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Aliases for SUGP1 Gene

Aliases for SUGP1 Gene

  • SURP And G-Patch Domain Containing 1 2 3 5
  • Splicing Factor 4 2 3 4
  • RNA-Binding Protein RBP 3 4
  • SF4 3 4
  • SURP And G-Patch Domain-Containing Protein 1 3
  • F23858 3
  • RBP 3

External Ids for SUGP1 Gene

Previous HGNC Symbols for SUGP1 Gene

  • SF4

Previous GeneCards Identifiers for SUGP1 Gene

  • GC19M019389
  • GC19M018951

Summaries for SUGP1 Gene

Entrez Gene Summary for SUGP1 Gene

  • SF4 is a member of the SURP family of splicing factors.[supplied by OMIM, Sep 2003]

GeneCards Summary for SUGP1 Gene

SUGP1 (SURP And G-Patch Domain Containing 1) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Major Pathway and Gene Expression. GO annotations related to this gene include nucleic acid binding and RNA binding. An important paralog of this gene is SUGP2.

UniProtKB/Swiss-Prot for SUGP1 Gene

  • Plays a role in pre-mRNA splicing.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUGP1 Gene

Genomics for SUGP1 Gene

Regulatory Elements for SUGP1 Gene

Enhancers for SUGP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G019319 1.7 FANTOM5 ENCODE dbSUPER 2.1 +0.0 17 2.4 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A FEZF1 YY1 ZNF766 ZNF207 ZNF14 MAU2 ENSG00000268938 ZNF506 GATAD2A ENSG00000268030 UPF1 ENSG00000267481 ENSG00000269191 KXD1
GH19G019031 1.5 FANTOM5 ENCODE 2 +287.5 287468 3.1 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 SLC30A9 ZNF143 TMEM161A MEF2B BORCS8-MEF2B RFXANK BORCS8 SLC25A42 ARMC6 SUGP2 SUGP1 DDX49
GH19G019323 0.8 ENCODE dbSUPER 0.7 -3.4 -3357 1.0 JUND SCRT2 HNF4A RAD21 YY1 NR2F2 GABPA SUGP1 GC19M019332
GH19G019333 1.1 ENCODE dbSUPER 0.4 -13.7 -13723 1.3 HDAC1 TBL1XR1 CREB3L1 BMI1 ZNF766 CBX5 FOS RELB IKZF2 SMARCA5 HAPLN4 BORCS8-MEF2B BORCS8 RFXANK MEF2B MAU2 YJEFN3 GC19M019332 SUGP1
GH19G019328 0.8 Ensembl ENCODE 0.4 -8.5 -8514 1.1 CTCF ZNF34 FOS ZNF781 SUPT5H GATAD2A HAPLN4 SUGP1 GC19M019332
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SUGP1 on UCSC Golden Path with GeneCards custom track

Promoters for SUGP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000108222 -56 2601 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A FEZF1 YY1 ZNF766 ZNF207

Genomic Location for SUGP1 Gene

Chromosome:
19
Start:
19,276,018 bp from pter
End:
19,320,844 bp from pter
Size:
44,827 bases
Orientation:
Minus strand

Genomic View for SUGP1 Gene

Genes around SUGP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SUGP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUGP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUGP1 Gene

Proteins for SUGP1 Gene

  • Protein details for SUGP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IWZ8-SUGP1_HUMAN
    Recommended name:
    SURP and G-patch domain-containing protein 1
    Protein Accession:
    Q8IWZ8
    Secondary Accessions:
    • O60378
    • Q6P3X9
    • Q8TCQ4
    • Q8WWT4
    • Q8WWT5
    • Q9NTG3

    Protein attributes for SUGP1 Gene

    Size:
    645 amino acids
    Molecular mass:
    72471 Da
    Quaternary structure:
    • Component of the spliceosome.
    SequenceCaution:
    • Sequence=AAC08052.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=AAL68960.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAL68961.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for SUGP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SUGP1 Gene

Post-translational modifications for SUGP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SUGP1 Gene

Domains & Families for SUGP1 Gene

Gene Families for SUGP1 Gene

Protein Domains for SUGP1 Gene

InterPro:
Blocks:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SUGP1: view

No data available for UniProtKB/Swiss-Prot for SUGP1 Gene

Function for SUGP1 Gene

Molecular function for SUGP1 Gene

UniProtKB/Swiss-Prot Function:
Plays a role in pre-mRNA splicing.

Gene Ontology (GO) - Molecular Function for SUGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003723 RNA binding IDA,IEA 22681889
GO:0005515 protein binding IPI 21988832
genes like me logo Genes that share ontologies with SUGP1: view
genes like me logo Genes that share phenotypes with SUGP1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SUGP1 Gene

Localization for SUGP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SUGP1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SUGP1 gene
Compartment Confidence
nucleus 5
cytosol 2
extracellular 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for SUGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm TAS --
GO:0005681 spliceosomal complex IEA --
genes like me logo Genes that share ontologies with SUGP1: view

Pathways & Interactions for SUGP1 Gene

genes like me logo Genes that share pathways with SUGP1: view

Pathways by source for SUGP1 Gene

Gene Ontology (GO) - Biological Process for SUGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000398 mRNA splicing, via spliceosome TAS --
GO:0006396 RNA processing IEA --
GO:0006397 mRNA processing IEA --
GO:0008380 RNA splicing IEA --
genes like me logo Genes that share ontologies with SUGP1: view

