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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SUPT4H1 Gene

protein-coding   GIFtS: 57
GCID: GC17M056422

suppressor of Ty 4 homolog 1 (S. cerevisiae)

(Previous name: suppressor of Ty (S.cerevisiae) 4 homolog 1 )
(Previous symbol: SUPT4H)
 Explore 3 diseases affiliated with
SUPT4H1 via our new
 Human Malady Compendium 
Biological research products
for SUPT4H1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Suppressor Of Ty 4 Homolog 1 (S. Cerevisiae)1 2     SPT42
SPT4H1 2 3     Small HSpt4 Subunit2
SUPT4H1 2 3     Transcription Elongation Factor SPT42
DRB Sensitivity-Inducing Factor 14 KDa Subunit2 3     DRB Sensitivity-Inducing Factor Small Subunit3
DSIF P142 3     DSIF Small Subunit3
Suppressor Of Ty (S.Cerevisiae) 4 Homolog 11     HSPT41

External Ids:    HGNC: 114671   Entrez Gene: 68272   Ensembl: ENSG000002132467   OMIM: 6035555   UniProtKB: P632723   

Export aliases for SUPT4H1 gene to outside databases

Previous GC identifers: GC17M056166 GC17M058904 GC17M056764 GC17M056897 GC17M053777 GC17M051783


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for SUPT4H1:
This gene encodes the small subunit of DRB (5,6-dichloro-1-beta-d-ribofuranosylbenzimidazole) sensitivity-inducing
factor (DSIF) complex, which regulates mRNA processing and transcription elongation by RNA polymerase II. The encoded
protein is localized to the nucleus and interacts with the large subunit (SUPT5H) to form the DSIF complex. Related
pseudogenes have been identified on chromosomes 2 and 12. Alternatively spliced transcript variants have been found
for this gene. (provided by RefSeq, Nov 2012)

UniProtKB/Swiss-Prot: SPT4H_HUMAN, P63272
Function: Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates mRNA processing and
transcription elongation by RNA polymerase II. DSIF positively regulates mRNA capping by stimulating the mRNA
guanylyltransferase activity of RNGTT/CAP1A. DSIF also acts cooperatively with the negative elongation factor complex
(NELF complex) to enhance transcriptional pausing at sites proximal to the promoter. Transcriptional pausing may
facilitate the assembly of an elongation competent RNA polymerase II complex. DSIF and NELF promote pausing by
inhibition of the transcription elongation factor TFIIS/S-II. TFIIS/S-II binds to RNA polymerase II at transcription
pause sites and stimulates the weak intrinsic nuclease activity of the enzyme. Cleavage of blocked transcripts by RNA
polymerase II promotes the resumption of transcription from the new 3' terminus and may allow repeated attempts at
transcription through natural pause sites. DSIF can also positively regulate transcriptional elongation and is
required for the efficient activation of transcriptional elongation by the HIV-1 nuclear transcriptional activator,
Tat. DSIF acts to suppress transcriptional pausing in transcripts derived from the HIV-1 LTR and blocks premature
release of HIV-1 transcripts at terminator sequences

Gene Wiki entry for SUPT4H1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000017.10  NC_018928.1  NT_010783.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SUPT4H1 gene promoter:
         C/EBPbeta   Pax-5   p53   NF-kappaB   c-Ets-1   FOXI1   NF-kappaB2   FOXO1a   NF-kappaB1   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSUPT4H1 promoter sequence
   Search SABiosciences Chromatin IP Primers for SUPT4H1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SUPT4H1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q21-q23   Ensembl cytogenetic band:  17q22   HGNC cytogenetic band: 17q21-q23

SUPT4H1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SUPT4H1 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M056422:  view genomic region     (about GC identifiers)

Start:
56,422,539 bp from pter      End:
56,430,454 bp from pter
Size:
7,916 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: SPT4H_HUMAN, P63272 (See protein sequence)
Recommended Name: Transcription elongation factor SPT4  
Size: 117 amino acids; 13193 Da
Subunit: Interacts with SUPT5H to form DSIF. DSIF interacts with the positive transcription elongation factor b complex
(P-TEFb complex), which is composed of CDK9 and cyclin-T (CCNT1 or CCNT2). DSIF interacts with RNA polymerase II, and
this interaction is reduced by phosphorylation of the C-terminal domain (CTD) of POLR2A by P-TEFb. DSIF also interacts
with the NELF complex, which is composed of WHSC2/NELFA, COBRA1/NELFB, TH1L/NELFD and RDBP/NELFE, and this interaction
occurs following prior binding of DSIF to RNA polymerase II. DSIF also interacts with HRMT1L2/PRMT1, HTATSF1/TATSF1,
RNGTT/CAP1A, SKB1/PRMT5, SUPT6H, and can interact with PIN1
Subcellular location: Nucleus
1 PDB 3D structure from and Proteopedia for SUPT4H1:
3H7H (3D)    
Secondary accessions: B2R4X8 D3DTZ4 Q16550 Q62387 Q6ZP89

Explore the universe of human proteins at neXtProt for SUPT4H1: NX_P63272

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P63272

  • SUPT4H1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_003159.1  
    ENSEMBL proteins: 
     ENSP00000463979   ENSP00000225504   ENSP00000462100   ENSP00000464618   ENSP00000462670  
     ENSP00000462602  
    Reactome Protein details: P63272
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    Uscn Proteins for SUPT4H1

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA8649394
    GO:0005654nucleoplasm TAS--
    GO:0032044DSIF complex IDA9450929


    SUPT4H1 for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for SUPT4H1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    SUPT4H1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR022800 Spt4/RpoE2_Znf
     IPR016046 Spt4-like
     IPR009287 Spt4

    Graphical View of Domain Structure for InterPro Entry P63272

    ProtoNet protein and cluster: P63272

    1 Blocks protein family: IPB009287 Transcription initiation Spt4

    UniProtKB/Swiss-Prot: SPT4H_HUMAN, P63272
    Similarity: Belongs to the SPT4 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: SPT4H_HUMAN, P63272
    Function: Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates mRNA processing and
    transcription elongation by RNA polymerase II. DSIF positively regulates mRNA capping by stimulating the mRNA
    guanylyltransferase activity of RNGTT/CAP1A. DSIF also acts cooperatively with the negative elongation factor complex
    (NELF complex) to enhance transcriptional pausing at sites proximal to the promoter. Transcriptional pausing may
    facilitate the assembly of an elongation competent RNA polymerase II complex. DSIF and NELF promote pausing by
    inhibition of the transcription elongation factor TFIIS/S-II. TFIIS/S-II binds to RNA polymerase II at transcription
    pause sites and stimulates the weak intrinsic nuclease activity of the enzyme. Cleavage of blocked transcripts by RNA
    polymerase II promotes the resumption of transcription from the new 3' terminus and may allow repeated attempts at
    transcription through natural pause sites. DSIF can also positively regulate transcriptional elongation and is
    required for the efficient activation of transcriptional elongation by the HIV-1 nuclear transcriptional activator,
    Tat. DSIF acts to suppress transcriptional pausing in transcripts derived from the HIV-1 LTR and blocks premature
    release of HIV-1 transcripts at terminator sequences

         Genatlas biochemistry entry for SUPT4H1:
    putative chromatin structure regulator,yeast spt4 (suppressor of Ty) homolog,ubiquitously expressed

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    SwitchGear 3'UTR luciferase reporter plasmidSUPT4H1 3' UTR sequence
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    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003700sequence-specific DNA binding transcription factor activity TAS8649394
    GO:0005515protein binding IPI10075709
    GO:0008270zinc ion binding IEA--
    GO:0046982protein heterodimerization activity IPI9450929


    SUPT4H1 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for SUPT4H1:
     Downregulation of NF-kappaB pa  Downregulation of NF-kappaB pa 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/6 super-pathways (see all 6About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Formation of RNA Pol II elongation complex
    8/16 pathways (see all 16)
    RNA Polymerase II Transcription Elongation1.00
    HIV-1 elongation arrest and recovery0.74
    Formation of HIV-1 elongation complex in the absence of HIV-1 Tat1.00
    Pausing and recovery of HIV-1 elongation0.74
    Formation of RNA Pol II elongation complex 1.00
    Elongation arrest and recovery0.74
    Formation of HIV-1 elongation complex containing HIV-1 Tat0.98
    RNA Polymerase II Pre-transcription Events0.72
    2Late Phase of HIV Life Cycle
    Late Phase of HIV Life Cycle1.00
    HIV Life Cycle0.90
    3Transcription
    Transcription1.00
    RNA Polymerase II Transcription0.69
    4HIV Infection
    HIV Infection1.00
    5Disease
    Disease1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    5/23        Reactome Pathways for SUPT4H1 (see all 23)
        Formation of RNA Pol II elongation complex
    Pausing and recovery of Tat-mediated HIV-1 elongation
    Tat-mediated HIV-1 elongation arrest and recovery
    Tat-mediated elongation of the HIV-1 transcript
    Late Phase of HIV Life Cycle



    SUPT4H1 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SUPT4H1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/99 Interacting proteins for SUPT4H1 (P632721, 2, 3 ENSP000002255044) via UniProtKB, MINT, STRING, and/or I2D (see all 99)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HMP19Q9Y3282, 3, ENSP000003077224MINT-8272388 I2D: score=2 STRING: ENSP00000307722
    PDLIM1O001512, 3, ENSP000003603054MINT-8272399 I2D: score=2 STRING: ENSP00000360305
    SUPT5HO002671, 3EBI-727250,EBI-710464 I2D: score=5 
    LRIF1Q5T3J32, 3MINT-8272377 I2D: score=2 
    ANXA5P087582, 3, ENSP000002965114MINT-64710 I2D: score=4 STRING: ENSP00000296511
    About this table

    Gene Ontology (GO): 5/13 biological process terms (GO ID links to tree view) (see all 13):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000122negative regulation of transcription from RNA polymerase II promoter IDA9450929
    GO:0006338chromatin remodeling TAS8649394
    GO:0006355regulation of transcription, DNA-dependent TAS8786137
    GO:0006357regulation of transcription from RNA polymerase II promoter TAS8649394
    GO:0006366transcription from RNA polymerase II promoter TAS--


    SUPT4H1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for SUPT4H1
    Search CenterWatch for drugs/clinical trials and news about SUPT4H1 / SPT4H 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SUPT4H1 gene: 
    NM_003168.2  

    Unigene Cluster for SUPT4H1:

    Suppressor of Ty 4 homolog 1 (S. cerevisiae)
    Hs.439481  [show with all ESTs]
    Unigene Representative Sequence: BM543526
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000581166 ENST00000225504(uc002iwe.1) ENST00000577396 ENST00000581204
    ENST00000581540 ENST00000580947 ENST00000579289

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    SwitchGear 3'UTR luciferase reporter plasmidSUPT4H1 3' UTR sequence
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    Additional cDNA sequence: 

    AK129758.1 AK311986.1 BC002802.2 CR407663.1 NR_073470.1 U38817.1 U38818.1 U43923.1 

    15 DOTS entries:

    DT.454444  DT.100878569  DT.92443169  DT.100723596  DT.92443173  DT.100878567  DT.100878570  DT.95163091 
    DT.120989080  DT.120989095  DT.121140409  DT.95144558  DT.95163095  DT.95203281  DT.99942914 

    24/568 AceView cDNA sequences (see all 568):

    CA442492 BU738819 BQ020356 AI392769 BP370868 BX950905 BE617199 BX951329 
    BQ018762 AA310551 CB112138 AA297623 AA337910 BQ012821 BQ011725 BQ224372 
    BQ574860 AA669239 AU099670 BX951256 CA444131 BQ647050 AI871164 AI612846 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SUPT4H1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CCAAGGACTC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See SUPT4H1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SUPT4H1

    SOURCE GeneReport for Unigene cluster: Hs.439481

    UniProtKB/Swiss-Prot: SPT4H_HUMAN, P63272
    Tissue specificity: Widely expressed

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SUPT4H1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for SUPT4H1 gene from 8/31 species (see all 31)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Supt4a5
    Supt4h11
    suppressor of Ty 4 homolog 1 (S. cerevisiae)1, 5 94.87(n)1
    100(a)1
      11 (52.20 cM)5
    209221  NM_009296.11  NP_033322.11 
     877375525 
    chicken
    (Gallus gallus)
    Aves SUPT4H11 suppressor of Ty 4 homolog 1 (S. cerevisiae) 81.77(n)
    97.44(a)
      417470  XM_003642375.1  XP_003642423.1 
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.237552 Xenopus laevis transcribed sequence with strong similarity more 80.56(n)    48062282 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.293152 Transcribed sequence with moderate similarity to protein more 79.33(n)    57051618 
    fruit fly
    (Drosophila melanogaster)
    Insecta spt41 , 3 non-covalent chromatin modification
    chromatin more3
    CG12372-PA1
    62(a)3
    63.1(n)1
    62.5(a)1
      49B103
    363871  NM_136958.41  NP_610802.11 
    worm
    (Caenorhabditis elegans)
    Secernentea spt-41 , 3 Protein SPT-41 58(a)3
    57.46(n)1
    58.1(a)1
      III(68628-69765)3
    1751721  NM_064734.31  NP_497135.11 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons SPT426
    AT5G085656
    transcription elongation factor SPT4-1
    35(a)
    28(a)
    many → 1
    many → 1
    5(25487927-25489428)
    5(2775897-2777446)
    rice
    (Oryza sativa)
    Liliopsida --
    transcription elongation factor SPT4 homolog 1, pu...
    29(a)
    1 ↔ 1
    7(25796885-25799784)


