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Aliases for SUPT20HL1 Gene

Aliases for SUPT20HL1 Gene

  • Suppressor Of Ty 20 Homolog (S. Cerevisiae)-Like 1 2 3
  • Family With Sequence Similarity 48, Member B1 2 3
  • FAM48B1 3 4
  • Similar To Transcription Factor (P38 Interacting Protein) 2
  • Transcription Factor SPT20 Homolog-Like 1 3
  • Protein FAM48B1 3

External Ids for SUPT20HL1 Gene

Previous HGNC Symbols for SUPT20HL1 Gene

  • FAM48B1

Previous GeneCards Identifiers for SUPT20HL1 Gene

  • GC0XP024380

Summaries for SUPT20HL1 Gene

GeneCards Summary for SUPT20HL1 Gene

SUPT20HL1 (Suppressor Of Ty 20 Homolog (S. Cerevisiae)-Like 1) is a Protein Coding gene. GO annotations related to this gene include transcription cofactor activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUPT20HL1 Gene

Genomics for SUPT20HL1 Gene

Genomic Location for SUPT20HL1 Gene

Start:
24,362,761 bp from pter
End:
24,365,424 bp from pter
Size:
2,664 bases
Orientation:
Plus strand

Genomic View for SUPT20HL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SUPT20HL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUPT20HL1 Gene

No data available for Regulatory Elements for SUPT20HL1 Gene

Proteins for SUPT20HL1 Gene

  • Protein details for SUPT20HL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3ZLR7-SP201_HUMAN
    Recommended name:
    Transcription factor SPT20 homolog-like 1
    Protein Accession:
    Q3ZLR7
    Secondary Accessions:

    Protein attributes for SUPT20HL1 Gene

    Size:
    823 amino acids
    Molecular mass:
    89431 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SUPT20HL1 Gene

Proteomics data for SUPT20HL1 Gene at MOPED

Post-translational modifications for SUPT20HL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SUPT20HL1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for SUPT20HL1 Gene

Domains for SUPT20HL1 Gene

Protein Domains for SUPT20HL1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q3ZLR7

UniProtKB/Swiss-Prot:

SP201_HUMAN :
  • Belongs to the SPT20 family.
Family:
  • Belongs to the SPT20 family.
genes like me logo Genes that share domains with SUPT20HL1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SUPT20HL1 Gene

Function for SUPT20HL1 Gene

Gene Ontology (GO) - Molecular Function for SUPT20HL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003712 transcription cofactor activity IEA --
genes like me logo Genes that share ontologies with SUPT20HL1: view

Animal Model Products

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SUPT20HL1
    • Block miRNA regulation of SUPT20HL1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SUPT20HL1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SUPT20HL1 Gene

    Localization for SUPT20HL1 Gene

    Gene Ontology (GO) - Cellular Components for SUPT20HL1 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:0000124 SAGA complex IEA --
    genes like me logo Genes that share ontologies with SUPT20HL1: view

    No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for SUPT20HL1 Gene

    Pathways for SUPT20HL1 Gene

    SuperPathways for SUPT20HL1 Gene

    No Data Available

    Interacting Proteins for SUPT20HL1 Gene

    Gene Ontology (GO) - Biological Process for SUPT20HL1 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:1903506 regulation of nucleic acid-templated transcription IEA --
    genes like me logo Genes that share ontologies with SUPT20HL1: view

    No data available for Pathways by source for SUPT20HL1 Gene

    Transcripts for SUPT20HL1 Gene

    mRNA/cDNA for SUPT20HL1 Gene

    (1) REFSEQ mRNAs :
    (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate SUPT20HL1
      • Block miRNA regulation of SUPT20HL1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for SUPT20HL1

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for SUPT20HL1 Gene

      No ASD Table

      Relevant External Links for SUPT20HL1 Gene

      GeneLoc Exon Structure for
      SUPT20HL1
      ECgene alternative splicing isoforms for
      SUPT20HL1

      Expression for SUPT20HL1 Gene

      mRNA expression in normal human tissues for SUPT20HL1 Gene

      mRNA differential expression in normal tissues according to GTEx for SUPT20HL1 Gene

      This gene is overexpressed in Fallopian Tube (5.5), Cervix - Ectocervix (5.3), and Uterus (4.0).

      Protein differential expression in normal tissues for SUPT20HL1 Gene

      This gene is overexpressed in Cervix (69.0).

      Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SUPT20HL1 Gene

      SOURCE GeneReport for Unigene cluster for SUPT20HL1 Gene Hs.717243

      genes like me logo Genes that share expressions with SUPT20HL1: view

      Expression partners for SUPT20HL1 Gene

      * - Elite partner

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SUPT20HL1 Gene

      Orthologs for SUPT20HL1 Gene

      This gene was present in the common ancestor of human and mouse.

      Orthologs for SUPT20HL1 Gene

      Organism Taxonomy Gene Similarity Type Details
      mouse
      (Mus musculus)
      Mammalia Supt20-ps 16
      Species with no ortholog for SUPT20HL1:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • chimpanzee (Pan troglodytes)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • cow (Bos Taurus)
      • dog (Canis familiaris)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rat (Rattus norvegicus)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for SUPT20HL1 Gene

      ENSEMBL:
      Gene Tree for SUPT20HL1 (if available)
      TreeFam:
      Gene Tree for SUPT20HL1 (if available)

      Paralogs for SUPT20HL1 Gene

      (3) SIMAP similar genes for SUPT20HL1 Gene using alignment to 1 proteins:

      genes like me logo Genes that share paralogs with SUPT20HL1: view

      No data available for Paralogs for SUPT20HL1 Gene

      Variants for SUPT20HL1 Gene

      Sequence variations from dbSNP and Humsavar for SUPT20HL1 Gene

      SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
      rs1207577 -- 24,363,270(-) TGCAT(C/G)GTTGG synonymous-codon, reference
      rs1207578 -- 24,363,299(+) GAAGA(C/T)GATGA missense, reference
      rs1207579 -- 24,363,316(+) ATGGC(C/G)AGAAA reference, missense
      rs1207580 -- 24,363,610(+) ACATT(A/G)CTAAA missense, reference
      rs1207581 -- 24,363,618(-) CTTCC(C/T)GCTTT reference, synonymous-codon

      Relevant External Links for SUPT20HL1 Gene

      HapMap Linkage Disequilibrium report
      SUPT20HL1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SUPT20HL1 Gene

      Disorders for SUPT20HL1 Gene

      No disorders were found for SUPT20HL1 Gene.

      No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SUPT20HL1 Gene

      Publications for SUPT20HL1 Gene

      1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
      2. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3

      Products for SUPT20HL1 Gene

      Sources for SUPT20HL1 Gene

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