SUPT5H Gene
protein-coding GIFtS : 57
GCID: GC19 P039936
suppressor of Ty 5 homolog (S. cerevisiae) (Previous name: suppressor of Ty (S.cerevisiae) 5 homolog )
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Aliasesfor SUPT5H gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Suppressor Of Ty 5 Homolog (S. Cerevisiae) 1 2 HSPT51 SPT51 2 3 5 Tat-Cotransactivator 1 Protein2 3 SPT5H1 2 3 FLJ341571 DRB Sensitivity-Inducing Factor 160 KDa Subunit2 3 Suppressor Of Ty (S.Cerevisiae) 5 Homolog1 DRB Sensitivity-Inducing Factor Large Subunit2 3 Tat-CT12 DSIF Large Subunit2 3 Transcription Elongation Factor SPT52 DSIF P1602 3 Tat-CT1 Protein3
Export aliases for SUPT5H gene to outside databases Previous GC identifers: GC19P040577 GC19P040327 GC19P044612 GC19P044628 GC19P036382
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Summariesfor SUPT5H gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: SPT5H_HUMAN, O00267 Function : Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates mRNA processing andtranscription elongation by RNA polymerase II. DSIF positively regulates mRNA capping by stimulating the mRNA guanylyltransferase activity of RNGTT/CAP1A. DSIF also acts cooperatively with the negative elongation factor complex (NELF complex) to enhance transcriptional pausing at sites proximal to the promoter. Transcriptional pausing may facilitate the assembly of an elongation competent RNA polymerase II complex. DSIF and NELF promote pausing by inhibition of the transcription elongation factor TFIIS/S-II. TFIIS/S-II binds to RNA polymerase II at transcription pause sites and stimulates the weak intrinsic nuclease activity of the enzyme. Cleavage of blocked transcripts by RNA polymerase II promotes the resumption of transcription from the new 3' terminus and may allow repeated attempts at transcription through natural pause sites. DSIF can also positively regulate transcriptional elongation and is required for the efficient activation of transcriptional elongation by the HIV-1 nuclear transcriptional activator, Tat. DSIF acts to suppress transcriptional pausing in transcripts derived from the HIV-1 LTR and blocks premature release of HIV-1 transcripts at terminator sequences Gene Wiki entry for SUPT5H
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Genomic Viewsfor SUPT5H gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000019.9 NC_018930.1 NT_011109.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SUPT5H gene promoter: HSF2 ZIC2/Zic2 Pax-4a YY1 GATA-1 Other transcription factors Search SABiosciences Chromatin IP Primers for SUPT5H Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SUPT5H
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 19q13 Ensembl cytogenetic band: 19q13.2 HGNC cytogenetic band: 19q13 SUPT5H Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P039936: view genomic region
(about GC identifiers )
Start:
39,936,186 bp from pter
End:
39,967,310 bp from pter
Size:
31,125 bases
Orientation:
plus strand
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Proteinsfor SUPT5H gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SPT5H_HUMAN, O00267 (See
protein sequence )Recommended Name: Transcription elongation factor SPT5 Size : 1087 amino acids; 121000 Da
Subunit : Interacts with SUPT4H1 to form DSIF. DSIF interacts with the positive transcription elongation factor bcomplex (P-TEFb complex), which is composed of CDK9 and cyclin-T (CCNT1 or CCNT2). DSIF interacts with RNA polymerase II, and this interaction is reduced by phosphorylation of the C-terminal domain (CTD) of POLR2A by P-TEFb. DSIF also interacts with the NELF complex, which is composed of WHSC2/NELFA, COBRA1/NELFB, TH1L/NELFD and RDBP/NELFE, and this interaction occurs following prior binding of DSIF to RNA polymerase II. DSIF also interacts with PRMT1/HRMT1L2, HTATSF1/TATSF1, RNGTT/CAP1A, PRMT5/SKB1, SUPT6H, and can interact with PIN1. Component of a complex which is at least composed of HTATSF1/Tat-SF1, the P-TEFb complex components CDK9 and CCNT1, RNA polymerase II, SUPT5H, and NCL/nucleolin
Subcellular location : Nucleus
Sequence caution : Sequence=BAD92494.1; Type=Erroneous initiation;
4 PDB 3D structures from and Proteopedia for SUPT5H :2DO3 (3D)
  2E6Z (3D)
  2E70 (3D)
  3H7H (3D)
 
Secondary accessions : O43279 Q59G52 Q99639Alternative splicing : 2 isoforms : O00267-1 O00267-2 Explore the universe of human proteins at neXtProt for SUPT5H: NX_O00267 Post-translational modifications:
Methylated by PRMT1/HRMT1L2 and PRMT5/SKB1. Methylation negatively regulates interaction with P-TEFb and RNA polymerase II1
Phosphorylated by CDK7 and CDK9. Phosphorylation by P-TEFb alleviates transcriptional pausing and can stimulate transcriptional elongation from the HIV-1 LTR. P-TEFb dependent phosphorylation is stimulated by the HIV-1 Tat protein. Phosphorylation may also stimulate interaction with PIN1. Bulk phosphorylation occurs predominantly in mitosis1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O00267 SUPT5H Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (4 alternative transcripts):
NP_001104490.1 NP_001124296.1 NP_001124297.1 NP_003160.2 ENSEMBL proteins: ENSP00000404029 ENSP00000384505 ENSP00000352117 Reactome Protein details: O00267 Human Recombinant Protein Products: Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view) : About this table
SUPT5H for ontologies About GeneDecksing SUPT5H Antibody Products: Assay Products for SUPT5H:
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Protein
Domains / Familiesfor SUPT5H gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SUPT5H for domains About GeneDecksing 5/7 InterPro domains/families (see all 7 ):
Graphical View of Domain Structure for InterPro Entry O00267 ProtoNet protein and cluster: O00267
1 Blocks protein family : IPB006646 KOW (Kyprides UniProtKB/Swiss-Prot: SPT5H_HUMAN, O00267 Similarity : Belongs to the SPT5 familySimilarity : Contains 5 KOW domains
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Functionfor SUPT5H gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: SPT5H_HUMAN, O00267 Function : Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates mRNA processing andtranscription elongation by RNA polymerase II. DSIF positively regulates mRNA capping by stimulating the mRNA guanylyltransferase activity of RNGTT/CAP1A. DSIF also acts cooperatively with the negative elongation factor complex (NELF complex) to enhance transcriptional pausing at sites proximal to the promoter. Transcriptional pausing may facilitate the assembly of an elongation competent RNA polymerase II complex. DSIF and NELF promote pausing by inhibition of the transcription elongation factor TFIIS/S-II. TFIIS/S-II binds to RNA polymerase II at transcription pause sites and stimulates the weak intrinsic nuclease activity of the enzyme. Cleavage of blocked transcripts by RNA polymerase II promotes the resumption of transcription from the new 3' terminus and may allow repeated attempts at transcription through natural pause sites. DSIF can also positively regulate transcriptional elongation and is required for the efficient activation of transcriptional elongation by the HIV-1 nuclear transcriptional activator, Tat. DSIF acts to suppress transcriptional pausing in transcripts derived from the HIV-1 LTR and blocks premature release of HIV-1 transcripts at terminator sequences
Genatlas biochemistry entry for SUPT5H : putative chromatin structure regulator yeast Spt5 homolog,(histones group) Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SUPT5H (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SUPT5H (see all 4 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): SUPT5H (NM_003169 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SUPT5H Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SUPT5H
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SUPT5H
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view) : About this table
SUPT5H for ontologies About GeneDecksing 4 GenomeRNAi human phenotypes for SUPT5H :
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Pathways & Interactionsfor SUPT5H gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/8 super-pathways (see all 8 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Formation of RNA Pol II elongation complex 2 Late Phase of HIV Life Cycle 3 Transcription 4 mRNA Splicing - Major Pathway 5 Chromatin Regulation / Acetylation
Pathway sources See GeneCards unified pathways Show all pathways 1
Cell Signaling Technology (CST) Pathway for SUPT5H 1 BioSystems Pathway for SUPT5H 5/27
Reactome Pathways for SUPT5H (see all 27 )
SUPT5H for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for SUPT5H 5/199 Interacting proteins for SUPT5H (O00267 1 , 2 , 3 ) via UniProtKB, MINT, STRING, and/or I2D (see all 199 )About this table Gene Ontology (GO): 5/17 biological process terms (GO ID links to tree view) (see all 17 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0000122 negative regulation of transcription from RNA polymerase II promoter
IDA 9450929 GO:0006338 chromatin remodeling
NAS 10075709 GO:0006354 DNA-dependent transcription, elongation
IDA 10075709 GO:0006366 transcription from RNA polymerase II promoter
TAS -- GO:0006368 transcription elongation from RNA polymerase II promoter
TAS --
SUPT5H for ontologies About GeneDecksing
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Drugs & Compoundsfor SUPT5H gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
SUPT5H for compounds About GeneDecksing Browse Tocris compounds for SUPT5H 1 Novoseek chemical compound relationship for SUPT5H gene About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
5,6-dichloro-1-beta-d-ribofuranosylbenzimidazole
87
4
19860741 (1), 9450929 (1), 10075709 (1)
Search CenterWatch for drugs/clinical trials and news about SUPT5H / SPT5H
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Transcriptsfor SUPT5H gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SUPT5H gene (4 alternative transcripts): NM_001111020.2 NM_001130824.1 NM_001130825.1 NM_003169.3 Unigene Cluster for SUPT5H:
Suppressor of Ty 5 homolog (S. cerevisiae) Hs.631604 [show with all ESTs ] Unigene Representative Sequence: NM_003169 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000432763 (uc002olo.4 uc002olp.4 uc002oln.4 ) ENST00000402194 (uc010xvb.1 uc002olq.4 uc002ols.1 uc010egp.1 )ENST00000359191 (uc002olr.4 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SUPT5H (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SUPT5H (see all 4 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): SUPT5H (NM_003169 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SUPT5H Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SUPT5H
Additional cDNA sequence: AB000516.1 AB209257.1 AF040253.1 AF052165.1 AK091476.1 AK295137.1 AK296117.1 AK302954.1 AK303480.1 BC024203.2 BC113039.1 U56402.1 Y12790.1
24/32 DOTS entries (see all 32 ): DT.91760765 DT.452135
DT.100048831 DT.100809109 DT.100820836 DT.121440403 DT.100820829 DT.100820832 DT.86993018 DT.121440406 DT.95320049 DT.121440285 DT.121440427 DT.97864300 DT.99993811 DT.100042588 DT.100820835 DT.121440442 DT.95259689 DT.40115069 DT.95211634 DT.100732126 DT.121440425 DT.121440428 24/471 AceView cDNA sequences (see all 471 ):
CN483040 BI087787 NM_003169 BG202116 BG413485 BC024203 BE792558 CR609373 BM835241 BI962995 Y12790 BF726491 BE930312 BE879736 AA075157 BG394847 BM712073 BQ883127 AA337652 CD722318 BU728276 BU947734 BQ941487 BF437957 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for SUPT5H (see all 8 ) About this scheme ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b · 14c ^ 15 ^ 16 ^ 17a · 17b ^ SP1 :                   -                     -               SP2 :                                                     SP3 :                                 -   -   -   -   -   -   -   -   -   -   SP4 :     -               -                                   SP5 :                                                    
ExUns: 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25a · 25b ^ 26 ^ 27a · 27b ^ 28a · 28b ^ 29a · 29b ^ 30a · 30b SP1 :                           -   -         SP2 :                                     SP3 : -   -   -   -   -   -   -   -                       SP4 :                                     SP5 :                                    
ECgene alternative splicing isoforms for SUPT5H
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Expression for SUPT5H gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SUPT5H expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TGCTCTGTGT
About this image See SUPT5H Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SUPT5H SOURCE GeneReport for Unigene cluster: Hs.631604 UniProtKB/Swiss-Prot: SPT5H_HUMAN, O00267 Tissue specificity : Ubiquitously expressed SABiosciences Custom PCR Arrays for SUPT5H Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SUPT5HBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SUPT5H QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SUPT5H QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SUPT5H In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SUPT5H
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Orthologsfor SUPT5H gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for SUPT5H gene from 10/34 species (see all 34 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
mouse (Mus musculus)
Mammalia
Supt55 Supt5h1
suppressor of Ty 5 homolog (S. cerevisiae)1, 5
88.99(n) 1 97.96(a) 1
 
