Free for academic non-profit institutions. Other users need a Commercial license

Aliases for STX18-IT1 Gene

Subcategory (RNA class) for STX18-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STX18-IT1 Gene

  • STX18 Intronic Transcript 1 2 3 5
  • STX18 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for STX18-IT1 Gene

Previous GeneCards Identifiers for STX18-IT1 Gene

  • GC00U933661

Summaries for STX18-IT1 Gene

GeneCards Summary for STX18-IT1 Gene

STX18-IT1 (STX18 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STX18-IT1 Gene

Genomics for STX18-IT1 Gene

Regulatory Elements for STX18-IT1 Gene

Enhancers for STX18-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F004540 1.5 FANTOM5 ENCODE 16.3 -60.1 -60142 2.6 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC LINC01396 STX18-IT1 LDHAP1 RN7SKP113 FAM86EP TMEM128 NSG1 STX18 ZBTB49 STX18-AS1
GH04F004480 0.7 Ensembl ENCODE 0.8 +0.8 799 1.0 CTCF MAX RAD21 NSG1 STX18-IT1
GH04F004471 1.4 FANTOM5 Ensembl ENCODE 0.4 +8.4 8429 3.1 ELF3 MLX ZFP64 ARID4B DMAP1 DNMT3B RARA GATA4 FOS CREM NSG1 TMEM128 STX18-IT1
GH04F004491 1 Ensembl ENCODE 0.4 -10.7 -10679 1.8 PKNOX1 TBL1XR1 MTA2 JUN HLF JUNB RBBP5 TBX21 RFX5 PBX2 NSG1 PIR62291 STX18-IT1
GH04F004460 1.2 Ensembl ENCODE 0.3 +19.6 19575 3.0 ELF3 MLX ARID4B DMAP1 ZNF48 ZSCAN9 RAD21 THRB ZBTB40 RARA NSG1 STX18-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STX18-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for STX18-IT1 Gene

Chromosome:
4
Start:
4,476,121 bp from pter
End:
4,481,700 bp from pter
Size:
5,580 bases
Orientation:
Minus strand

Genomic View for STX18-IT1 Gene

Genes around STX18-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STX18-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STX18-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STX18-IT1 Gene

Proteins for STX18-IT1 Gene

Post-translational modifications for STX18-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STX18-IT1 Gene

Domains & Families for STX18-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STX18-IT1 Gene

Function for STX18-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STX18-IT1 Gene

Localization for STX18-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STX18-IT1 Gene

Pathways & Interactions for STX18-IT1 Gene

SuperPathways for STX18-IT1 Gene

No Data Available

Interacting Proteins for STX18-IT1 Gene

Gene Ontology (GO) - Biological Process for STX18-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STX18-IT1 Gene

Transcripts for STX18-IT1 Gene

mRNA/cDNA for STX18-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STX18-IT1 Gene

No ASD Table

Relevant External Links for STX18-IT1 Gene

GeneLoc Exon Structure for
STX18-IT1
ECgene alternative splicing isoforms for
STX18-IT1

Expression for STX18-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for STX18-IT1 Gene

genes like me logo Genes that share expression patterns with STX18-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for STX18-IT1 Gene

Orthologs for STX18-IT1 Gene

Evolution for STX18-IT1 Gene

ENSEMBL:
Gene Tree for STX18-IT1 (if available)
TreeFam:
Gene Tree for STX18-IT1 (if available)

No data available for Orthologs for STX18-IT1 Gene

Paralogs for STX18-IT1 Gene

No data available for Paralogs for STX18-IT1 Gene

Variants for STX18-IT1 Gene

Sequence variations from dbSNP and Humsavar for STX18-IT1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10031273 -- 4,481,447(+) AAAAG(G/T)TCCCT intron-variant
rs112236582 -- 4,479,830(+) TACAC(A/G)TAAAG intron-variant
rs112516420 -- 4,481,871(+) CGAGT(C/T)TGTTG intron-variant, upstream-variant-2KB
rs112744681 -- 4,477,057(+) AAAAA(A/C)CCAAA intron-variant
rs112854471 -- 4,476,823(+) TGAAG(G/T)TGAGT intron-variant

Relevant External Links for STX18-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STX18-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for STX18-IT1 Gene

Disorders for STX18-IT1 Gene

Relevant External Links for STX18-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STX18-IT1

No disorders were found for STX18-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STX18-IT1 Gene

Publications for STX18-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for STX18-IT1 Gene

Sources for STX18-IT1 Gene

Content
Loading form....