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Aliases for STRCP1 Gene

Aliases for STRCP1 Gene

  • Stereocilin Pseudogene 1 2 3 4 5
  • STRCP 3 4
  • Stereocilin Pseudogene 2

External Ids for STRCP1 Gene

Previous HGNC Symbols for STRCP1 Gene

  • STRCP

Previous GeneCards Identifiers for STRCP1 Gene

  • GC15M043991
  • GC15M043893

Summaries for STRCP1 Gene

GeneCards Summary for STRCP1 Gene

STRCP1 (Stereocilin Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STRCP1 Gene

Genomics for STRCP1 Gene

Regulatory Elements for STRCP1 Gene

Enhancers for STRCP1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around STRCP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for STRCP1 Gene

Chromosome:
15
Start:
43,699,379 bp from pter
End:
43,718,262 bp from pter
Size:
18,884 bases
Orientation:
Minus strand

Genomic View for STRCP1 Gene

Genes around STRCP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STRCP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STRCP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STRCP1 Gene

Proteins for STRCP1 Gene

  • Protein details for STRCP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGW2-STRCL_HUMAN
    Recommended name:
    Putative stereocilin-like protein
    Protein Accession:
    A6NGW2

    Protein attributes for STRCP1 Gene

    Size:
    1772 amino acids
    Molecular mass:
    192437 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STRCP1 Gene

Proteomics data for STRCP1 Gene at MOPED

Post-translational modifications for STRCP1 Gene

  • Glycosylation at Asn 65, Asn 427, Asn 476, and Asn 565
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for STRCP1 Gene

Domains & Families for STRCP1 Gene

Protein Domains for STRCP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for STRCP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NGW2

UniProtKB/Swiss-Prot:

STRCL_HUMAN :
  • Belongs to the stereocilin family.
Family:
  • Belongs to the stereocilin family.
genes like me logo Genes that share domains with STRCP1: view

No data available for Gene Families for STRCP1 Gene

Function for STRCP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STRCP1 Gene

Localization for STRCP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STRCP1 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for STRCP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0032426 stereocilium tip IBA --
genes like me logo Genes that share ontologies with STRCP1: view

No data available for Subcellular locations from COMPARTMENTS for STRCP1 Gene

Pathways & Interactions for STRCP1 Gene

SuperPathways for STRCP1 Gene

No Data Available

Interacting Proteins for STRCP1 Gene

Gene Ontology (GO) - Biological Process for STRCP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STRCP1 Gene

Drugs & Compounds for STRCP1 Gene

No Compound Related Data Available

Transcripts for STRCP1 Gene

mRNA/cDNA for STRCP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STRCP1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d · 4e · 4f ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c · 8d ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^
SP1: - - - - - -
SP2:
SP3: -
SP4: -
SP5: - - -
SP6:
SP7: - - -
SP8: -
SP9:
SP10:

ExUns: 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:

Relevant External Links for STRCP1 Gene

GeneLoc Exon Structure for
STRCP1
ECgene alternative splicing isoforms for
STRCP1

Expression for STRCP1 Gene

mRNA expression in normal human tissues for STRCP1 Gene

mRNA differential expression in normal tissues according to GTEx for STRCP1 Gene

This gene is overexpressed in Brain - Cerebellum (x7.9) and Brain - Cerebellar Hemisphere (x7.1).
genes like me logo Genes that share expression patterns with STRCP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for STRCP1 Gene

Orthologs for STRCP1 Gene

Evolution for STRCP1 Gene

ENSEMBL:
Gene Tree for STRCP1 (if available)
TreeFam:
Gene Tree for STRCP1 (if available)

No data available for Orthologs for STRCP1 Gene

Paralogs for STRCP1 Gene

(1) SIMAP similar genes for STRCP1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STRCP1: view

No data available for Paralogs for STRCP1 Gene

Variants for STRCP1 Gene

Relevant External Links for STRCP1 Gene

HapMap Linkage Disequilibrium report
STRCP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for STRCP1 Gene

Disorders for STRCP1 Gene

No disorders were found for STRCP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for STRCP1 Gene

Publications for STRCP1 Gene

  1. CATSPER2, a human autosomal nonsyndromic male infertility gene. (PMID: 12825070) Avidan N. … Beckmann J.S. (Eur. J. Hum. Genet. 2003) 2 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for STRCP1 Gene

Sources for STRCP1 Gene

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