Aliases for STXBP5-AS1 Gene
Subcategory (RNA class) for STXBP5-AS1 Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for STXBP5-AS1 Gene
External Ids for STXBP5-AS1 Gene
- HGNC: 44183
- Entrez Gene: 729178
- Ensembl: ENSG00000233452
Previous GeneCards Identifiers for STXBP5-AS1 Gene
- GC06M147162
Summaries for STXBP5-AS1 Gene
GeneCards Summary for STXBP5-AS1 Gene
STXBP5-AS1 (STXBP5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.
No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STXBP5-AS1 Gene
Genomics for STXBP5-AS1 Gene
Regulatory Elements for STXBP5-AS1 Gene
Enhancers for STXBP5-AS1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH06F146912 | 1.5 | FANTOM5 ENCODE | 20.7 | +289.6 | 289624 | 5.0 | HDGF ARNT CREB3L1 SIN3A FEZF1 FOS SP3 JUNB SMARCB1 MEF2D | STXBP5-AS1 ADGB STXBP5 RAB32 ENSG00000272397 LOC105378042 |
| GH06F146902 | 1 | Ensembl ENCODE | 27.6 | +301.7 | 301701 | 1.5 | CTCF ARNT TBL1XR1 GTF2E2 ZNF644 RAD21 CHAMP1 GATA2 NCOR1 SMC3 | STXBP5-AS1 ENSG00000272397 LOC105378042 |
| GH06F146891 | 1.3 | Ensembl ENCODE | 19.3 | +312.1 | 312101 | 3.0 | HDGF PKNOX1 ATF1 ELK1 GATA2 FOS JUNB REST SMARCB1 CREB3 | STXBP5-AS1 STXBP5 LOC105378042 ENSG00000272397 |
| GH06F146905 | 1 | Ensembl ENCODE | 19.4 | +299.0 | 299014 | 0.4 | JUN RAD21 ZNF316 GATA3 CTBP1 SMC3 RCOR1 TCF7L2 EZH2 RFX1 | STXBP5-AS1 ENSG00000272397 LOC105378042 |
| GH06F146883 | 1.4 | FANTOM5 ENCODE | 6.9 | +319.7 | 319689 | 2.7 | HDGF ATF1 ARID4B DMAP1 ZNF48 YY1 GATA2 ZNF143 KDM4B MXD4 | STXBP5-AS1 STXBP5 LOC105378042 ENSG00000272397 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around STXBP5-AS1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for STXBP5-AS1 Gene
- Chromosome:
- 6
- Start:
- 146,841,388 bp from pter
- End:
- 147,204,614 bp from pter
- Size:
- 363,227 bases
- Orientation:
- Minus strand
Genomic View for STXBP5-AS1 Gene
Genes around STXBP5-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6q24.3 by Ensembl
- 6q24.3 by Entrez Gene
- 6q24.3 by HGNC
STXBP5-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for STXBP5-AS1 Gene
Proteins for STXBP5-AS1 Gene
Post-translational modifications for STXBP5-AS1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for STXBP5-AS1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for STXBP5-AS1
- Origene Custom Protein Services for STXBP5-AS1
- Search GeneTex for Proteins for STXBP5-AS1
Assay Products
No data available for DME Specific Peptides for STXBP5-AS1 Gene
Domains & Families for STXBP5-AS1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STXBP5-AS1 Gene
Function for STXBP5-AS1 Gene
Phenotypes for STXBP5-AS1 Gene
- GenomeRNAi human phenotypes for STXBP5-AS1:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for STXBP5-AS1
-
- Search ViGene Biosciences for STXBP5-AS1
CRISPR Products
- Browse CRISPR knockouts for STXBP5-AS1
miRNA Products
- Search ViGene Biosciences for STXBP5-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for STXBP5-AS1
Clone Products
- GenScript: Custom all cDNA clones Services for STXBP5-AS1
- VectorBuilder custom plasmid, inducible vectors for STXBP5-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for STXBP5-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for STXBP5-AS1
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STXBP5-AS1 Gene
Localization for STXBP5-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STXBP5-AS1 Gene
Transcripts for STXBP5-AS1 Gene
mRNA/cDNA for STXBP5-AS1 Gene
- (5) Additional mRNA sequences :
- (9) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for STXBP5-AS1 Gene
CRISPR Products
- Browse CRISPR knockouts for STXBP5-AS1
miRNA Products
- Search ViGene Biosciences for STXBP5-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for STXBP5-AS1
Clone Products
- GenScript: Custom all cDNA clones Services for STXBP5-AS1
- VectorBuilder custom plasmid, inducible vectors for STXBP5-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for STXBP5-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Relevant External Links for STXBP5-AS1 Gene
- GeneLoc Exon Structure for
- STXBP5-AS1
- ECgene alternative splicing isoforms for
- STXBP5-AS1
Expression for STXBP5-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for STXBP5-AS1 Gene
This gene is overexpressed in Brain - Frontal Cortex (BA9) (x4.6) and Brain - Cortex (x4.1).