    ENSEMBL Gene Tree for SUPT4H1 (if available)
    TreeFam Gene Tree for SUPT4H1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SUPT4H1 gene

    SUPT4H1 for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for SUPT4H1
    PGOHUM00000239323 PGOHUM00000240102


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/166 NCBI SNPs in SUPT4H1 are shown (see all 166    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1903513771,2
    --56422182(+) CCATTA/CCCTCA 10 -- int10--------
    rs1822308361,2
    --56422350(+) ACACTC/TTCCAG 10 -- int10--------
    rs1871964931,2
    --56422495(+) TTTGGC/GTGATT 10 -- int10--------
    rs99013771,2
    C,F,--56422501(+) TGATTG/TTGCAC 10 -- int11Minor allele frequency- T:0.06WA 118
    rs1499017871,2
    --56422546(+) GAGCAA/GAAGTA 10 -- int1 ut310--------
    rs713658781,2
    C,--56422604(+) CAATCACA/-ACAAT 10 -- ut31 int11Minor allele frequency- -:0.50NA 2
    rs149891,2
    C--56422625(-) CCTGCC/TTGTTT 10 -- int1 ut312Minor allele frequency- T:0.00MN NA 186
    rs1903961251,2
    --56422695(+) ACGAAC/TAGGAT 10 -- ut31 int10--------
    rs1174325221,2
    C,F,--56422765(+) TTGGCC/TGAAAA 10 -- int1 ut311Minor allele frequency- T:0.03NA 120
    rs1449100391,2
    --56422864(+) ATGGTC/GGCCCA 10 -- int1 ut310--------

    HapMap Linkage Disequilibrium report for SUPT4H1 (56422539 - 56430454 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 3 variations for SUPT4H1
         3 CNVs: 4410 58809 49893

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    SUPT4H1 for disorders           About GeneDecksing

    OMIM gene information: 603555    OMIM disorders: --

    3 diseases for SUPT4H1:    About MalaCards
    wolf-hirschhorn syndrome    cockayne syndrome    malaria

    2 diseases from the University of Copenhagen DISEASES database for SUPT4H1:
    Cockayne syndrome     Wolf-Hirschhorn syndrome

    Export disorders for SUPT4H1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SUPT4H1 gene, integrated from 9 sources (see all 44):
    (articles sorted by number of sources associating them with SUPT4H1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Isolation and characterization of the human and mouse homologues (SUPT4H and Supt4h) of the yeast SPT4 gene. (PubMed id 8786137)1, 2, 3 Chiang P.-W.... Kurnit D.M. (1996)
    2. Identification and analysis of a functional human homolog of the SPT4 gene of Saccharomyces cerevisiae. (PubMed id 8649394)1, 2, 9 Hartzog G.A....Winston F. (1996)
    3. DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. (PubMed id 9450929)1, 2, 9 Wada T....Handa H. (1998)
    4. A negative elongation factor for human RNA polymerase II inhibits the anti-arrest transcript-cleavage factor TFIIS. (PubMed id 16214896)1, 2 Palangat M.... Landick R. (2005)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    6. Human Spt6 stimulates transcription elongation by RNA polymerase II in vitro. (PubMed id 15060154)1, 2 Endoh M.... Handa H. (2004)
    7. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    8. Locus-specific requirements for Spt5 in transcriptional activation and repression in Drosophila. (PubMed id 15380072)1, 2 Jennings B.H.... Ish-Horowicz D. (2004)
    9. Functional interactions of RNA-capping enzyme with factors that positively and negatively regulate promoter escape by RNA polymerase II. (PubMed id 15136722)1, 2 Mandal S.S.... Reinberg D. (2004)
    10. Structure-function analysis of human Spt4: evidence that hSpt4 and hSpt5 exert their roles in transcriptional elongation as parts of the DSIF complex. (PubMed id 12653964)1, 2 Kim D.-K.... Handa H. (2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 6827 HGNC: 11467 AceView: SUPT4H1andFLJ20315 Ensembl:ENSG00000213246 euGenes: HUgn6827
    ECgene: SUPT4H1 H-InvDB: SUPT4H1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SUPT4H1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for SUPT4H1 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SUPT4H1 gene:
    Search GeneIP for patents involving SUPT4H1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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