No data available for SIGNOR curated interactions for SUGP1 Gene

Drugs & Compounds for SUGP1 Gene

No Compound Related Data Available

Transcripts for SUGP1 Gene

Unigene Clusters for SUGP1 Gene

SURP and G patch domain containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SUGP1 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b · 11c ^ 12 ^ 13 ^ 14 ^ 15
SP1: - -
SP2:
SP3:
SP4: - - - - - - - - - - - -
SP5:
SP6:

Relevant External Links for SUGP1 Gene

GeneLoc Exon Structure for
SUGP1
ECgene alternative splicing isoforms for
SUGP1

Expression for SUGP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SUGP1 Gene

Protein differential expression in normal tissues from HIPED for SUGP1 Gene

This gene is overexpressed in Heart (20.8), CD8 Tcells (8.4), and Lymph node (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SUGP1 Gene



Protein tissue co-expression partners for SUGP1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SUGP1 Gene:

SUGP1

SOURCE GeneReport for Unigene cluster for SUGP1 Gene:

Hs.515274

mRNA Expression by UniProt/SwissProt for SUGP1 Gene:

Q8IWZ8-SUGP1_HUMAN
Tissue specificity: Detected in adult testis and heart, and in adult and fetal brain, kidney and skeletal muscle.

Evidence on tissue expression from TISSUES for SUGP1 Gene

  • Nervous system(4.8)
  • Liver(4.2)
genes like me logo Genes that share expression patterns with SUGP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for SUGP1 Gene

Orthologs for SUGP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for SUGP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SUGP1 34 35
  • 99.53 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia SUGP1 35
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SF4 35
  • 91 (a)
OneToOne
SUGP1 34
  • 90.03 (n)
dog
(Canis familiaris)
Mammalia SUGP1 34 35
  • 89.4 (n)
mouse
(Mus musculus)
Mammalia Sugp1 34 16 35
  • 85.34 (n)
rat
(Rattus norvegicus)
Mammalia Sugp1 34
  • 84.97 (n)
oppossum
(Monodelphis domestica)
Mammalia SUGP1 35
  • 83 (a)
OneToOne
chicken
(Gallus gallus)
Aves SUGP1 34 35
  • 74.95 (n)
lizard
(Anolis carolinensis)
Reptilia SUGP1 35
  • 73 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sugp1 34
  • 66.61 (n)
Str.16120 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.4572 34
zebrafish
(Danio rerio)
Actinopterygii sugp1 34 35
  • 69.16 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG31550 35
  • 17 (a)
OneToMany
Species where no ortholog for SUGP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SUGP1 Gene

ENSEMBL:
Gene Tree for SUGP1 (if available)
TreeFam:
Gene Tree for SUGP1 (if available)

Paralogs for SUGP1 Gene

Paralogs for SUGP1 Gene

(1) SIMAP similar genes for SUGP1 Gene using alignment to 7 proteins:

Pseudogenes.org Pseudogenes for SUGP1 Gene

genes like me logo Genes that share paralogs with SUGP1: view

Variants for SUGP1 Gene

Sequence variations from dbSNP and Humsavar for SUGP1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000082428 -- 19,315,558(+) TCATC(C/T)ACCTG intron-variant
rs1000111035 -- 19,307,292(+) TCAAG(C/T)GATCC intron-variant
rs1000131551 -- 19,278,465(+) TTTCC(C/T)CCGCA intron-variant
rs1000149750 -- 19,296,562(+) GAATG(C/G)TGTGA intron-variant
rs1000325109 -- 19,283,579(+) CCTCC(C/T)GAGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SUGP1 Gene

Variant ID Type Subtype PubMed ID
esv2664832 CNV deletion 23128226
esv3643847 CNV loss 21293372
esv3643848 CNV loss 21293372
nsv1056419 CNV gain 25217958
nsv1151217 CNV deletion 26484159

Variation tolerance for SUGP1 Gene

Residual Variation Intolerance Score: 9.67% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.98; 74.74% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SUGP1 Gene

Human Gene Mutation Database (HGMD)
SUGP1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SUGP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SUGP1 Gene

Disorders for SUGP1 Gene

Relevant External Links for SUGP1

Genetic Association Database (GAD)
SUGP1
Human Genome Epidemiology (HuGE) Navigator
SUGP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SUGP1

No disorders were found for SUGP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SUGP1 Gene

Publications for SUGP1 Gene

  1. SF4 and SFRS14, two related putative splicing factors on human chromosome 19p13.11. (PMID: 12594045) Sampson N.D. … Hewitt J.E. (Gene 2003) 2 3 4 22 64
  2. Biological, clinical and population relevance of 95 loci for blood lipids. (PMID: 20686565) Teslovich T.M. … Kathiresan S. (Nature 2010) 3 46 64
  3. Genetic variants influencing circulating lipid levels and risk of coronary artery disease. (PMID: 20864672) Waterworth D.M. … Sandhu M.S. (Arterioscler. Thromb. Vasc. Biol. 2010) 3 46 64
  4. Common variants at 30 loci contribute to polygenic dyslipidemia. (PMID: 19060906) Kathiresan S. … Cupples L.A. (Nat. Genet. 2009) 3 46 64
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4 64

Products for SUGP1 Gene

Sources for SUGP1 Gene

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