relevant External Links for SUSD2

Human Genome Epidemiology (HuGE) Navigator
SUSD2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SUSD2

No disorders were found for SUSD2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SUSD2 Gene

Publications for SUSD2 Gene

  1. CSBF/C10orf99, a novel potential cytokine, inhibits colon cancer cell growth through inducing G1 arrest. (PMID: 25351403) Pan W … Han W (Scientific reports 2014) 3 4 60
  2. Multiple functions of sushi domain containing 2 (SUSD2) in breast tumorigenesis. (PMID: 23131994) Watson AP … Egland KA (Molecular cancer research : MCR 2013) 3 4 60
  3. Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PMID: 16335952) Liu T … Smith RD (Journal of proteome research 2005) 3 4 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60

Products for SUSD2 Gene

Sources for SUSD2 Gene

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