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Aliases for STRCP1 Gene

Aliases for STRCP1 Gene

  • Stereocilin Pseudogene 1 2 3 4
  • STRCP 3 4
  • Stereocilin Pseudogene 2

External Ids for STRCP1 Gene

Previous HGNC Symbols for STRCP1 Gene

  • STRCP

Previous GeneCards Identifiers for STRCP1 Gene

  • GC15M043991
  • GC15M043893

Summaries for STRCP1 Gene

GeneCards Summary for STRCP1 Gene

STRCP1 (Stereocilin Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STRCP1 Gene

Genomics for STRCP1 Gene

Genomic Location for STRCP1 Gene

Start:
43,699,379 bp from pter
End:
43,718,262 bp from pter
Size:
18,884 bases
Orientation:
Minus strand

Genomic View for STRCP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for STRCP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STRCP1 Gene

No data available for Regulatory Elements for STRCP1 Gene

Proteins for STRCP1 Gene

  • Protein details for STRCP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGW2-STRCL_HUMAN
    Recommended name:
    Putative stereocilin-like protein
    Protein Accession:
    A6NGW2
    Secondary Accessions:

    Protein attributes for STRCP1 Gene

    Size:
    1772 amino acids
    Molecular mass:
    192437 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STRCP1 Gene

Proteomics data for STRCP1 Gene at MOPED

Post-translational modifications for STRCP1 Gene

  • Glycosylation at Asn65, Asn427, Asn476, and Asn565
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for STRCP1 Gene

Domains for STRCP1 Gene

Protein Domains for STRCP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for STRCP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NGW2

UniProtKB/Swiss-Prot:

STRCL_HUMAN :
  • A6NGW2
Family:
  • Belongs to the stereocilin family.
genes like me logo Genes that share domains with STRCP1: view

No data available for Gene Families for STRCP1 Gene

Function for STRCP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for STRCP1 Gene

Localization for STRCP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STRCP1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for STRCP1 Gene COMPARTMENTS Subcellular localization image for STRCP1 gene
Compartment Confidence
extracellular 3
plasma membrane 3
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for STRCP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with STRCP1: view

Pathways for STRCP1 Gene

SuperPathways for STRCP1 Gene

No Data Available

Interacting Proteins for STRCP1 Gene

Gene Ontology (GO) - Biological Process for STRCP1 Gene

None

No data available for Pathways by source for STRCP1 Gene

Transcripts for STRCP1 Gene

mRNA/cDNA for STRCP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STRCP1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d · 4e · 4f ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c · 8d ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^
SP1: - - - - - -
SP2:
SP3: -
SP4: -
SP5: - - -
SP6:
SP7: - - -
SP8: -
SP9:
SP10:

ExUns: 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:

Relevant External Links for STRCP1 Gene

GeneLoc Exon Structure for
STRCP1
ECgene alternative splicing isoforms for
STRCP1

Expression for STRCP1 Gene

mRNA expression in normal human tissues for STRCP1 Gene

mRNA differential expression in normal tissues according to GTEx for STRCP1 Gene

This gene is overexpressed in Brain - Cerebellum (7.9) and Brain - Cerebellar Hemisphere (7.1).
genes like me logo Genes that share expressions with STRCP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for STRCP1 Gene

Orthologs for STRCP1 Gene

Evolution for STRCP1 Gene

ENSEMBL:
Gene Tree for STRCP1 (if available)
TreeFam:
Gene Tree for STRCP1 (if available)

No data available for Orthologs for STRCP1 Gene

Paralogs for STRCP1 Gene

Selected SIMAP similar genes for STRCP1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STRCP1: view

No data available for Paralogs for STRCP1 Gene

Variants for STRCP1 Gene

Relevant External Links for STRCP1 Gene

HapMap Linkage Disequilibrium report
STRCP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for STRCP1 Gene

Disorders for STRCP1 Gene

(2) University of Copenhagen DISEASES for STRCP1 Gene

genes like me logo Genes that share disorders with STRCP1: view

No data available for UniProtKB/Swiss-Prot for STRCP1 Gene

Publications for STRCP1 Gene

  1. CATSPER2, a human autosomal nonsyndromic male infertility gene. (PMID: 12825070) Avidan N. … Beckmann J.S. (Eur. J. Hum. Genet. 2003) 2 3 4
  2. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody M.C. … Nusbaum C. (Nature 2006) 4

Products for STRCP1 Gene

Sources for STRCP1 Gene

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