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Aliases for SUGT1P3 Gene

Aliases for SUGT1P3 Gene

  • SGT1 Homolog, MIS12 Kinetochore Complex Assembly Cochaperone Pseudogene 3 2 3 5
  • SUGT1 Pseudogene 3 2 3
  • SGT1, Suppressor Of G2 Allele Of SKP1 Like 1 (S. Cerevisiae) 2
  • Suppressor Of G2 Allele Of SKP1 (S. Cerevisiae) Pseudogene 3 2
  • SGT1, Suppressor Of G2 Allele Of SKP1 Like 1 3
  • Suppressor Of G2 Allele Of SKP1 Pseudogene 3 3
  • SUGT1L1 3

External Ids for SUGT1P3 Gene

Previous HGNC Symbols for SUGT1P3 Gene

  • SUGT1L1

Previous GeneCards Identifiers for SUGT1P3 Gene

  • GC13M022171
  • GC13M041372
  • GC13M041483

Summaries for SUGT1P3 Gene

GeneCards Summary for SUGT1P3 Gene

SUGT1P3 (SGT1 Homolog, MIS12 Kinetochore Complex Assembly Cochaperone Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUGT1P3 Gene

Genomics for SUGT1P3 Gene

Regulatory Elements for SUGT1P3 Gene

Enhancers for SUGT1P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F040894 0.7 ENCODE 13.3 +25.9 25925 2.8 SOX13 ELF3 TBP DRAP1 TFAP4 SAP130 CEBPG RARA TEAD3 FOXK2 SUGT1P3 TPTE2P5 MRPS31 GC13P040904 PIR47174
GH13F040539 0.9 Ensembl ENCODE 12.3 +381.2 381240 2.3 ATF1 ARID4B ZNF548 FOS SP5 PPARG KAT8 MIER3 GLIS1 ETV4 SUGT1P3 MTRF1 GC13P040543 GC13P040539
GH13F040232 0.8 FANTOM5 Ensembl ENCODE 12.3 +687.1 687139 4.8 BCOR ZMYM3 CEBPB CEBPG NR3C1 NR2F2 POLR2A SMARCA4 CEBPA KDM1A SUGT1P3 FOXO1 RNY3P9 GC13P040257
GH13F041001 0.5 Ensembl ENCODE 5.6 -84.2 -84227 10.0 PKNOX1 ATF1 MLX ARID4B DMAP1 YY1 SLC30A9 CBX5 FOS JUNB WBP4 ELF1 CYCSP34 SLC25A15 SUGT1P3 RGS17P1 GC13M041023
GH13F040976 1.3 FANTOM5 ENCODE 4.8 -60.2 -60196 10.7 PKNOX1 ATF1 FEZF1 YY1 JUNB REST TBX21 SMARCA4 PBX2 KDM1A ELF1 WBP4 CYCSP34 SUGT1P3 RGCC NAA16 FOXO1 RGS17P1 PIR56183
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SUGT1P3 on UCSC Golden Path with GeneCards custom track

Promoters for SUGT1P3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000514897 74 2201 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 YY1 GLIS2 ZNF143

Genomic Location for SUGT1P3 Gene

Chromosome:
13
Start:
40,882,577 bp from pter
End:
40,921,774 bp from pter
Size:
39,198 bases
Orientation:
Minus strand

Genomic View for SUGT1P3 Gene

Genes around SUGT1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SUGT1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUGT1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUGT1P3 Gene

Proteins for SUGT1P3 Gene

Post-translational modifications for SUGT1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SUGT1P3 Gene

Domains & Families for SUGT1P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SUGT1P3 Gene

Function for SUGT1P3 Gene

Phenotypes for SUGT1P3 Gene

GenomeRNAi human phenotypes for SUGT1P3:
genes like me logo Genes that share phenotypes with SUGT1P3: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SUGT1P3 Gene

Localization for SUGT1P3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SUGT1P3 Gene COMPARTMENTS Subcellular localization image for SUGT1P3 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SUGT1P3 Gene

Pathways & Interactions for SUGT1P3 Gene

SuperPathways for SUGT1P3 Gene

No Data Available

Interacting Proteins for SUGT1P3 Gene

Gene Ontology (GO) - Biological Process for SUGT1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SUGT1P3 Gene

Transcripts for SUGT1P3 Gene

mRNA/cDNA for SUGT1P3 Gene

(1) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SUGT1P3 Gene

Suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SUGT1P3 Gene

No ASD Table

Relevant External Links for SUGT1P3 Gene

GeneLoc Exon Structure for
SUGT1P3
ECgene alternative splicing isoforms for
SUGT1P3

Expression for SUGT1P3 Gene

mRNA expression in normal human tissues for SUGT1P3 Gene

mRNA differential expression in normal tissues according to GTEx for SUGT1P3 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of SUGT1P3 Gene:

SUGT1P3

SOURCE GeneReport for Unigene cluster for SUGT1P3 Gene:

Hs.442781
genes like me logo Genes that share expression patterns with SUGT1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SUGT1P3 Gene

Orthologs for SUGT1P3 Gene

Evolution for SUGT1P3 Gene

ENSEMBL:
Gene Tree for SUGT1P3 (if available)
TreeFam:
Gene Tree for SUGT1P3 (if available)

No data available for Orthologs for SUGT1P3 Gene

Paralogs for SUGT1P3 Gene

No data available for Paralogs for SUGT1P3 Gene

Variants for SUGT1P3 Gene

Sequence variations from dbSNP and Humsavar for SUGT1P3 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10219986 -- 40,916,218(+) aaact(C/T)tgtct intron-variant
rs111345241 -- 40,917,377(+) TACAG(-/TAGT)GTACC intron-variant
rs111433219 -- 40,921,753(+) TCAAC(C/G)GAGCT nc-transcript-variant, upstream-variant-2KB
rs11147827 -- 40,917,718(+) ATTGA(C/T)CTGTT intron-variant
rs111614786 -- 40,913,301(+) ACCCC(A/G)TCTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SUGT1P3 Gene

Variant ID Type Subtype PubMed ID
nsv974083 CNV duplication 23825009

Relevant External Links for SUGT1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SUGT1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SUGT1P3 Gene

Disorders for SUGT1P3 Gene

Relevant External Links for SUGT1P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SUGT1P3

No disorders were found for SUGT1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SUGT1P3 Gene

Publications for SUGT1P3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SUGT1P3 Gene

Sources for SUGT1P3 Gene

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