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Aliases for STX18-IT1 Gene

Subcategory (RNA class) for STX18-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STX18-IT1 Gene

  • STX18 Intronic Transcript 1 2 3 5
  • STX18 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for STX18-IT1 Gene

Previous GeneCards Identifiers for STX18-IT1 Gene

  • GC00U933661

Summaries for STX18-IT1 Gene

GeneCards Summary for STX18-IT1 Gene

STX18-IT1 (STX18 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STX18-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STX18-IT1 Gene

Genomics for STX18-IT1 Gene

Regulatory Elements for STX18-IT1 Gene

Enhancers for STX18-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H004540 1.5 FANTOM5 ENCODE 14.8 -60.1 -60142 2 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A STX18-AS1 LINC01396 STX18-IT1 TMEM128 LDHAP1 RN7SKP113 FAM86EP NSG1 STX18 ZBTB49
GH04H004471 1.4 FANTOM5 Ensembl ENCODE 0.4 +8.6 8551 2 ELF3 MLX ZFP64 ARID4B DMAP1 DNMT3B RARA FOS CREM MIXL1 NSG1 TMEM128 STX18-IT1
GH04H004480 0.7 Ensembl ENCODE 0.7 +0.7 699 0 CTCF MAX RAD21 NSG1 STX18-IT1
GH04H004491 1 Ensembl ENCODE 0.4 -10.7 -10679 1 PKNOX1 TBL1XR1 JUN BACH1 JUNB RBBP5 BATF ZNF592 RFX5 PRDM6 ZBTB49 NSG1 PIR62291 STX18-IT1
GH04H004460 0.9 ENCODE 0.4 +19.6 19575 3 ELF3 FOXA2 MLX ARID4B RAD21 THRB ZBTB40 ZSCAN9 RARA YY1 NSG1 STX18-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STX18-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for STX18-IT1 Gene

Chromosome:
4
Start:
4,476,121 bp from pter
End:
4,481,700 bp from pter
Size:
5,580 bases
Orientation:
Minus strand

Genomic View for STX18-IT1 Gene

Genes around STX18-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STX18-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STX18-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STX18-IT1 Gene

Proteins for STX18-IT1 Gene

Post-translational modifications for STX18-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STX18-IT1 Gene

Domains & Families for STX18-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STX18-IT1 Gene

Function for STX18-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for STX18-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STX18-IT1 Gene

Localization for STX18-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STX18-IT1 Gene

Pathways & Interactions for STX18-IT1 Gene

SuperPathways for STX18-IT1 Gene

No Data Available

Interacting Proteins for STX18-IT1 Gene

Gene Ontology (GO) - Biological Process for STX18-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STX18-IT1 Gene

Drugs & Compounds for STX18-IT1 Gene

No Compound Related Data Available

Transcripts for STX18-IT1 Gene

mRNA/cDNA for STX18-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for STX18-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for STX18-IT1 Gene

No ASD Table

Relevant External Links for STX18-IT1 Gene

GeneLoc Exon Structure for
STX18-IT1
ECgene alternative splicing isoforms for
STX18-IT1

Expression for STX18-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STX18-IT1 Gene

genes like me logo Genes that share expression patterns with STX18-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STX18-IT1 Gene

Orthologs for STX18-IT1 Gene

Evolution for STX18-IT1 Gene

ENSEMBL:
Gene Tree for STX18-IT1 (if available)
TreeFam:
Gene Tree for STX18-IT1 (if available)

No data available for Orthologs for STX18-IT1 Gene

Paralogs for STX18-IT1 Gene

No data available for Paralogs for STX18-IT1 Gene

Variants for STX18-IT1 Gene

Sequence variations from dbSNP and Humsavar for STX18-IT1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000050608 -- 4,476,474(+) GGGGA(A/G)CTAGC intron-variant
rs1000300303 -- 4,477,393(+) TTTAT(C/T)TCTAA intron-variant
rs1000848527 -- 4,481,679(+) ATCAA(C/G/T)AGCAA intron-variant, nc-transcript-variant
rs1000975401 -- 4,476,243(+) GAATA(C/G)AGAAT intron-variant
rs1001079058 -- 4,476,058(+) CACCA(C/T)GTAAA intron-variant, downstream-variant-500B

Relevant External Links for STX18-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STX18-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for STX18-IT1 Gene

Disorders for STX18-IT1 Gene

Relevant External Links for STX18-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STX18-IT1

No disorders were found for STX18-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STX18-IT1 Gene

Publications for STX18-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for STX18-IT1 Gene

Sources for STX18-IT1 Gene

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