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Aliases for STT3A-AS1 Gene

Subcategory (RNA class) for STT3A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STT3A-AS1 Gene

  • STT3A Antisense RNA 1 2 3 5

External Ids for STT3A-AS1 Gene

Previous GeneCards Identifiers for STT3A-AS1 Gene

  • GC11M125441

Summaries for STT3A-AS1 Gene

GeneCards Summary for STT3A-AS1 Gene

STT3A-AS1 (STT3A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STT3A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STT3A-AS1 Gene

Genomics for STT3A-AS1 Gene

Regulatory Elements for STT3A-AS1 Gene

Enhancers for STT3A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H125591 1.1 ENCODE 0.7 -0.1 -99 3 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF143 HP11014 CHEK1 MSANTD2 TMEM218 ENSG00000254509 STT3A ENSG00000254694 EI24 CDON DDX25
GH11H125594 0.4 Ensembl 0.7 -2.5 -2466 0 SPI1 RNU6-1156P EI24 CHEK1 DDX25 FEZ1 STT3A-AS1
GH11H125621 0.6 ENCODE 0.3 -29.6 -29563 0 OSR2 JUND ZBTB48 JUN HLF CEBPB OVOL3 FOS EP300 CHEK1 FEZ1 STT3A-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STT3A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for STT3A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000046531 -165 2401 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF143

Genomic Location for STT3A-AS1 Gene

Chromosome:
11
Start:
125,570,198 bp from pter
End:
125,592,635 bp from pter
Size:
22,438 bases
Orientation:
Minus strand

Genomic View for STT3A-AS1 Gene

Genes around STT3A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STT3A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STT3A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STT3A-AS1 Gene

Proteins for STT3A-AS1 Gene

Post-translational modifications for STT3A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STT3A-AS1 Gene

Domains & Families for STT3A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STT3A-AS1 Gene

Function for STT3A-AS1 Gene

Phenotypes From GWAS Catalog for STT3A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STT3A-AS1 Gene

Localization for STT3A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STT3A-AS1 Gene

Pathways & Interactions for STT3A-AS1 Gene

SuperPathways for STT3A-AS1 Gene

No Data Available

Interacting Proteins for STT3A-AS1 Gene

Gene Ontology (GO) - Biological Process for STT3A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STT3A-AS1 Gene

Drugs & Compounds for STT3A-AS1 Gene

No Compound Related Data Available

Transcripts for STT3A-AS1 Gene

mRNA/cDNA for STT3A-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STT3A-AS1 Gene

No ASD Table

Relevant External Links for STT3A-AS1 Gene

GeneLoc Exon Structure for
STT3A-AS1
ECgene alternative splicing isoforms for
STT3A-AS1

Expression for STT3A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STT3A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for STT3A-AS1 Gene

This gene is overexpressed in Testis (x15.4).
genes like me logo Genes that share expression patterns with STT3A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STT3A-AS1 Gene

Orthologs for STT3A-AS1 Gene

Evolution for STT3A-AS1 Gene

ENSEMBL:
Gene Tree for STT3A-AS1 (if available)
TreeFam:
Gene Tree for STT3A-AS1 (if available)

No data available for Orthologs for STT3A-AS1 Gene

Paralogs for STT3A-AS1 Gene

No data available for Paralogs for STT3A-AS1 Gene

Variants for STT3A-AS1 Gene

Sequence variations from dbSNP and Humsavar for STT3A-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000003307 -- 125,569,685(+) ACCGG(A/C)GAGGA intron-variant
rs1000057998 -- 125,593,640(+) CAGGC(A/G)TTCCA intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000094518 -- 125,584,911(+) TGAAG(C/G)GAGAA intron-variant, downstream-variant-500B
rs1000104956 -- 125,577,365(+) CCACC(A/G)CGCAT intron-variant
rs1000211018 -- 125,580,987(+) TGGGA(C/G)AATCG intron-variant

Relevant External Links for STT3A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STT3A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for STT3A-AS1 Gene

Disorders for STT3A-AS1 Gene

Relevant External Links for STT3A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STT3A-AS1

No disorders were found for STT3A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STT3A-AS1 Gene

Publications for STT3A-AS1 Gene

No publications were found for STT3A-AS1 Gene.

Products for STT3A-AS1 Gene

Sources for STT3A-AS1 Gene

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