Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SUPT20HL1 Gene

Aliases for SUPT20HL1 Gene

  • SPT20 Homolog, SAGA Complex Component-Like 1 2 3 5
  • Suppressor Of Ty 20 Homolog (S. Cerevisiae)-Like 1 2 3
  • Family With Sequence Similarity 48, Member B1 2 3
  • FAM48B1 3 4
  • Similar To Transcription Factor (P38 Interacting Protein) 2
  • Protein FAM48B1 3
  • SPT20L 3

External Ids for SUPT20HL1 Gene

Previous HGNC Symbols for SUPT20HL1 Gene

  • FAM48B1

Previous GeneCards Identifiers for SUPT20HL1 Gene

  • GC0XP024380

Summaries for SUPT20HL1 Gene

GeneCards Summary for SUPT20HL1 Gene

SUPT20HL1 (SPT20 Homolog, SAGA Complex Component-Like 1) is a Protein Coding gene. GO annotations related to this gene include transcription cofactor activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUPT20HL1 Gene

Genomics for SUPT20HL1 Gene

Regulatory Elements for SUPT20HL1 Gene

Enhancers for SUPT20HL1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SUPT20HL1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SUPT20HL1 Gene

Chromosome:
X
Start:
24,362,761 bp from pter
End:
24,365,424 bp from pter
Size:
2,664 bases
Orientation:
Plus strand

Genomic View for SUPT20HL1 Gene

Genes around SUPT20HL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SUPT20HL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUPT20HL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUPT20HL1 Gene

Proteins for SUPT20HL1 Gene

  • Protein details for SUPT20HL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3ZLR7-SP201_HUMAN
    Recommended name:
    Transcription factor SPT20 homolog-like 1
    Protein Accession:
    Q3ZLR7

    Protein attributes for SUPT20HL1 Gene

    Size:
    823 amino acids
    Molecular mass:
    89431 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SUPT20HL1 Gene

Proteomics data for SUPT20HL1 Gene at MOPED

Post-translational modifications for SUPT20HL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SUPT20HL1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for SUPT20HL1 Gene

Domains & Families for SUPT20HL1 Gene

Protein Domains for SUPT20HL1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SUPT20HL1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q3ZLR7

UniProtKB/Swiss-Prot:

SP201_HUMAN :
  • Belongs to the SPT20 family.
Family:
  • Belongs to the SPT20 family.
genes like me logo Genes that share domains with SUPT20HL1: view

No data available for Gene Families for SUPT20HL1 Gene

Function for SUPT20HL1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SUPT20HL1 Gene

Localization for SUPT20HL1 Gene

Gene Ontology (GO) - Cellular Components for SUPT20HL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000124 SAGA complex IEA --
genes like me logo Genes that share ontologies with SUPT20HL1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for SUPT20HL1 Gene

Pathways & Interactions for SUPT20HL1 Gene

SuperPathways for SUPT20HL1 Gene

No Data Available

Interacting Proteins for SUPT20HL1 Gene

Gene Ontology (GO) - Biological Process for SUPT20HL1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SUPT20HL1 Gene

Drugs & Compounds for SUPT20HL1 Gene

No Compound Related Data Available

Transcripts for SUPT20HL1 Gene

mRNA/cDNA for SUPT20HL1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SUPT20HL1 Gene

No ASD Table

Relevant External Links for SUPT20HL1 Gene

GeneLoc Exon Structure for
SUPT20HL1
ECgene alternative splicing isoforms for
SUPT20HL1

Expression for SUPT20HL1 Gene

mRNA expression in normal human tissues for SUPT20HL1 Gene

mRNA differential expression in normal tissues according to GTEx for SUPT20HL1 Gene

This gene is overexpressed in Fallopian Tube (x5.5), Cervix - Ectocervix (x5.3), and Uterus (x4.0).

Protein differential expression in normal tissues from HIPED for SUPT20HL1 Gene

This gene is overexpressed in Cervix (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SUPT20HL1 Gene



SOURCE GeneReport for Unigene cluster for SUPT20HL1 Gene Hs.717243

genes like me logo Genes that share expression patterns with SUPT20HL1: view

Protein tissue co-expression partners for SUPT20HL1 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SUPT20HL1 Gene

Orthologs for SUPT20HL1 Gene

Evolution for SUPT20HL1 Gene

ENSEMBL:
Gene Tree for SUPT20HL1 (if available)
TreeFam:
Gene Tree for SUPT20HL1 (if available)

No data available for Orthologs for SUPT20HL1 Gene

Paralogs for SUPT20HL1 Gene

(3) SIMAP similar genes for SUPT20HL1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SUPT20HL1: view

No data available for Paralogs for SUPT20HL1 Gene

Variants for SUPT20HL1 Gene

Sequence variations from dbSNP and Humsavar for SUPT20HL1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs747773037 -- 24,364,634(+) GGGGA(G/T)CAGTT reference, missense
rs747816667 -- 24,363,949(+) CTGGG(C/T)CAGAG reference, missense
rs748094154 -- 24,364,763(+) TTCTC(C/T)AGCAC reference, missense
rs748143929 -- 24,363,261(+) CTTCT(A/G)CGTCC reference, synonymous-codon
rs748218885 -- 24,365,012(+) CACTA(C/G)AGCCA reference, missense

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for SUPT20HL1 Gene

Disorders for SUPT20HL1 Gene

Relevant External Links for SUPT20HL1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SUPT20HL1

No disorders were found for SUPT20HL1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SUPT20HL1 Gene

Publications for SUPT20HL1 Gene

  1. The human SPT20-containing SAGA complex plays a direct role in the regulation of endoplasmic reticulum stress-induced genes. (PMID: 19114550) Nagy Z. … Tora L. (Mol. Cell. Biol. 2009) 2 3 67
  2. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3

Products for SUPT20HL1 Gene

Sources for SUPT20HL1 Gene

Content