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Aliases for SURF6 Gene

Aliases for SURF6 Gene

  • Surfeit 6 2 3 5
  • Surfeit Locus Protein 6 2 3
  • SURF-6 4
  • RRP14 3

External Ids for SURF6 Gene

Previous GeneCards Identifiers for SURF6 Gene

  • GC09M127287
  • GC09M127754
  • GC09M129551
  • GC09M131473
  • GC09M133227
  • GC09M135187
  • GC09M136197
  • GC09M105697

Summaries for SURF6 Gene

Entrez Gene Summary for SURF6 Gene

  • This gene encodes a conserved protein that is localized to the nucleolus. The encoded protein may function as a nucleolar-matrix protein with nucleic acid-binding properties. There is a pseudogene for this gene on chromosome Y. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

GeneCards Summary for SURF6 Gene

SURF6 (Surfeit 6) is a Protein Coding gene. GO annotations related to this gene include poly(A) RNA binding and RNA binding.

UniProtKB/Swiss-Prot for SURF6 Gene

  • Binds to both DNA and RNA in vitro, with a stronger binding capacity for RNA. May represent a nucleolar constitutive protein involved in ribosomal biosynthesis or assembly (By similarity).

Gene Wiki entry for SURF6 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SURF6 Gene

Genomics for SURF6 Gene

Regulatory Elements for SURF6 Gene

Enhancers for SURF6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G133367 1.5 Ensembl ENCODE dbSUPER 44.9 -34.0 -33977 6.0 YY1 TCF12 ZNF121 ZNF766 GATA2 REST ZNF488 MBD2 SMARCA4 GLIS1 SURF6 SURF1 ADAMTS13 MED22 RPL7A SNORD24 SNORD36B ENSG00000201451 ENSG00000230064 GBGT1
GH09G133713 1.9 FANTOM5 Ensembl ENCODE dbSUPER 27.6 -378.7 -378650 3.5 HDGF FOXA2 PKNOX1 ARNT MLX ZFP64 ARID4B DMAP1 YBX1 ZNF2 SURF6 TSC1 SARDH DBH-AS1 ENSG00000273249 COL5A1-AS1 GC09P133683
GH09G133333 1.2 ENCODE 40.1 +1.1 1115 4.2 MLX CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SURF6 SURF1 WDR5 GTF3C4 LOC100130548 REXO4 RXRA TTF1 ADAMTS13 RPL7A
GH09G133373 1.3 ENCODE dbSUPER 34.1 -39.0 -39029 3.0 CREB3L1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF143 ZNF207 FOS KLF13 SURF6 SURF1 ADAMTS13 STKLD1 PIR60170
GH09G133416 1.5 FANTOM5 ENCODE 26.5 -81.6 -81580 3.5 CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 SURF1 SURF6 LINC00094 ADAMTS13 CACFD1 SURF2 MED22 RPL7A SNORD24 SNORD36A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SURF6 on UCSC Golden Path with GeneCards custom track

Promoters for SURF6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000242569 498 1401 MLX CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC

Genomic Location for SURF6 Gene

Chromosome:
9
Start:
133,328,774 bp from pter
End:
133,336,398 bp from pter
Size:
7,625 bases
Orientation:
Minus strand

Genomic View for SURF6 Gene

Genes around SURF6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SURF6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SURF6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SURF6 Gene

Proteins for SURF6 Gene

  • Protein details for SURF6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75683-SURF6_HUMAN
    Recommended name:
    Surfeit locus protein 6
    Protein Accession:
    O75683
    Secondary Accessions:
    • Q5T8U1
    • Q9BRK9
    • Q9BTZ5
    • Q9UK24

    Protein attributes for SURF6 Gene

    Size:
    361 amino acids
    Molecular mass:
    41450 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SURF6 Gene

Post-translational modifications for SURF6 Gene

  • Ubiquitination at Lys7
  • Modification sites at PhosphoSitePlus

Other Protein References for SURF6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SURF6 Gene

Domains & Families for SURF6 Gene

Protein Domains for SURF6 Gene

Suggested Antigen Peptide Sequences for SURF6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O75683

UniProtKB/Swiss-Prot:

SURF6_HUMAN :
  • Belongs to the SURF6 family.
Family:
  • Belongs to the SURF6 family.
genes like me logo Genes that share domains with SURF6: view

No data available for Gene Families for SURF6 Gene

Function for SURF6 Gene

Molecular function for SURF6 Gene

GENATLAS Biochemistry:
surfeit 6 protein (see SURF@),located in nucleolus,ubiquitously expressed
UniProtKB/Swiss-Prot Function:
Binds to both DNA and RNA in vitro, with a stronger binding capacity for RNA. May represent a nucleolar constitutive protein involved in ribosomal biosynthesis or assembly (By similarity).

