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Aliases for SUPT20HL1 Gene

Aliases for SUPT20HL1 Gene

  • Suppressor Of Ty 20 Homolog (S. Cerevisiae)-Like 1 2 3
  • Family With Sequence Similarity 48, Member B1 2 3
  • FAM48B1 3 4
  • Similar To Transcription Factor (P38 Interacting Protein) 2
  • Transcription Factor SPT20 Homolog-Like 1 3
  • Protein FAM48B1 3

External Ids for SUPT20HL1 Gene

Previous HGNC Symbols for SUPT20HL1 Gene

  • FAM48B1

Previous GeneCards Identifiers for SUPT20HL1 Gene

  • GC0XP024380

Summaries for SUPT20HL1 Gene

GeneCards Summary for SUPT20HL1 Gene

SUPT20HL1 (Suppressor Of Ty 20 Homolog (S. Cerevisiae)-Like 1) is a Protein Coding gene. GO annotations related to this gene include transcription cofactor activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUPT20HL1 Gene

Genomics for SUPT20HL1 Gene

Genomic Location for SUPT20HL1 Gene

Start:
24,362,761 bp from pter
End:
24,365,424 bp from pter
Size:
2,664 bases
Orientation:
Plus strand

Genomic View for SUPT20HL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SUPT20HL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUPT20HL1 Gene

No data available for Regulatory Elements for SUPT20HL1 Gene

Proteins for SUPT20HL1 Gene

  • Protein details for SUPT20HL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3ZLR7-SP201_HUMAN
    Recommended name:
    Transcription factor SPT20 homolog-like 1
    Protein Accession:
    Q3ZLR7
    Secondary Accessions:

    Protein attributes for SUPT20HL1 Gene

    Size:
    823 amino acids
    Molecular mass:
    89431 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SUPT20HL1 Gene

Proteomics data for SUPT20HL1 Gene at MOPED

Post-translational modifications for SUPT20HL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SUPT20HL1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for SUPT20HL1 Gene

Domains for SUPT20HL1 Gene

Protein Domains for SUPT20HL1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q3ZLR7

UniProtKB/Swiss-Prot:

SP201_HUMAN :
  • Q3ZLR7
Family:
  • Belongs to the SPT20 family.
genes like me logo Genes that share domains with SUPT20HL1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SUPT20HL1 Gene

Function for SUPT20HL1 Gene

Gene Ontology (GO) - Molecular Function for SUPT20HL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003712 transcription cofactor activity IEA --
genes like me logo Genes that share ontologies with SUPT20HL1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SUPT20HL1 Gene

Localization for SUPT20HL1 Gene

Gene Ontology (GO) - Cellular Components for SUPT20HL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000124 SAGA complex IEA --
genes like me logo Genes that share ontologies with SUPT20HL1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for SUPT20HL1 Gene

Pathways for SUPT20HL1 Gene

SuperPathways for SUPT20HL1 Gene

No Data Available

Interacting Proteins for SUPT20HL1 Gene

Gene Ontology (GO) - Biological Process for SUPT20HL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903506 regulation of nucleic acid-templated transcription IEA --
genes like me logo Genes that share ontologies with SUPT20HL1: view

No data available for Pathways by source for SUPT20HL1 Gene

Transcripts for SUPT20HL1 Gene

mRNA/cDNA for SUPT20HL1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SUPT20HL1
    • Block miRNA regulation of SUPT20HL1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SUPT20HL1

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SUPT20HL1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for SUPT20HL1 Gene

    No ASD Table

    Relevant External Links for SUPT20HL1 Gene

    GeneLoc Exon Structure for
    SUPT20HL1
    ECgene alternative splicing isoforms for
    SUPT20HL1

    Expression for SUPT20HL1 Gene

    mRNA expression in normal human tissues for SUPT20HL1 Gene

    mRNA differential expression in normal tissues according to GTEx for SUPT20HL1 Gene

    This gene is overexpressed in Fallopian Tube (5.5), Cervix - Ectocervix (5.3), and Uterus (4.0).

    Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SUPT20HL1 Gene

    SOURCE GeneReport for Unigene cluster for SUPT20HL1 Gene Hs.717243

    genes like me logo Genes that share expressions with SUPT20HL1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SUPT20HL1 Gene

    Orthologs for SUPT20HL1 Gene

    This gene was present in the common ancestor of human and mouse.

    Orthologs for SUPT20HL1 Gene

    Organism Taxonomy Gene Similarity Type Details
    mouse
    (Mus musculus)
    Mammalia Supt20-ps 16
    Species with no ortholog for SUPT20HL1:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • chimpanzee (Pan troglodytes)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for SUPT20HL1 Gene

    ENSEMBL:
    Gene Tree for SUPT20HL1 (if available)
    TreeFam:
    Gene Tree for SUPT20HL1 (if available)

    Paralogs for SUPT20HL1 Gene

    Selected SIMAP similar genes for SUPT20HL1 Gene using alignment to 1 proteins:

    genes like me logo Genes that share paralogs with SUPT20HL1: view

    No data available for Paralogs for SUPT20HL1 Gene

    Variants for SUPT20HL1 Gene

    Sequence variations from dbSNP and Humsavar for SUPT20HL1 Gene

    SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
    rs1207577 -- 24,363,270(-) TGCAT(C/G)GTTGG synonymous-codon, reference
    rs1207578 -- 24,363,299(+) GAAGA(C/T)GATGA missense, reference
    rs1207579 -- 24,363,316(+) ATGGC(C/G)AGAAA reference, missense
    rs1207580 -- 24,363,610(+) ACATT(A/G)CTAAA missense, reference
    rs1207581 -- 24,363,618(-) CTTCC(C/T)GCTTT reference, synonymous-codon

    Relevant External Links for SUPT20HL1 Gene

    HapMap Linkage Disequilibrium report
    SUPT20HL1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SUPT20HL1 Gene

    Disorders for SUPT20HL1 Gene

    No disorders were found for SUPT20HL1 Gene.

    No data available for UniProtKB/Swiss-Prot for SUPT20HL1 Gene

    Publications for SUPT20HL1 Gene

    1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
    2. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3

    Products for SUPT20HL1 Gene

    Sources for SUPT20HL1 Gene

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