7 (16.68 cM) 5 20924 1 NM_013676.1 1 NP_038704.1 1 28314898 5
chicken (Gallus gallus)
Aves
SUPT5H1
suppressor of Ty 5 homolog (S. cerevisiae)
84.65(n) 96.19(a)
 
426493 NM_001031384.1 NP_001026555.1
lizard (Anolis carolinensis)
Reptilia
SUPT5H6
--
95(a)
1 ↔ 1
GL343635.1(350882-380574)
African clawed frog (Xenopus laevis)
Amphibia
Xl.50442
Xenopus laevis transcribed sequence with moderate similarity to protein refNP_003160.1 (H.sapiens) suppressor of Ty 5 homolog (S. cerevisiae); suppressor of Ty (S.cerevisiae) 5 homolog [Homo sapiens] less
76.12(n)
 
CA971229.1
zebrafish (Danio rerio)
Actinopterygii
supt5h2
suppressor of Ty 5 homolog (S. cerevisiae)
79.52(n)
 
64275 AF288409.1
fruit fly (Drosophila melanogaster)
Insecta
Spt51 , 3
transcription transcription elongation factor3 CG7626-PA1
53(a) 3 58.6(n) 1 56.83(a) 1
 
53442 1 NM_144353.3 1 NP_652610.1 1
worm (Caenorhabditis elegans)
Secernentea
spt-51
Protein SPT-5
49.25(n) 44.01(a)
 
178143 NM_069882.4 NP_502283.1
baker's yeast (Saccharomyces cerevisiae)
Saccharomycetes
SPT5(YML010W)4 SPT51
Protein involved in regulating Pol I and Pol II transcription and pre-mRNA processing; forms a complex with Spt4p; contains a C-terminal repeat domain that is a target for phosphorylation by Sgv1p less 4 Spt5p1
42.65(n) 1 32.6(a) 1
 
13(247677-250868) 4 854999 1, 4 NP_013703.1 1, 4
thale cress (Arabidopsis thaliana)
eudicotyledons
GTA21
global transcription factor group A2
46.16(n) 38.37(a)
 
826391 NM_116904.5 NP_192575.3
rice (Oryza sativa)
Liliopsida
Os02g07720001
hypothetical protein
47.16(n) 37.76(a)
 
9267296 NM_001186230.1 NP_001173159.1
ENSEMBL Gene Tree for SUPT5H (if available)TreeFam Gene Tree for SUPT5H (if available)
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Paralogsfor SUPT5H gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor SUPT5H gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
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Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 19 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SUPT5H (39936186 - 39967310 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for SUPT5H: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SUPT5H
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Disorders
/ Diseasesfor SUPT5H gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SUPT5H for disorders About GeneDecksing
OMIM gene information: 602102
OMIM disorders : --4 diseases for SUPT5H : About MalaCards wolf-hirschhorn syndrome immunodeficiency hepatitis malaria 1 disease from the University of Copenhagen DISEASES database for SUPT5H :Wolf-Hirschhorn syndrome 2 Novoseek disease relationships for SUPT5H gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
immunodeficiency
29.9
1
16107696 (1)
shock
0
2
11040216 (1), 15380072 (1)
Export disorders for SUPT5H gene to outside databases
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Publicationsfor SUPT5H gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SUPT5H gene, integrated from 9 sources (see all 95 ): (articles sorted by number of sources associating them with SUPT5H) Utopia : connect your pdf to the dynamic world of online information
Isolation, sequencing, and mapping of the human homologue of the yeast transcription factor, SPT5. (PubMed id 8975720) 1 , 2 , 3, 9 Chiang P.-W.... Kurnit D.M. (1996) Methylation of SPT5 regulates its interaction with RNA polymerase II and transcriptional elongation properties. (PubMed id 12718890) 1 , 2 , 9 Kwak Y.T.... Gaynor R.B. (2003) Locus-specific requirements for Spt5 in transcriptional activation and repression in Drosophila. (PubMed id 15380072) 1 , 2 , 9 Jennings B.H.... Ish-Horowicz D. (2004) Positive transcription elongation factor B phosphorylates hSPT5 and RNA polymerase II carboxyl-terminal domain independently of cyclin- dependent kinase-activating kinase. (PubMed id 11145967) 1 , 2 , 9 Kim J.B. and Sharp P.A. (2001) Tat-SF1 protein associates with RAP30 and human SPT5 proteins. (PubMed id 10454543) 1 , 2 , 9 Kim J.B.... Sharp P.A. (1999) Coordination of transcription factor phosphorylation and histone methylation by the P-TEFb kinase during human immunodeficiency virus type 1 transcription. (PubMed id 15564463) 1 , 2 , 9 Zhou M.... Kumar A. (2004) Structure and function of the human transcription elongation factor DSIF. (PubMed id 10075709) 1 , 2 , 9 Yamaguchi Y.... Handa H. (1999) DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. (PubMed id 9450929) 1 , 2 , 9 Wada T....Handa H. (1998) Human Spt6 stimulates transcription elongation by RNA polymerase II in vitro. (PubMed id 15060154) 1 , 2 , 9 Endoh M.... Handa H. (2004) Functional interactions of RNA-capping enzyme with factors that positively and negatively regulate promoter escape by RNA polymerase II. (PubMed id 15136722) 1 , 2 , 9 Mandal S.S.... Reinberg D. (2004)
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External Searches for SUPT5H gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SUPT5H gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing SUPT5H gene
(According to HUGE )
About This Section --
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Specialized Databases showing SUPT5H gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for SUPT5H gene: Search GeneIP for patents involving SUPT5H GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SUPT5H gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for SUPT5H OriGene shRNA RFP for SUPT5H OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SUPT5H OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SUPT5H OriGene Protein Over-expression Lysate for SUPT5H Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SUPT5H OriGene 3'-UTR Clone for SUPT5H OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SUPT5H OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SUPT5H Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SUPT5H OriGene Custom Protein Services for SUPT5H OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SUPT5H QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SUPT5H QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SUPT5H QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SUPT5H QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SUPT5H QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SUPT5H
Antibodies & Assays for SUPT5H   (SPT5)
Search Tocris compounds for SUPT5H
SUPT5H Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SUPT5H
Search ThermoFisher Antibodies for SUPT5H
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SUPT5H
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