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Aliases for STX18-AS1 Gene

Subcategory (RNA class) for STX18-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for STX18-AS1 Gene

  • STX18 Antisense RNA 1 (Head To Head) 2 3

External Ids for STX18-AS1 Gene

ORGUL Members for STX18-AS1 Gene

Summaries for STX18-AS1 Gene

GeneCards Summary for STX18-AS1 Gene

STX18-AS1 (STX18 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for STX18-AS1 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for STX18-AS1 Gene

Genomics for STX18-AS1 Gene

Genomic Location for STX18-AS1 Gene

Start:
4,542,131 bp from pter
End:
4,710,938 bp from pter
Size:
168,808 bases
Orientation:
Plus strand

Genomic View for STX18-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for STX18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STX18-AS1 Gene

No data available for Regulatory Elements for STX18-AS1 Gene

Proteins for STX18-AS1 Gene

Post-translational modifications for STX18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STX18-AS1 Gene

Domains for STX18-AS1 Gene

Gene Families for STX18-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with STX18-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STX18-AS1 Gene

Function for STX18-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for STX18-AS1 Gene

Localization for STX18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STX18-AS1 Gene

Pathways for STX18-AS1 Gene

SuperPathways for STX18-AS1 Gene

No Data Available

Interacting Proteins for STX18-AS1 Gene

Gene Ontology (GO) - Biological Process for STX18-AS1 Gene

None

No data available for Pathways by source for STX18-AS1 Gene

Transcripts for STX18-AS1 Gene

mRNA/cDNA for STX18-AS1 Gene

(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate STX18-AS1
    • Block miRNA regulation of STX18-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for STX18-AS1

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for STX18-AS1 Gene

    No ASD Table

    Relevant External Links for STX18-AS1 Gene

    GeneLoc Exon Structure for
    STX18-AS1
    ECgene alternative splicing isoforms for
    STX18-AS1

    Expression for STX18-AS1 Gene

    mRNA expression in normal human tissues for STX18-AS1 Gene

    genes like me logo Genes that share expressions with STX18-AS1: view

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for STX18-AS1 Gene

    Orthologs for STX18-AS1 Gene

    Evolution for STX18-AS1 Gene

    ENSEMBL:
    Gene Tree for STX18-AS1 (if available)
    TreeFam:
    Gene Tree for STX18-AS1 (if available)

    No data available for Orthologs for STX18-AS1 Gene

    Paralogs for STX18-AS1 Gene

    No data available for Paralogs for STX18-AS1 Gene

    Variants for STX18-AS1 Gene

    Sequence variations from dbSNP and Humsavar for STX18-AS1 Gene

    SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
    rs1185 -- 4,544,851(-) TAGGG(A/G)TGGCA nc-transcript-variant
    rs703497 -- 4,616,919(+) gatct(C/G)atcac intron-variant
    rs703498 -- 4,637,920(-) ACAAA(C/T)GAGTC intron-variant
    rs722623 -- 4,623,033(+) GAATG(A/T)TAAAA intron-variant
    rs737683 -- 4,619,014(+) tggga(C/T)ctcag intron-variant

    Relevant External Links for STX18-AS1 Gene

    HapMap Linkage Disequilibrium report
    STX18-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for STX18-AS1 Gene

    Disorders for STX18-AS1 Gene

    No disorders were found for STX18-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for STX18-AS1 Gene

    Publications for STX18-AS1 Gene

    1. Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16. (PMID: 23708191) Cordell H.J. … Keavney B.D. (Nat. Genet. 2013) 2 3
    2. Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment. (PMID: 24939585) Fransen E. … Friedman R.A. (Eur. J. Hum. Genet. 2015) 3
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
    4. Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13). (PMID: 22952603) Hart A.B. … Palmer A.A. (PLoS ONE 2012) 3

    Products for STX18-AS1 Gene

    Sources for STX18-AS1 Gene

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