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Aliases for STX18 Gene

Aliases for STX18 Gene

  • Syntaxin 18 2 3 5
  • Cell Growth-Inhibiting Gene 9 Protein 3 4
  • Syntaxin-18 3
  • Ufe1 3

External Ids for STX18 Gene

Previous GeneCards Identifiers for STX18 Gene

  • GC04M004307
  • GC04M004466
  • GC04M004485
  • GC04M004538

Summaries for STX18 Gene

Entrez Gene Summary for STX18 Gene

  • This gene encodes a member of the syntaxin family of soluble N-ethylmaleimide-sensitive factor attachment protein receptors (SNAREs) which is part of a membrane tethering complex that includes other SNAREs and several peripheral membrane proteins, and is involved in vesicular transport between the endoplasmic reticulum (ER) and the Golgi complex. The encoded protein is important for the organization of the smooth, rough, and exit site ER subdomains. A pseudogene of this gene has been identified. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2016]

GeneCards Summary for STX18 Gene

STX18 (Syntaxin 18) is a Protein Coding gene. Among its related pathways are Vesicle-mediated transport and Golgi-to-ER retrograde transport. GO annotations related to this gene include protein domain specific binding and SNAP receptor activity.

UniProtKB/Swiss-Prot for STX18 Gene

  • Syntaxin that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STX18 Gene

Genomics for STX18 Gene

Regulatory Elements for STX18 Gene

Enhancers for STX18 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G003765 1.1 ENCODE dbSUPER 10.7 +776.7 776697 1.2 RING1 CTCF SAP130 ARID4B RBBP5 RAD21 ZNF48 ZEB1 HIC1 ZFHX2 NOP14-AS1 STX18-AS1 STX18 ENSG00000250986 ADRA2C
GH04G004852 1 Ensembl ENCODE 10.7 -310.8 -310761 1.2 RING1 CTCF SUZ12 ETV1 ZMYM3 UBTF RBBP5 ZBTB40 EZH2 RNF2 STX18-AS1 STX18 LINC01396 MSX1
GH04G003767 0.7 ENCODE 10.7 +775.1 775128 0.2 RING1 CTCF SP5 NRF1 RAD21 SSRP1 ZFHX2 MBD1 KLF9 KDM1A NOP14-AS1 STX18-AS1 STX18 ADRA2C GC04P003863
GH04G004540 1.5 FANTOM5 ENCODE 2.1 +0.5 505 2.6 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 SP3 TMEM128 STX18-AS1 FAM86EP NSG1 STX18 ZBTB49 RPS7P15
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STX18 on UCSC Golden Path with GeneCards custom track

Promoters for STX18 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000165223 246 2201 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3

Genomic Location for STX18 Gene

Chromosome:
4
Start:
4,415,742 bp from pter
End:
4,542,346 bp from pter
Size:
126,605 bases
Orientation:
Minus strand

Genomic View for STX18 Gene

Genes around STX18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STX18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STX18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STX18 Gene

Proteins for STX18 Gene

  • Protein details for STX18 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P2W9-STX18_HUMAN
    Recommended name:
    Syntaxin-18
    Protein Accession:
    Q9P2W9
    Secondary Accessions:
    • Q596L3
    • Q5TZP5

    Protein attributes for STX18 Gene

    Size:
    335 amino acids
    Molecular mass:
    38674 Da
    Quaternary structure:
    • Component of a SNARE complex consisting of STX18, USE1L, BNIP1/SEC20L, and SEC22B. RINT1/TIP20L and ZW10 are associated with the complex through interaction with BNIP1/SEC20L. Interacts directly with USE1L and BNIP1/SEC20L.

neXtProt entry for STX18 Gene

Post-translational modifications for STX18 Gene

  • Ubiquitination at Lys143
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for STX18 Gene

Domains & Families for STX18 Gene

Gene Families for STX18 Gene

Protein Domains for STX18 Gene

Suggested Antigen Peptide Sequences for STX18 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9P2W9

UniProtKB/Swiss-Prot:

STX18_HUMAN :
  • Belongs to the syntaxin family.
Family:
  • Belongs to the syntaxin family.
genes like me logo Genes that share domains with STX18: view

Function for STX18 Gene

Molecular function for STX18 Gene

UniProtKB/Swiss-Prot Function:
Syntaxin that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER.