Gene Ontology (GO) - Molecular Function for SURF6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IBA,ISS --
GO:0003723 RNA binding ISS,TAS --
GO:0005515 protein binding IPI 22113938
genes like me logo Genes that share ontologies with SURF6: view

Phenotypes for SURF6 Gene

GenomeRNAi human phenotypes for SURF6:
genes like me logo Genes that share phenotypes with SURF6: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SURF6 Gene

Localization for SURF6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SURF6 Gene

Nucleus, nucleoplasm. Nucleus, nucleolus. Note=Granular component of the nucleolus. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SURF6 gene
Compartment Confidence
nucleus 5
cytosol 3
mitochondrion 1

Gene Ontology (GO) - Cellular Components for SURF6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001652 granular component ISS --
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm IEA --
GO:0005730 nucleolus TAS 10675619
GO:0022625 cytosolic large ribosomal subunit IBA --
genes like me logo Genes that share ontologies with SURF6: view

Pathways & Interactions for SURF6 Gene

SuperPathways for SURF6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SURF6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042254 ribosome biogenesis IEA --
GO:0042273 ribosomal large subunit biogenesis IBA --
GO:0042274 ribosomal small subunit biogenesis IBA --
genes like me logo Genes that share ontologies with SURF6: view

No data available for Pathways by source and SIGNOR curated interactions for SURF6 Gene

Drugs & Compounds for SURF6 Gene

No Compound Related Data Available

Transcripts for SURF6 Gene

mRNA/cDNA for SURF6 Gene

Unigene Clusters for SURF6 Gene

Surfeit 6:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SURF6 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4
SP1:
SP2: -

Relevant External Links for SURF6 Gene

GeneLoc Exon Structure for
SURF6
ECgene alternative splicing isoforms for
SURF6

Expression for SURF6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SURF6 Gene

Protein differential expression in normal tissues from HIPED for SURF6 Gene

This gene is overexpressed in Lung (25.5) and Peripheral blood mononuclear cells (23.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SURF6 Gene



Protein tissue co-expression partners for SURF6 Gene

NURSA nuclear receptor signaling pathways regulating expression of SURF6 Gene:

SURF6

SOURCE GeneReport for Unigene cluster for SURF6 Gene:

Hs.274430

Evidence on tissue expression from TISSUES for SURF6 Gene

  • Lung(4.2)
  • Nervous system(2.2)
genes like me logo Genes that share expression patterns with SURF6: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SURF6 Gene

Orthologs for SURF6 Gene

This gene was present in the common ancestor of animals.

Orthologs for SURF6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SURF6 34 35
  • 99.45 (n)
cow
(Bos Taurus)
Mammalia SURF6 34 35
  • 79.83 (n)
rat
(Rattus norvegicus)
Mammalia Surf6 34
  • 77.71 (n)
dog
(Canis familiaris)
Mammalia SURF6 34 35
  • 77.65 (n)
-- 35
  • 68 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Surf6 34 16 35
  • 77.5 (n)
oppossum
(Monodelphis domestica)
Mammalia SURF6 35
  • 63 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SURF6 35
  • 49 (a)
OneToOne
chicken
(Gallus gallus)
Aves SURF6 34 35
  • 56.85 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia surf6 34
  • 54.53 (n)
Str.415 34
African clawed frog
(Xenopus laevis)
Amphibia surf6 34
zebrafish
(Danio rerio)
Actinopterygii surf6 34 35
  • 51.67 (n)
zgc64008 34
fruit fly
(Drosophila melanogaster)
Insecta Surf6 35
  • 19 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea ZK546.14 35
  • 18 (a)
OneToOne
Species where no ortholog for SURF6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SURF6 Gene

ENSEMBL:
Gene Tree for SURF6 (if available)
TreeFam:
Gene Tree for SURF6 (if available)

Paralogs for SURF6 Gene

Pseudogenes.org Pseudogenes for SURF6 Gene

genes like me logo Genes that share paralogs with SURF6: view

No data available for Paralogs for SURF6 Gene

Variants for SURF6 Gene

Sequence variations from dbSNP and Humsavar for SURF6 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000048160 -- 133,337,531(+) AACCC(C/T)GTCTC upstream-variant-2KB
rs1000122228 -- 133,336,305(+) GCGGG(C/G)CGCAC upstream-variant-2KB
rs1000228948 -- 133,332,522(+) CAGCC(C/T)GCCCA intron-variant
rs1000753728 -- 133,336,398(+) TCACC(C/G)CGGTC upstream-variant-2KB
rs1001206222 -- 133,334,249(+) ACTCC(C/T)GTGAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SURF6 Gene

Variant ID Type Subtype PubMed ID
esv2739138 CNV deletion 23290073
esv3621939 CNV loss 21293372
nsv1125319 OTHER inversion 24896259

Variation tolerance for SURF6 Gene

Residual Variation Intolerance Score: 43.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.58; 91.24% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SURF6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SURF6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SURF6 Gene

Disorders for SURF6 Gene

Relevant External Links for SURF6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SURF6

No disorders were found for SURF6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SURF6 Gene

Publications for SURF6 Gene

  1. Isolation and genomic analysis of the human surf-6 gene: a member of the Surfeit locus. (PMID: 10675619) Magoulas C. … Fried M. (Gene 2000) 3 4 22 64
  2. [Overexpression of the nucleolar protein SURF-6 in mouse fibroblasts NIH/3T3 leads to stabilisation of intragenic transcribed spacers of the pre-rRNA]. (PMID: 21063453) Polzikov M.A. … Zatsepina O.V. (Bioorg. Khim. 2010) 2 3 64
  3. Identification of an evolutionary conserved SURF-6 domain in a family of nucleolar proteins extending from human to yeast. (PMID: 15629442) Polzikov M. … Magoulas C. (Biochem. Biophys. Res. Commun. 2005) 2 3 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. The human homologue of the mouse Surf5 gene encodes multiple alternatively spliced transcripts. (PMID: 11891058) Angiolillo A. … Pietropaolo C. (Gene 2002) 3 4 64

Products for SURF6 Gene

Sources for SURF6 Gene

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