Free for academic non-profit institutions. Other users need a Commercial license

Aliases for STPG3 Gene

Aliases for STPG3 Gene

  • Sperm-Tail PG-Rich Repeat Containing 3 2 3
  • C9orf173 3 4 5
  • Chromosome 9 Open Reading Frame 173 2 5

External Ids for STPG3 Gene

Previous HGNC Symbols for STPG3 Gene

  • C9orf173

Summaries for STPG3 Gene

GeneCards Summary for STPG3 Gene

STPG3 (Sperm-Tail PG-Rich Repeat Containing 3) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STPG3 Gene

Genomics for STPG3 Gene

Genomic Location for STPG3 Gene

Chromosome:
9
Start:
137,250,840 bp from pter
End:
137,253,483 bp from pter
Size:
2,644 bases
Orientation:
Plus strand

Genomic View for STPG3 Gene

Genes around STPG3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STPG3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STPG3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STPG3 Gene

No data available for Regulatory Elements for STPG3 Gene

Proteins for STPG3 Gene

  • Protein details for STPG3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7X2-CI173_HUMAN
    Recommended name:
    Uncharacterized protein C9orf173
    Protein Accession:
    Q8N7X2
    Secondary Accessions:
    • A2RU24
    • B7ZM72
    • B7ZM76
    • Q8NEA3

    Protein attributes for STPG3 Gene

    Size:
    389 amino acids
    Molecular mass:
    42877 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for STPG3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for STPG3 Gene

Proteomics data for STPG3 Gene at MOPED

Post-translational modifications for STPG3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STPG3 Gene

Domains & Families for STPG3 Gene

Protein Domains for STPG3 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with STPG3: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STPG3 Gene

Function for STPG3 Gene

genes like me logo Genes that share phenotypes with STPG3: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STPG3 Gene

Localization for STPG3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STPG3 Gene

Pathways & Interactions for STPG3 Gene

SuperPathways for STPG3 Gene

No Data Available

Interacting Proteins for STPG3 Gene

Gene Ontology (GO) - Biological Process for STPG3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STPG3 Gene

Drugs & Compounds for STPG3 Gene

No Compound Related Data Available

Transcripts for STPG3 Gene

mRNA/cDNA for STPG3 Gene

(6) REFSEQ mRNAs :
(10) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STPG3 Gene

Chromosome 9 open reading frame 173:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for STPG3 Gene

No ASD Table

Relevant External Links for STPG3 Gene

GeneLoc Exon Structure for
STPG3
ECgene alternative splicing isoforms for
STPG3

Expression for STPG3 Gene

SOURCE GeneReport for Unigene cluster for STPG3 Gene Hs.372640

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for STPG3 Gene

Orthologs for STPG3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for STPG3 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia 4933433C11Rik 35
  • 74.75 (n)
  • 67.11 (a)
Stpg3 16
4933433C11Rik 36
  • 55 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf173 35
  • 99.03 (n)
  • 98.38 (a)
C9orf173 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC499746 35
  • 73.93 (n)
  • 67 (a)
dog
(Canis familiaris)
Mammalia C9orf173 36
  • 59 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C9orf173 36
  • 40 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 18 (a)
OneToOne
Species with no ortholog for STPG3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for STPG3 Gene

ENSEMBL:
Gene Tree for STPG3 (if available)
TreeFam:
Gene Tree for STPG3 (if available)

Paralogs for STPG3 Gene

No data available for Paralogs for STPG3 Gene

Variants for STPG3 Gene

Variation tolerance for STPG3 Gene

Residual Variation Intolerance Score: 84.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.34; 63.16% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for STPG3 Gene

HapMap Linkage Disequilibrium report
STPG3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for STPG3 Gene

Disorders for STPG3 Gene

Relevant External Links for STPG3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STPG3

No disorders were found for STPG3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STPG3 Gene

Publications for STPG3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for STPG3 Gene

Sources for STPG3 Gene

Back to Top

Content