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Aliases for STT3A-AS1 Gene

Subcategory (RNA class) for STT3A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STT3A-AS1 Gene

  • STT3A Antisense RNA 1 2 3 5

External Ids for STT3A-AS1 Gene

Previous GeneCards Identifiers for STT3A-AS1 Gene

  • GC11M125441

Summaries for STT3A-AS1 Gene

GeneCards Summary for STT3A-AS1 Gene

STT3A-AS1 (STT3A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STT3A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STT3A-AS1 Gene

Genomics for STT3A-AS1 Gene

GeneHancer (GH) Regulatory Elements for STT3A-AS1 Gene

Promoters and enhancers for STT3A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I125591 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.1 -99 3.1 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B STT3A STT3A-AS1 HP11014 TMEM218 CHEK1 MSANTD2 ENSG00000254509 TIRAP ENSG00000254694 EI24
GH11I125568 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.3 +22.6 22602 2.5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 EI24 FEZ1 DDX25 PUS3 RNU6-1156P STT3A-AS1
GH11I125597 Promoter 0.5 EPDnew 0.8 -4.4 -4405 0.1 STT3A CHEK1 EI24 RNU6-1156P STT3A-AS1
GH11I125594 Enhancer 0.4 Ensembl 0.8 -2.5 -2466 0.6 MITF SPI1 RNU6-1156P EI24 CHEK1 DDX25 FEZ1 STT3A STT3A-AS1
GH11I125621 Enhancer 0.6 ENCODE 0.3 -29.6 -29563 1 OSR2 JUND ZBTB48 JUN HLF CEBPB OVOL3 FOS EP300 CHEK1 FEZ1 STT3A-AS1 STT3A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STT3A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for STT3A-AS1 Gene

Genomic Locations for STT3A-AS1 Gene
chr11:125,570,198-125,592,635
(GRCh38/hg38)
Size:
22,438 bases
Orientation:
Minus strand
chr11:125,440,180-125,462,473
(GRCh37/hg19)

Genomic View for STT3A-AS1 Gene

Genes around STT3A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STT3A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STT3A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STT3A-AS1 Gene

Proteins for STT3A-AS1 Gene

Post-translational modifications for STT3A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STT3A-AS1 Gene

Domains & Families for STT3A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STT3A-AS1 Gene

Function for STT3A-AS1 Gene

Phenotypes From GWAS Catalog for STT3A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STT3A-AS1 Gene

Localization for STT3A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STT3A-AS1 Gene

Pathways & Interactions for STT3A-AS1 Gene

SuperPathways for STT3A-AS1 Gene

No Data Available

Interacting Proteins for STT3A-AS1 Gene

Gene Ontology (GO) - Biological Process for STT3A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STT3A-AS1 Gene

Drugs & Compounds for STT3A-AS1 Gene

No Compound Related Data Available

Transcripts for STT3A-AS1 Gene

mRNA/cDNA for STT3A-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STT3A-AS1 Gene

No ASD Table

Relevant External Links for STT3A-AS1 Gene

GeneLoc Exon Structure for
STT3A-AS1
ECgene alternative splicing isoforms for
STT3A-AS1

Expression for STT3A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STT3A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for STT3A-AS1 Gene

This gene is overexpressed in Testis (x15.4).
genes like me logo Genes that share expression patterns with STT3A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STT3A-AS1 Gene

Orthologs for STT3A-AS1 Gene

Evolution for STT3A-AS1 Gene

ENSEMBL:
Gene Tree for STT3A-AS1 (if available)
TreeFam:
Gene Tree for STT3A-AS1 (if available)

No data available for Orthologs for STT3A-AS1 Gene

Paralogs for STT3A-AS1 Gene

No data available for Paralogs for STT3A-AS1 Gene

Variants for STT3A-AS1 Gene

Sequence variations from dbSNP and Humsavar for STT3A-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1057523914 likely-benign, not specified 125,593,735(-) C/G upstream_transcript_variant
rs183072219 likely-benign, not specified 125,593,733(-) T/G upstream_transcript_variant
rs866141679 likely-benign, not specified 125,592,935(-) A/G upstream_transcript_variant
rs1000003307 -- 125,569,685(-) C/A/T intron_variant
rs1000057998 -- 125,593,640(-) A/G upstream_transcript_variant

Additional Variant Information for STT3A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STT3A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for STT3A-AS1 Gene

Disorders for STT3A-AS1 Gene

Additional Disease Information for STT3A-AS1

No disorders were found for STT3A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STT3A-AS1 Gene

Publications for STT3A-AS1 Gene

No publications were found for STT3A-AS1 Gene.

Products for STT3A-AS1 Gene

Sources for STT3A-AS1 Gene

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