Gene Ontology (GO) - Molecular Function for STX18 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005484 SNAP receptor activity IEA --
GO:0005515 protein binding IPI 15029241
GO:0019904 protein domain specific binding IEA --
genes like me logo Genes that share ontologies with STX18: view
genes like me logo Genes that share phenotypes with STX18: view

Animal Models for STX18 Gene

MGI Knock Outs for STX18:

Animal Model Products

CRISPR Products

miRNA for STX18 Gene

miRTarBase miRNAs that target STX18

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for STX18

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for STX18 Gene

Localization for STX18 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STX18 Gene

Endoplasmic reticulum membrane; Single-pass type IV membrane protein. Golgi apparatus membrane; Single-pass type IV membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for STX18 gene
Compartment Confidence
endoplasmic reticulum 5
golgi apparatus 4
plasma membrane 3
peroxisome 2
mitochondrion 1
nucleus 1
cytosol 1
endosome 1

Gene Ontology (GO) - Cellular Components for STX18 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IEA --
GO:0005622 intracellular IEA --
GO:0005783 endoplasmic reticulum IEA,IDA 10788491
GO:0005789 endoplasmic reticulum membrane TAS --
GO:0005794 Golgi apparatus IEA --
genes like me logo Genes that share ontologies with STX18: view

Pathways & Interactions for STX18 Gene

genes like me logo Genes that share pathways with STX18: view

Gene Ontology (GO) - Biological Process for STX18 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0006886 intracellular protein transport IEA --
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER TAS --
GO:0015031 protein transport IEA --
GO:0016192 vesicle-mediated transport IEA --
genes like me logo Genes that share ontologies with STX18: view

No data available for SIGNOR curated interactions for STX18 Gene

Drugs & Compounds for STX18 Gene

No Compound Related Data Available

Transcripts for STX18 Gene

Unigene Clusters for STX18 Gene

Syntaxin 18:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for STX18

Alternative Splicing Database (ASD) splice patterns (SP) for STX18 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b · 12c ^ 13a · 13b ^ 14a · 14b
SP1: - - - - - - -
SP2: - -
SP3: -
SP4:
SP5:

Relevant External Links for STX18 Gene

GeneLoc Exon Structure for
STX18
ECgene alternative splicing isoforms for
STX18

Expression for STX18 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STX18 Gene

Protein differential expression in normal tissues from HIPED for STX18 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (11.9), Pancreas (11.5), and Bone (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for STX18 Gene



Protein tissue co-expression partners for STX18 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of STX18 Gene:

STX18

SOURCE GeneReport for Unigene cluster for STX18 Gene:

Hs.584913

mRNA Expression by UniProt/SwissProt for STX18 Gene:

Q9P2W9-STX18_HUMAN
Tissue specificity: Ubiquitous.

Evidence on tissue expression from TISSUES for STX18 Gene

  • Nervous system(4.3)
  • Liver(4.2)
  • Muscle(4.2)
genes like me logo Genes that share expression patterns with STX18: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for STX18 Gene

