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Aliases for STX18-AS1 Gene

Subcategory (RNA class) for STX18-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STX18-AS1 Gene

  • STX18 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for STX18-AS1 Gene

Summaries for STX18-AS1 Gene

GeneCards Summary for STX18-AS1 Gene

STX18-AS1 (STX18 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STX18-AS1 Gene

Genomics for STX18-AS1 Gene

Regulatory Elements for STX18-AS1 Gene

Enhancers for STX18-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F004852 1 Ensembl ENCODE 11.3 +311.0 310970 1.4 RING1 CTCF SUZ12 ZMYM3 UBTF ZBTB40 EZH2 L3MBTL2 RNF2 NRF1 STX18-AS1 STX18 LINC01396 MSX1
GH04F003792 1 ENCODE 11.2 -750.0 -750003 0.1 MLX ZFP64 ARID4B SIN3A ZNF48 SLC30A9 ZNF143 NFYC MXD4 MIER2 NOP14-AS1 ENSG00000250986 ADRA2C STX18-AS1 GC04P003863
GH04F004692 1.2 Ensembl ENCODE 7.9 +152.2 152226 4.1 ARID4B DMAP1 YBX1 ZNF48 GATA2 SP5 KAT8 NFIL3 MIER3 PBX2 STX18-AS1 GC04M004686 LOC101928279
GH04F003765 0.8 ENCODE 11.2 -776.5 -776482 1.2 RING1 CTCF SAP130 ARID4B ZNF48 RAD21 ZEB1 HIC1 ZFHX2 POLR2A NOP14-AS1 STX18-AS1 STX18 ADRA2C ENSG00000250986
GH04F003767 0.7 ENCODE 11.2 -774.9 -774913 0.2 RING1 CTCF SP5 NRF1 RAD21 SSRP1 ZFHX2 MBD1 KLF9 KDM1A NOP14-AS1 STX18-AS1 STX18 ADRA2C GC04P003863
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STX18-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for STX18-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001428941 -131 2401 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC

Genomic Location for STX18-AS1 Gene

Chromosome:
4
Start:
4,542,131 bp from pter
End:
4,710,938 bp from pter
Size:
168,808 bases
Orientation:
Plus strand

Genomic View for STX18-AS1 Gene

Genes around STX18-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STX18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STX18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STX18-AS1 Gene

Proteins for STX18-AS1 Gene

Post-translational modifications for STX18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STX18-AS1 Gene

Domains & Families for STX18-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STX18-AS1 Gene

Function for STX18-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STX18-AS1 Gene

Localization for STX18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STX18-AS1 Gene

Pathways & Interactions for STX18-AS1 Gene

SuperPathways for STX18-AS1 Gene

No Data Available

Interacting Proteins for STX18-AS1 Gene

Gene Ontology (GO) - Biological Process for STX18-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STX18-AS1 Gene

Transcripts for STX18-AS1 Gene

mRNA/cDNA for STX18-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STX18-AS1 Gene

No ASD Table

Relevant External Links for STX18-AS1 Gene

GeneLoc Exon Structure for
STX18-AS1
ECgene alternative splicing isoforms for
STX18-AS1

Expression for STX18-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for STX18-AS1 Gene

genes like me logo Genes that share expression patterns with STX18-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for STX18-AS1 Gene

Orthologs for STX18-AS1 Gene

Evolution for STX18-AS1 Gene

ENSEMBL:
Gene Tree for STX18-AS1 (if available)
TreeFam:
Gene Tree for STX18-AS1 (if available)

No data available for Orthologs for STX18-AS1 Gene

Paralogs for STX18-AS1 Gene

No data available for Paralogs for STX18-AS1 Gene

Variants for STX18-AS1 Gene

Sequence variations from dbSNP and Humsavar for STX18-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10000106 -- 4,686,171(+) TGCTT(C/G)CCTTG intron-variant
rs10000410 -- 4,686,458(+) TGTAT(G/T)CCAGG intron-variant
rs10001748 -- 4,551,534(+) gaaat(G/T)tctga intron-variant
rs10001750 -- 4,551,535(+) aaatt(C/T)ctgaa intron-variant
rs10005195 -- 4,583,517(+) ttact(A/G)tgttg intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for STX18-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2144946 CNV deletion 18987734
esv21817 CNV loss 19812545
esv2547368 CNV deletion 19546169
esv2659553 CNV deletion 23128226
esv2726968 CNV deletion 23290073
esv34196 OTHER inversion 12058347
esv3599463 CNV loss 21293372
esv3599465 CNV loss 21293372
nsv1007737 CNV gain 25217958
nsv1117055 CNV deletion 24896259
nsv1153463 CNV deletion 26484159
nsv292566 CNV deletion 16902084
nsv521279 CNV loss 19592680
nsv821107 CNV duplication 20802225
nsv829843 CNV loss 17160897

Relevant External Links for STX18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STX18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STX18-AS1 Gene

Disorders for STX18-AS1 Gene

Relevant External Links for STX18-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STX18-AS1

No disorders were found for STX18-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STX18-AS1 Gene

Publications for STX18-AS1 Gene

  1. Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16. (PMID: 23708191) Cordell H.J. … Keavney B.D. (Nat. Genet. 2013) 2 3 64
  2. Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13). (PMID: 22952603) Hart A.B. … Palmer A.A. (PLoS ONE 2012) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for STX18-AS1 Gene

Sources for STX18-AS1 Gene

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