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Aliases for SUMO1P1 Gene

Aliases for SUMO1P1 Gene

  • SUMO1 Pseudogene 1 2 3 5
  • Ubiquitin-Like 2 2 3
  • Ubiquitin-Like 6 2 3
  • PIC1L 3
  • UBL2 3
  • UBL6 3

External Ids for SUMO1P1 Gene

Previous HGNC Symbols for SUMO1P1 Gene

  • UBL2
  • UBL6

Previous GeneCards Identifiers for SUMO1P1 Gene

  • GC20M051924
  • GC20M052492
  • GC20M049237

Summaries for SUMO1P1 Gene

GeneCards Summary for SUMO1P1 Gene

SUMO1P1 (SUMO1 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUMO1P1 Gene

Genomics for SUMO1P1 Gene

Regulatory Elements for SUMO1P1 Gene

Enhancers for SUMO1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F053890 1.1 Ensembl ENCODE 5.7 -16.9 -16892 4.4 HDGF PKNOX1 WRNIP1 GATA2 CBX5 FOS JUNB TBX21 MEF2D GLIS1 RNU7-14P ENSG00000236352 SUMO1P1 GC20P053902
GH20F053878 1 Ensembl ENCODE 0.8 -3.9 -3892 1.6 ELF3 TFAP4 SAP130 NFXL1 FEZF1 ZIC2 RAD21 RARA ZKSCAN1 YY1 ENSG00000236352 RNU7-14P SUMO1P1 GC20P053902
GH20F053869 1.4 FANTOM5 Ensembl ENCODE 0.8 +3.9 3943 4.9 PKNOX1 ATF1 WRNIP1 ZFP64 ARID4B YBX1 DMAP1 ZNF48 YY1 CBX5 RNU7-14P SUMO1P1 ENSG00000225563
GH20F053875 0.2 ENCODE 0.8 +0.0 13 0.2 CTCF CBX3 MAX CEBPG ZBTB40 CHAMP1 IRF9 ZNF316 TRIM24 CREM RNU7-14P SUMO1P1 ENSG00000225563
GH20F053883 0.9 Ensembl ENCODE 0.4 -7.7 -7689 0.5 OSR2 GLIS1 BHLHE40 FOS ETV6 SP7 TCF7L2 ENSG00000236352 RNU7-14P SUMO1P1 GC20P053902
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SUMO1P1 on UCSC Golden Path with GeneCards custom track

Promoters for SUMO1P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001838560 209 601 CTCF ZNF146 CBX3 MAX CEBPG ZBTB40 CHAMP1 IRF9 ZNF316 TRIM24

Genomic Location for SUMO1P1 Gene

Chromosome:
20
Start:
53,874,498 bp from pter
End:
53,875,709 bp from pter
Size:
1,212 bases
Orientation:
Minus strand

Genomic View for SUMO1P1 Gene

Genes around SUMO1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SUMO1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUMO1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUMO1P1 Gene

Proteins for SUMO1P1 Gene

Post-translational modifications for SUMO1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SUMO1P1 Gene

Domains & Families for SUMO1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SUMO1P1 Gene

Function for SUMO1P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SUMO1P1 Gene

Localization for SUMO1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SUMO1P1 Gene

Pathways & Interactions for SUMO1P1 Gene

SuperPathways for SUMO1P1 Gene

No Data Available

Interacting Proteins for SUMO1P1 Gene

Gene Ontology (GO) - Biological Process for SUMO1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SUMO1P1 Gene

Transcripts for SUMO1P1 Gene

mRNA/cDNA for SUMO1P1 Gene

(3) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SUMO1P1 Gene

SUMO1 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SUMO1P1 Gene

No ASD Table

Relevant External Links for SUMO1P1 Gene

GeneLoc Exon Structure for
SUMO1P1
ECgene alternative splicing isoforms for
SUMO1P1

Expression for SUMO1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SUMO1P1 Gene

mRNA differential expression in normal tissues according to GTEx for SUMO1P1 Gene

This gene is overexpressed in Testis (x28.7) and Whole Blood (x15.3).

NURSA nuclear receptor signaling pathways regulating expression of SUMO1P1 Gene:

SUMO1P1

SOURCE GeneReport for Unigene cluster for SUMO1P1 Gene:

Hs.449977
genes like me logo Genes that share expression patterns with SUMO1P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SUMO1P1 Gene

Orthologs for SUMO1P1 Gene

Evolution for SUMO1P1 Gene

ENSEMBL:
Gene Tree for SUMO1P1 (if available)
TreeFam:
Gene Tree for SUMO1P1 (if available)

No data available for Orthologs for SUMO1P1 Gene

Paralogs for SUMO1P1 Gene

No data available for Paralogs for SUMO1P1 Gene

Variants for SUMO1P1 Gene

Sequence variations from dbSNP and Humsavar for SUMO1P1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111499408 -- 53,875,893(+) GCCAG(A/C)CATCT upstream-variant-2KB
rs111518914 -- 53,874,238(+) ACAGG(C/T)GTGAG downstream-variant-500B
rs112072486 -- 53,876,522(+) TTCTG(C/T)AAAAC upstream-variant-2KB
rs112466842 -- 53,877,061(+) GCGCA(C/T)GGCAA upstream-variant-2KB
rs112949326 -- 53,874,926(+) AAAAT(A/C)AGGGC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SUMO1P1 Gene

Variant ID Type Subtype PubMed ID
dgv66n68 CNV loss 17160897
esv34060 CNV loss 18971310
nsv1060372 CNV loss 25217958
nsv586222 CNV loss 21841781
nsv586224 CNV gain 21841781

Relevant External Links for SUMO1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SUMO1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SUMO1P1 Gene

Disorders for SUMO1P1 Gene

Relevant External Links for SUMO1P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SUMO1P1

No disorders were found for SUMO1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SUMO1P1 Gene

Publications for SUMO1P1 Gene

  1. Molecular features of human ubiquitin-like SUMO genes and their encoded proteins. (PMID: 12383504) Su H.-L. … Li S.S.-L. (Gene 2002) 2 3 64
  2. The ubiquitin-homology gene PIC1: characterization of mouse (Pic1) and human (UBL1) genes and pseudogenes. (PMID: 9465300) Howe K. … Solomon E. (Genomics 1998) 2 3 64
  3. Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. (PMID: 24722188) Corominas R. … Iakoucheva L.M. (Nat. Commun. 2014) 3 64
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  5. Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome. (PMID: 22885925) Shi Y. … Chen Z.J. (Nat. Genet. 2012) 3 64

Products for SUMO1P1 Gene

Sources for SUMO1P1 Gene

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