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Aliases for STX18-IT1 Gene

Subcategory (RNA class) for STX18-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STX18-IT1 Gene

  • STX18 Intronic Transcript 1 2 3 5
  • STX18 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for STX18-IT1 Gene

Previous GeneCards Identifiers for STX18-IT1 Gene

  • GC00U933661

Summaries for STX18-IT1 Gene

GeneCards Summary for STX18-IT1 Gene

STX18-IT1 (STX18 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STX18-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STX18-IT1 Gene

Genomics for STX18-IT1 Gene

GeneHancer (GH) Regulatory Elements for STX18-IT1 Gene

Promoters and enhancers for STX18-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I004480 Enhancer 0.6 Ensembl ENCODE 550.8 +0.7 699 0.8 CTCF MAX RAD21 STX18-IT1 NSG1 STX18
GH04I004471 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 +8.6 8550 2.8 ELF3 MLX ZFP64 ARID4B DMAP1 DNMT3B RARA FOS CREM THAP11 NSG1 TMEM128 STX18-IT1 STX18
GH04I004491 Enhancer 0.9 Ensembl ENCODE 0.4 -10.7 -10679 1.8 MEIS2 PKNOX1 JUN BACH1 PAX8 RBBP5 BATF IRF4 RFX5 ATF7 ZBTB49 NSG1 PIR62291 STX18-IT1 STX18
GH04I004460 Enhancer 0.9 ENCODE 0.4 +19.6 19575 3 ELF3 FOXA2 MLX ARID4B RAD21 THRB ZNF48 ZSCAN9 ZBTB40 RARA NSG1 STX18-IT1 STX18
GH04I004386 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 0.2 +94.5 94499 0.8 MXI1 KLF1 SUZ12 SIN3A ZNF335 ZFHX2 GLIS2 POLR2A ZBTB20 EZH2 NSG1 STX18-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STX18-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for STX18-IT1 Gene

Genomic Locations for STX18-IT1 Gene
chr4:4,476,121-4,481,700
(GRCh38/hg38)
Size:
5,580 bases
Orientation:
Minus strand
chr4:4,477,848-4,483,427
(GRCh37/hg19)

Genomic View for STX18-IT1 Gene

Genes around STX18-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STX18-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STX18-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STX18-IT1 Gene

Proteins for STX18-IT1 Gene

Post-translational modifications for STX18-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STX18-IT1 Gene

Domains & Families for STX18-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STX18-IT1 Gene

Function for STX18-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STX18-IT1 Gene

Localization for STX18-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STX18-IT1 Gene

Pathways & Interactions for STX18-IT1 Gene

SuperPathways for STX18-IT1 Gene

No Data Available

Interacting Proteins for STX18-IT1 Gene

Gene Ontology (GO) - Biological Process for STX18-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STX18-IT1 Gene

Drugs & Compounds for STX18-IT1 Gene

No Compound Related Data Available

Transcripts for STX18-IT1 Gene

mRNA/cDNA for STX18-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STX18-IT1 Gene

No ASD Table

Relevant External Links for STX18-IT1 Gene

GeneLoc Exon Structure for
STX18-IT1
ECgene alternative splicing isoforms for
STX18-IT1

Expression for STX18-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STX18-IT1 Gene

genes like me logo Genes that share expression patterns with STX18-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STX18-IT1 Gene

Orthologs for STX18-IT1 Gene

Evolution for STX18-IT1 Gene

ENSEMBL:
Gene Tree for STX18-IT1 (if available)
TreeFam:
Gene Tree for STX18-IT1 (if available)

No data available for Orthologs for STX18-IT1 Gene

Paralogs for STX18-IT1 Gene

No data available for Paralogs for STX18-IT1 Gene

Variants for STX18-IT1 Gene

Sequence variations from dbSNP and Humsavar for STX18-IT1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000050608 -- 4,476,474(-) A/G intron_variant
rs1000300303 -- 4,477,393(-) T/C intron_variant
rs1000848527 -- 4,481,679(-) T/C/G non_coding_transcript_variant
rs1000975401 -- 4,476,243(-) G/C intron_variant
rs1001079058 -- 4,476,058(-) T/C downstream_transcript_variant

Additional Variant Information for STX18-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STX18-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for STX18-IT1 Gene

Disorders for STX18-IT1 Gene

Additional Disease Information for STX18-IT1

No disorders were found for STX18-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STX18-IT1 Gene

Publications for STX18-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for STX18-IT1 Gene

Sources for STX18-IT1 Gene

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