Orthologs for STX18 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for STX18 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia STX18 34
  • 99.6 (n)
dog
(Canis familiaris)
Mammalia STX18 34 35
  • 91.84 (n)
cow
(Bos Taurus)
Mammalia STX18 34 35
  • 89.25 (n)
mouse
(Mus musculus)
Mammalia Stx18 34 16 35
  • 88.92 (n)
rat
(Rattus norvegicus)
Mammalia Stx18 34
  • 88.42 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia STX18 35
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia STX18 35
  • 70 (a)
OneToOne
chicken
(Gallus gallus)
Aves STX18 34 35
  • 78.71 (n)
lizard
(Anolis carolinensis)
Reptilia STX18 35
  • 77 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia stx18 34
  • 72.36 (n)
Str.9979 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.4342 34
zebrafish
(Danio rerio)
Actinopterygii stx18 34
  • 68.48 (n)
CABZ01086801.1 35
  • 66 (a)
OneToOne
Dr.19719 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.1004 34
fruit fly
(Drosophila melanogaster)
Insecta Syx18 34 35
  • 59.7 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011160 34
  • 47.69 (n)
worm
(Caenorhabditis elegans)
Secernentea syx-18 35
  • 19 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons SYP81 34
  • 44.63 (n)
rice
(Oryza sativa)
Liliopsida Os04g0530400 34
  • 48.02 (n)
Species where no ortholog for STX18 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for STX18 Gene

ENSEMBL:
Gene Tree for STX18 (if available)
TreeFam:
Gene Tree for STX18 (if available)

Paralogs for STX18 Gene

Pseudogenes.org Pseudogenes for STX18 Gene

genes like me logo Genes that share paralogs with STX18: view

No data available for Paralogs for STX18 Gene

Variants for STX18 Gene

Sequence variations from dbSNP and Humsavar for STX18 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000012244 -- 4,448,318(+) TATTT(C/T)TAGTG intron-variant
rs1000021155 -- 4,422,380(+) TGGCC(A/G)AGATG intron-variant
rs1000029740 -- 4,484,951(+) GAACA(A/G)GAAGT intron-variant
rs1000030408 -- 4,530,371(+) TAATA(A/T)AAGCA intron-variant, upstream-variant-2KB
rs10000397 -- 4,445,337(+) ggagg(C/T)ggagg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STX18 Gene

Variant ID Type Subtype PubMed ID
esv34196 OTHER inversion 12058347
nsv1007737 CNV gain 25217958
nsv521279 CNV loss 19592680
nsv528931 CNV gain 19592680
nsv966251 CNV duplication 23825009

Variation tolerance for STX18 Gene

Residual Variation Intolerance Score: 52.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.51; 71.87% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for STX18 Gene

Human Gene Mutation Database (HGMD)
STX18
SNPedia medical, phenotypic, and genealogical associations of SNPs for
STX18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for STX18 Gene

Disorders for STX18 Gene

Relevant External Links for STX18

Genetic Association Database (GAD)
STX18
Human Genome Epidemiology (HuGE) Navigator
STX18
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STX18

No disorders were found for STX18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STX18 Gene

Publications for STX18 Gene

  1. Implication of ZW10 in membrane trafficking between the endoplasmic reticulum and Golgi. (PMID: 15029241) Hirose H. … Tagaya M. (EMBO J. 2004) 3 4 22 64
  2. Involvement of BNIP1 in apoptosis and endoplasmic reticulum membrane fusion. (PMID: 15272311) Nakajima K. … Tagaya M. (EMBO J. 2004) 3 4 22 64
  3. Syntaxin 18, a SNAP receptor that functions in the endoplasmic reticulum, intermediate compartment, and cis-Golgi vesicle trafficking. (PMID: 10788491) Hatsuzawa K. … Tagaya M. (J. Biol. Chem. 2000) 2 3 4 64
  4. Maternal genes and facial clefts in offspring: a comprehensive search for genetic associations in two population-based cleft studies from Scandinavia. (PMID: 20634891) Jugessur A. … Murray J.C. (PLoS ONE 2010) 3 46 64
  5. Association between genes on chromosome 4p16 and non-syndromic oral clefts in four populations. (PMID: 20087401) Ingersoll R.G. … Beaty T.H. (Eur. J. Hum. Genet. 2010) 3 46 64

Products for STX18 Gene

  • Addgene plasmids for STX18

Sources for STX18 Gene

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