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STXBP5-AS1 Gene(RNA Gene)

STXBP5 Antisense RNA 1

GCID:
GC06M146841
GIFtS:
16
Genes Participants
UDN Logo

Aliases for STXBP5-AS1 Gene

Subcategory (RNA class) for STXBP5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STXBP5-AS1 Gene

  • STXBP5 Antisense RNA 1 2 3 5
  • STXBP5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for STXBP5-AS1 Gene

Previous GeneCards Identifiers for STXBP5-AS1 Gene

  • GC06M147162

Summaries for STXBP5-AS1 Gene

GeneCards Summary for STXBP5-AS1 Gene

STXBP5-AS1 (STXBP5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STXBP5-AS1 Gene

Genomics for STXBP5-AS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for STXBP5-AS1 Gene

Enhancers for STXBP5-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around STXBP5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for STXBP5-AS1 Gene

Chromosome:
6
Start:
146,841,388 bp from pter
End:
147,204,614 bp from pter
Size:
363,227 bases
Orientation:
Minus strand

Genomic View for STXBP5-AS1 Gene

Genes around STXBP5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STXBP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STXBP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for STXBP5-AS1 Gene

Proteins for STXBP5-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for STXBP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STXBP5-AS1 Gene

Domains & Families for STXBP5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STXBP5-AS1 Gene

Function for STXBP5-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for STXBP5-AS1 Gene

GenomeRNAi human phenotypes for STXBP5-AS1:
genes like me logo Genes that share phenotypes with STXBP5-AS1: view

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STXBP5-AS1 Gene

Localization for STXBP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STXBP5-AS1 Gene

Pathways & Interactions for STXBP5-AS1 Gene

SuperPathways for STXBP5-AS1 Gene

PathCards logoMore details on SuperPathways for STXBP5-AS1
No Data Available

Interacting Proteins for STXBP5-AS1 Gene

Gene Ontology (GO) - Biological Process for STXBP5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STXBP5-AS1 Gene

Drugs & Compounds for STXBP5-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for STXBP5-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for STXBP5-AS1 Gene

(5) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STXBP5-AS1 Gene

STXBP5 antisense RNA 1:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for STXBP5-AS1 Gene

No ASD Table

Relevant External Links for STXBP5-AS1 Gene

GeneLoc Exon Structure for
STXBP5-AS1
ECgene alternative splicing isoforms for
STXBP5-AS1

Expression for STXBP5-AS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for STXBP5-AS1 Gene

mRNA expression in normal human tissues for STXBP5-AS1 Gene
mRNA expression by GTEx for STXBP5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for STXBP5-AS1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x4.6) and Brain - Cortex (x4.1).

SOURCE GeneReport for Unigene cluster for STXBP5-AS1 Gene Hs.557608

genes like me logo Genes that share expression patterns with STXBP5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for STXBP5-AS1 Gene

Orthologs for STXBP5-AS1 Gene

Evolution for STXBP5-AS1 Gene

ENSEMBL:
Gene Tree for STXBP5-AS1 (if available)
TreeFam:
Gene Tree for STXBP5-AS1 (if available)

No data available for Orthologs for STXBP5-AS1 Gene

Paralogs for STXBP5-AS1 Gene

No data available for Paralogs for STXBP5-AS1 Gene

Variants for STXBP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for STXBP5-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1022877 -- 146,889,541(+) GCAGC(A/G)TATTA intron-variant
rs1031012 -- 147,169,684(-) agaga(G/T)ccaga intron-variant
rs1031013 -- 147,169,556(-) cacca(A/G)tgaaa intron-variant
rs1105440 -- 147,069,085(+) TACCT(A/C)CACCA intron-variant
rs1105441 -- 147,069,604(-) CCTGA(A/G)CTCTT intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for STXBP5-AS1 Gene

Disorders for STXBP5-AS1 Gene

Relevant External Links for STXBP5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STXBP5-AS1

No disorders were found for STXBP5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STXBP5-AS1 Gene

Publications for STXBP5-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for STXBP5-AS1 Gene

Sources for STXBP5-AS1 Gene

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