SOURCE GeneReport for Unigene cluster for STXBP5-AS1 Gene:
Hs.557608Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for STXBP5-AS1 Gene
Orthologs for STXBP5-AS1 Gene
Evolution for STXBP5-AS1 Gene
- ENSEMBL:
- Gene Tree for STXBP5-AS1 (if available)
- TreeFam:
- Gene Tree for STXBP5-AS1 (if available)
No data available for Orthologs for STXBP5-AS1 Gene
Paralogs for STXBP5-AS1 Gene
No data available for Paralogs for STXBP5-AS1 Gene
Variants for STXBP5-AS1 Gene
| SNP ID | Clin | Chr 06 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs10223422 | -- | 146,889,040(+) | ATTTT(C/T)ACCAT | intron-variant | |
| rs10223489 | -- | 146,899,826(+) | GGggc(C/T)gggtg | intron-variant | |
| rs1022877 | -- | 146,889,541(+) | GCAGC(A/G)TATTA | intron-variant | |
| rs10237471 | -- | 146,939,628(+) | ccagc(A/G)cctgt | intron-variant | |
| rs1031012 | -- | 147,169,684(-) | agaga(G/T)ccaga | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv949864 | CNV | duplication | 24416366 |
| nsv830838 | CNV | gain | 17160897 |
| nsv823856 | CNV | loss | 20364138 |
| nsv5524 | CNV | deletion | 18451855 |
| nsv522096 | CNV | loss | 19592680 |
| nsv514395 | CNV | loss | 21397061 |
| nsv477245 | CNV | novel sequence insertion | 20440878 |
| nsv442013 | CNV | loss | 18776908 |
| nsv442012 | CNV | loss | 18776908 |
| nsv1161461 | CNV | deletion | 26073780 |
| nsv1161460 | CNV | duplication | 26073780 |
| nsv1112908 | CNV | deletion | 24896259 |
| esv3611164 | CNV | gain | 21293372 |
| esv3611163 | CNV | loss | 21293372 |
| esv3611162 | CNV | loss | 21293372 |
| esv3611161 | CNV | loss | 21293372 |
| esv29555 | CNV | loss | 19812545 |
| esv2761057 | CNV | loss | 21179565 |
| esv2760996 | CNV | gain | 21179565 |
| esv274984 | CNV | loss | 21479260 |
| esv2732841 | CNV | deletion | 23290073 |
| esv2659509 | CNV | deletion | 23128226 |
| esv2657211 | CNV | deletion | 23128226 |
| esv2609330 | CNV | deletion | 19546169 |
| esv2500763 | CNV | loss | 19546169 |
| esv2422007 | CNV | deletion | 20811451 |
| esv2296134 | CNV | deletion | 18987734 |
| dgv1228e214 | CNV | loss | 21293372 |
Relevant External Links for STXBP5-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- STXBP5-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STXBP5-AS1 Gene
Disorders for STXBP5-AS1 Gene
Relevant External Links for STXBP5-AS1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- STXBP5-AS1
No disorders were found for STXBP5-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STXBP5-AS1 Gene
Publications for STXBP5-AS1 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
Products for STXBP5-AS1 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for STXBP5-AS1
- Origene Custom Protein Services for STXBP5-AS1
- Browse OriGene Inhibitory RNA Products For STXBP5-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for STXBP5-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For STXBP5-AS1
- GenScript: Custom all cDNA clones Services for STXBP5-AS1
- GenScript Custom Purified and Recombinant Proteins Services for STXBP5-AS1
- GenScript Custom Assay Services for STXBP5-AS1
- GenScript Custom overexpressing Cell Line Services for STXBP5-AS1
- Browse GenScript CRISPR for STXBP5-AS1
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for STXBP5-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Search ViGene Biosciences for STXBP5-AS1
- Cyagen custom Knockout/knockin (KOKI) mouse models for STXBP5-AS1
- VectorBuilder custom plasmid, inducible vectors for STXBP5-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for STXBP5-AS1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for STXBP5-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab