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SURF2 Gene

protein-coding   GIFtS: 52
GCID: GC09P136223

Surfeit 2

  Search for SURF2
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Surfeit 21 2
Surfeit Locus Protein 21 2
SURF-22
Surf-23

External Ids:    HGNC: 114751   Entrez Gene: 68352   Ensembl: ENSG000001482917   OMIM: 1856305   UniProtKB: Q155273   

Export aliases for SURF2 gene to outside databases

Previous GC identifers: GC09P127313 GC09P127780 GC09P129577 GC09P131499 GC09P133252 GC09P135213 GC09P105723


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for SURF2 Gene:
This gene shares a bidirectional promoter with surfeit 1 (SURF1; GeneID: 6834), which is located on the opposite
strand. It encodes a conserved protein that is expressed in a variety of tissues. (provided by RefSeq, Jul 2013)

GeneCards Summary for SURF2 Gene:
SURF2 (surfeit 2) is a protein-coding gene.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000009.11  NC_018920.2  NT_008470.20  
Regulatory elements:
   Regulatory transcription factor binding sites in the SURF2 gene promoter:
         ER-alpha   HTF   Pax-2   Pax-2a   FOXL1   PPAR-gamma1   Pax-2b   HOXA5   Sox9   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSURF2 promoter sequence
   Search Chromatin IP Primers for SURF2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SURF2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q34.2   Ensembl cytogenetic band:  9q34.2   HGNC cytogenetic band: 9q33-q34

SURF2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SURF2 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09P136223:  view genomic region     (about GC identifiers)

Start:
136,223,421 bp from pter      End:
136,228,045 bp from pter
Size:
4,625 bases      Orientation:
plus strand

1 alternative location:
Chr9+,NW_003315925 182,639-187,258     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: SURF2_HUMAN, Q15527 (See protein sequence)
Recommended Name: Surfeit locus protein 2  
Size: 256 amino acids; 29648 Da
Secondary accessions: Q6IBP9 Q96CD1

Explore the universe of human proteins at neXtProt for SURF2: NX_Q15527

Explore proteomics data for SURF2 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See SURF2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_059973.4  NP_001265857.1  

    ENSEMBL proteins: 
     ENSP00000361032  

    SURF2 Human Recombinant Protein Products:

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    SURF2 Assay Products:

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    Search eBioscience for ELISAs for SURF2 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR008833 Surf2

    Graphical View of Domain Structure for InterPro Entry Q15527

    ProtoNet protein and cluster: Q15527

    1 Blocks protein domain: IPB008833 Surfeit locus 2

    UniProtKB/Swiss-Prot: SURF2_HUMAN, Q15527
    Similarity: Belongs to the SURF2 family


    Find genes that share domains with SURF2           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:
         Genatlas biochemistry entry for SURF2:
    surfeit 2 (see SURF@)

         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
         
    Find genes that share ontologies with SURF2           About GenesLikeMe


    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for SURF2
       inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for SURF2

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for SURF2
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for SURF2

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    miRTarBase miRNAs that target SURF2:
    hsa-mir-484 (MIRT041981)

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    GenScript: all cDNA clones in your preferred vector: SURF2 (NM_017503)
    Browse Sino Biological Human cDNA Clones
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SURF2

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    extracellular2
    cytosol1

    Gene Ontology (GO): 4 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0005634nucleus IDA--
    GO:0005730nucleolus IDA--
    GO:0005886plasma membrane IDA--

    Find genes that share ontologies with SURF2           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SURF2
    Interactions:

        Search GeneGlobe Interaction Network for SURF2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 8)

    Selected Interacting proteins for SURF2 (Q155272, 3 ENSP000003610324) via UniProtKB, MINT, STRING, and/or I2D (see all 9)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    B4GALT3O605122, 3, ENSP000003209654MINT-63176 I2D: score=4 STRING: ENSP00000320965
    RPL5P467772, 3, ENSP000003593454MINT-8272421 I2D: score=2 STRING: ENSP00000359345
    ZNF331Q9NQX62, 3, ENSP000002531444MINT-8272432 I2D: score=2 STRING: ENSP00000253144
    NPTNQ9Y6392, 3, ENSP000002904014MINT-8272410 I2D: score=2 STRING: ENSP00000290401
    PLAURQ034052, 3, ENSP000003393284MINT-64051 I2D: score=4 STRING: ENSP00000339328
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    Find genes that share ontologies with SURF2           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SURF2



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for SURF2 gene (2 alternative transcripts): 
    NM_017503.4  NM_001278928.1  

    Unigene Cluster for SURF2:

    Surfeit 2
    Hs.159448  [show with all ESTs]
    Unigene Representative Sequence: BM910812
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000371964(uc004cdi.2) ENST00000495524 ENST00000486887
    miRNA
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    Predesigned siRNA for gene silencing in human, mouse, rat SURF2
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SURF2
    Primer
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat SURF2
      QuantiTect SYBR Green Assays in human, mouse, rat SURF2
      QuantiFast Probe-based Assays in human, mouse, rat SURF2

    Additional mRNA sequence: 

