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Aliases for STXBP5-AS1 Gene

Subcategory (RNA class) for STXBP5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STXBP5-AS1 Gene

  • STXBP5 Antisense RNA 1 2 3 5
  • STXBP5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for STXBP5-AS1 Gene

Previous GeneCards Identifiers for STXBP5-AS1 Gene

  • GC06M147162

Summaries for STXBP5-AS1 Gene

GeneCards Summary for STXBP5-AS1 Gene

STXBP5-AS1 (STXBP5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STXBP5-AS1 Gene

Genomics for STXBP5-AS1 Gene

Regulatory Elements for STXBP5-AS1 Gene

Enhancers for STXBP5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F146902 0.6 Ensembl ENCODE 27.6 +301.7 301701 1.5 CTCF ARNT TBL1XR1 GTF2E2 ZNF644 RAD21 CHAMP1 GATA2 NCOR1 SMC3 STXBP5-AS1 ENSG00000272397 LOC105378042
GH06F146912 1.3 FANTOM5 ENCODE 20.7 +289.6 289624 5.0 HDGF ARNT CREB3L1 SIN3A FEZF1 FOS SP3 JUNB SMARCB1 MEF2D STXBP5-AS1 ADGB STXBP5 RAB32 ENSG00000272397 LOC105378042
GH06F146905 1.1 Ensembl ENCODE 19.4 +299.0 299014 0.4 JUN RAD21 ZNF316 GATA3 CTBP1 SMC3 RCOR1 TCF7L2 EZH2 RFX1 STXBP5-AS1 ENSG00000272397 LOC105378042
GH06F146891 1 Ensembl ENCODE 19.3 +312.1 312101 3.0 HDGF PKNOX1 ATF1 ELK1 GATA2 FOS JUNB REST SMARCB1 CREB3 STXBP5-AS1 STXBP5 LOC105378042 ENSG00000272397
GH06F147262 0.8 ENCODE 12 -58.5 -58546 1.0 SCRT2 SP7 STXBP5 STXBP5-AS1 GC06M147362
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around STXBP5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for STXBP5-AS1 Gene

Chromosome:
6
Start:
146,841,388 bp from pter
End:
147,204,614 bp from pter
Size:
363,227 bases
Orientation:
Minus strand

Genomic View for STXBP5-AS1 Gene

Genes around STXBP5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STXBP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STXBP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STXBP5-AS1 Gene

Proteins for STXBP5-AS1 Gene

Post-translational modifications for STXBP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STXBP5-AS1 Gene

Domains & Families for STXBP5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STXBP5-AS1 Gene

Function for STXBP5-AS1 Gene

Phenotypes for STXBP5-AS1 Gene

GenomeRNAi human phenotypes for STXBP5-AS1:
genes like me logo Genes that share phenotypes with STXBP5-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STXBP5-AS1 Gene

Localization for STXBP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STXBP5-AS1 Gene

Pathways & Interactions for STXBP5-AS1 Gene

SuperPathways for STXBP5-AS1 Gene

No Data Available

Interacting Proteins for STXBP5-AS1 Gene

Gene Ontology (GO) - Biological Process for STXBP5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STXBP5-AS1 Gene

Transcripts for STXBP5-AS1 Gene

mRNA/cDNA for STXBP5-AS1 Gene

(5) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STXBP5-AS1 Gene

STXBP5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for STXBP5-AS1 Gene

No ASD Table

Relevant External Links for STXBP5-AS1 Gene

GeneLoc Exon Structure for
STXBP5-AS1
ECgene alternative splicing isoforms for
STXBP5-AS1

Expression for STXBP5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for STXBP5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for STXBP5-AS1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x4.6) and Brain - Cortex (x4.1).

SOURCE GeneReport for Unigene cluster for STXBP5-AS1 Gene:

Hs.557608
genes like me logo Genes that share expression patterns with STXBP5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for STXBP5-AS1 Gene

Orthologs for STXBP5-AS1 Gene

Evolution for STXBP5-AS1 Gene

ENSEMBL:
Gene Tree for STXBP5-AS1 (if available)
TreeFam:
Gene Tree for STXBP5-AS1 (if available)

No data available for Orthologs for STXBP5-AS1 Gene

Paralogs for STXBP5-AS1 Gene

No data available for Paralogs for STXBP5-AS1 Gene

Variants for STXBP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for STXBP5-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10223422 -- 146,889,040(+) ATTTT(C/T)ACCAT intron-variant
rs10223489 -- 146,899,826(+) GGggc(C/T)gggtg intron-variant
rs1022877 -- 146,889,541(+) GCAGC(A/G)TATTA intron-variant
rs10237471 -- 146,939,628(+) ccagc(A/G)cctgt intron-variant
rs1031012 -- 147,169,684(-) agaga(G/T)ccaga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STXBP5-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1228e214 CNV loss 21293372
esv2296134 CNV deletion 18987734
esv2422007 CNV deletion 20811451
esv2500763 CNV loss 19546169
esv2609330 CNV deletion 19546169
esv2657211 CNV deletion 23128226
esv2659509 CNV deletion 23128226
esv2732841 CNV deletion 23290073
esv274984 CNV loss 21479260
esv2760996 CNV gain 21179565
esv2761057 CNV loss 21179565
esv29555 CNV loss 19812545
esv3611161 CNV loss 21293372
esv3611162 CNV loss 21293372
esv3611163 CNV loss 21293372
esv3611164 CNV gain 21293372
nsv1112908 CNV deletion 24896259
nsv1161460 CNV duplication 26073780
nsv1161461 CNV deletion 26073780
nsv442012 CNV loss 18776908
nsv442013 CNV loss 18776908
nsv477245 CNV novel sequence insertion 20440878
nsv514395 CNV loss 21397061
nsv522096 CNV loss 19592680
nsv5524 CNV deletion 18451855
nsv823856 CNV loss 20364138
nsv830838 CNV gain 17160897
nsv949864 CNV duplication 24416366

Relevant External Links for STXBP5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STXBP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STXBP5-AS1 Gene

Disorders for STXBP5-AS1 Gene

Relevant External Links for STXBP5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STXBP5-AS1

No disorders were found for STXBP5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STXBP5-AS1 Gene

Publications for STXBP5-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for STXBP5-AS1 Gene

Sources for STXBP5-AS1 Gene

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