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Aliases for STX18-AS1 Gene

Subcategory (RNA class) for STX18-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STX18-AS1 Gene

  • STX18 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for STX18-AS1 Gene

Summaries for STX18-AS1 Gene

GeneCards Summary for STX18-AS1 Gene

STX18-AS1 (STX18 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STX18-AS1 Gene

Genomics for STX18-AS1 Gene

Regulatory Elements for STX18-AS1 Gene

Enhancers for STX18-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G004540 1.5 FANTOM5 ENCODE 13.3 -0.3 -290 2.6 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 SP3 TMEM128 STX18-AS1 FAM86EP NSG1 STX18 ZBTB49 RPS7P15
GH04G003765 1.1 ENCODE dbSUPER 11.2 -776.5 -776482 1.2 RING1 CTCF SAP130 ARID4B RBBP5 RAD21 ZNF48 ZEB1 HIC1 ZFHX2 NOP14-AS1 STX18-AS1 STX18 ADRA2C ENSG00000250986
GH04G004852 1 Ensembl ENCODE 11.3 +311.0 310976 1.2 RING1 CTCF SUZ12 ETV1 ZMYM3 UBTF RBBP5 ZBTB40 EZH2 RNF2 STX18-AS1 STX18 MSX1 LINC01396
GH04G003792 0.9 ENCODE 11.2 -750.0 -750003 0.1 MLX ZFP64 ARID4B SIN3A ZNF48 SLC30A9 ZNF143 MXD4 NFYC MIER2 NOP14-AS1 ADRA2C ENSG00000250986 STX18-AS1 GC04P003863
GH04G004692 1 ENCODE 7.9 +152.2 152226 4.1 ARID4B DMAP1 YBX1 ZNF48 GATA2 SP5 KAT8 NFIL3 MIER3 RCOR2 STX18-AS1 GC04M004686 LOC101928279
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STX18-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for STX18-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000165223 -31 2201 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3

Genomic Location for STX18-AS1 Gene

Chromosome:
4
Start:
4,542,131 bp from pter
End:
4,710,938 bp from pter
Size:
168,808 bases
Orientation:
Plus strand

Genomic View for STX18-AS1 Gene

Genes around STX18-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STX18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STX18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STX18-AS1 Gene

Proteins for STX18-AS1 Gene

Post-translational modifications for STX18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STX18-AS1 Gene

Domains & Families for STX18-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STX18-AS1 Gene

Function for STX18-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STX18-AS1 Gene

Localization for STX18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STX18-AS1 Gene

Pathways & Interactions for STX18-AS1 Gene

SuperPathways for STX18-AS1 Gene

No Data Available

Interacting Proteins for STX18-AS1 Gene

Gene Ontology (GO) - Biological Process for STX18-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STX18-AS1 Gene

Drugs & Compounds for STX18-AS1 Gene

No Compound Related Data Available

Transcripts for STX18-AS1 Gene

mRNA/cDNA for STX18-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STX18-AS1 Gene

No ASD Table

Relevant External Links for STX18-AS1 Gene

GeneLoc Exon Structure for
STX18-AS1
ECgene alternative splicing isoforms for
STX18-AS1

Expression for STX18-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STX18-AS1 Gene

genes like me logo Genes that share expression patterns with STX18-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STX18-AS1 Gene

Orthologs for STX18-AS1 Gene

Evolution for STX18-AS1 Gene

ENSEMBL:
Gene Tree for STX18-AS1 (if available)
TreeFam:
Gene Tree for STX18-AS1 (if available)

No data available for Orthologs for STX18-AS1 Gene

Paralogs for STX18-AS1 Gene

No data available for Paralogs for STX18-AS1 Gene

Variants for STX18-AS1 Gene

Sequence variations from dbSNP and Humsavar for STX18-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10000106 -- 4,686,171(+) TGCTT(C/G)CCTTG intron-variant
rs1000019231 -- 4,704,405(+) TTTAC(G/T)GCTGG intron-variant
rs1000024380 -- 4,654,773(+) CAGGC(A/G)TGCAC intron-variant
rs1000036579 -- 4,565,890(+) ATGCA(A/C)TGATA intron-variant
rs1000038921 -- 4,625,518(+) TGTGC(C/T)CAGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STX18-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2144946 CNV deletion 18987734
esv21817 CNV loss 19812545
esv2547368 CNV deletion 19546169
esv2659553 CNV deletion 23128226
esv2726968 CNV deletion 23290073
esv34196 OTHER inversion 12058347
esv3599463 CNV loss 21293372
esv3599465 CNV loss 21293372
nsv1007737 CNV gain 25217958
nsv1117055 CNV deletion 24896259
nsv1153463 CNV deletion 26484159
nsv292566 CNV deletion 16902084
nsv521279 CNV loss 19592680
nsv821107 CNV duplication 20802225
nsv829843 CNV loss 17160897

Relevant External Links for STX18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STX18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STX18-AS1 Gene

Disorders for STX18-AS1 Gene

Relevant External Links for STX18-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STX18-AS1

No disorders were found for STX18-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STX18-AS1 Gene

Publications for STX18-AS1 Gene

  1. Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16. (PMID: 23708191) Cordell H.J. … Keavney B.D. (Nat. Genet. 2013) 2 3 64
  2. Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13). (PMID: 22952603) Hart A.B. … Palmer A.A. (PLoS ONE 2012) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for STX18-AS1 Gene

Sources for STX18-AS1 Gene

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