    BC014411.1 CR456753.1 Z35094.1 

    7 DOTS entries:

    DT.92423075  DT.111695  DT.95160197  DT.97807686  DT.102823899  DT.100024022  DT.100711209 

    Selected AceView cDNA sequences (see all 3637):

    BQ891882 BQ065042 BE745587 BM908640 BU166745 BG753230 BI259940 CD366491 
    BF309370 BE258172 BQ438038 BU845223 BU542163 AA315903 AI719450 BQ651227 
    BQ933589 BU527881 BM855153 BF932939 BU956578 BM912707 CA422336 BQ680380 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for SURF2 (see all 8)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b ^ 7
    SP1:                                            -     -           -     -                                 
    SP2:                                                  -           -     -                                 
    SP3:                                            -     -           -     -     -     -                     
    SP4:                                            -     -           -     -     -     -     -     -         
    SP5:                                            -     -                                                   


    ECgene alternative splicing isoforms for SURF2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SURF2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCGTGAAAAA
    SURF2 Expression
    About this image

    SURF2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SURF2 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.159448
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for SURF2 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Surf21 , 5 surfeit gene 21, 5 73.59(n)1
    69.8(a)1
      2 (19.10 cM)5
    209311  NM_013678.21  NP_038706.11 
     269163675 
    chicken
    (Gallus gallus)
    Aves SURF21 surfeit 2 65.98(n)
    62.55(a)
      417156  NM_001045829.1  NP_001039294.1 
    African clawed frog
    (Xenopus laevis)
    Amphibia surf2-prov2 surfeit 2 71.71(n)    BC041507.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1010841 zgc:101084 55.36(n)
    46.26(a)
      445173  NM_001003567.2  NP_001003567.1 


    ENSEMBL Gene Tree for SURF2 (if available)
    TreeFam Gene Tree for SURF2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SURF2 (see all 87)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 9 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs286275471,2
    C,F--136225415(+) GCACCG/ATGGAT 1 -- int15Minor allele frequency- A:0.05NA EA 246
    rs285484241,2
    C,F--136225476(+) GAGCCC/TCAGGA 1 -- int14Minor allele frequency- T:0.05NA EA 244
    rs758248031,2
    C,F--136225600(+) GACACC/TTGGCT 1 -- int11Minor allele frequency- T:0.03WA 118
    rs286759771,2
    C,F,H--136225611(+) AGAGTG/AGAGCG 1 -- int19Minor allele frequency- A:0.17NS NA WA 1188
    rs1501195631,2
    --136225616(+) GGAGCA/GTAGGC 1 -- int10--------
    rs341045591,2
    C--136225639(+) GGGCAG/CTGTCC 1 -- int12Minor allele frequency- C:0.08NA 122
    rs1384235561,2
    C--136225722(+) GGAGCA/GGACAG 1 -- int10--------
    rs1180906191,2
    C,F--136225846(+) TCTCAA/GGTAGA 1 -- int11Minor allele frequency- G:0.01EA 120
    rs1488462051,2
    --136225938(+) GCTCAG/TGGGTG 1 -- int10--------
    rs1897708231,2
    C--136226012(+) CTGTGA/GAGCTG 1 -- int10--------

    HapMap Linkage Disequilibrium report for SURF2 (136223421 - 136228045 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 7 variations for SURF2:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2739138CNV Deletion23290073
    nsv894081CNV Loss21882294
    nsv894076CNV Loss21882294
    dgv8325n71CNV Loss21882294
    nsv894079CNV Loss21882294
    nsv894080CNV Loss21882294
    nsv894057CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing SURF2
    DNA2.0 Custom Variant and Variant Library Synthesis for SURF2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 185630    OMIM disorders: --


    Find genes that share disorders with SURF2           About GenesLikeMe

    Genetic Association Database (GAD): SURF2
    Human Genome Epidemiology (HuGE) Navigator: SURF2 (3 documents)

    Export disorders for SURF2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SURF2 gene, integrated from 10 sources (see all 23):
    (articles sorted by number of sources associating them with SURF2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (Diabetes Care 2010)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. The Surf-1 and Surf-2 genes and their essential bidirectional promoter elements are conserved between mouse and human. (PubMed id 7702754)1, 2 Lennard A.... Fried M. (DNA Cell Biol. 1994)
    4. Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease. (PubMed id 22703881)1 Tang W....Folsom A.R. (Am. J. Hum. Genet. 2012)
    5. A high-throughput approach for measuring temporal changes in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (Nat. Methods 2012)
    6. A directed protein interaction network for investigating intracellular signal transduction. (PubMed id 21900206)1 Vinayagam A....Wanker E.E. (Sci Signal 2011)
    7. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (Sci. Signal. 2011)
    8. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (J. Biol. Chem. 2011)
    9. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (Sci. Signal. 2010)
    10. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330)2 Gauci S....Mohammed S. (Anal. Chem. 2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 6835 HGNC: 11475 AceView: DBHandRPL7AandSURF2 Ensembl:ENSG00000148291 euGenes: HUgn6835
    ECgene: SURF2 H-InvDB: SURF2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SURF2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SURF2 gene:
    Search GeneIP for patents involving SURF2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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