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Aliases for STPG2-AS1 Gene

Subcategory (RNA class) for STPG2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STPG2-AS1 Gene

  • STPG2 Antisense RNA 1 2 3 5
  • STPG2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for STPG2-AS1 Gene

Previous GeneCards Identifiers for STPG2-AS1 Gene

  • GC04P098289

Summaries for STPG2-AS1 Gene

GeneCards Summary for STPG2-AS1 Gene

STPG2-AS1 (STPG2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STPG2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STPG2-AS1 Gene

Genomics for STPG2-AS1 Gene

GeneHancer (GH) Regulatory Elements for STPG2-AS1 Gene

Promoters and enhancers for STPG2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I097239 Enhancer 0.7 UCNEbase 0.1 -127.5 -127542 0.2 PKNOX1 POLR2A TCF7L2 EZH2 GC04P097140 STPG2-AS1 STPG2
GH04I097142 Enhancer 0.4 ENCODE 0.1 -225.4 -225411 0.2 USF1 POU5F1 GC04P097140 STPG2-AS1
GH04I097141 Enhancer 0.2 ENCODE 0.1 -224.8 -224794 0.5 GC04P097140 STPG2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STPG2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for STPG2-AS1 Gene

Genomic Locations for STPG2-AS1 Gene
chr4:97,366,926-97,490,164
(GRCh38/hg38)
Size:
123,239 bases
Orientation:
Plus strand
chr4:98,288,077-98,411,315
(GRCh37/hg19)

Genomic View for STPG2-AS1 Gene

Genes around STPG2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STPG2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STPG2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STPG2-AS1 Gene

Proteins for STPG2-AS1 Gene

Post-translational modifications for STPG2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STPG2-AS1 Gene

Domains & Families for STPG2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STPG2-AS1 Gene

Function for STPG2-AS1 Gene

Phenotypes From GWAS Catalog for STPG2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STPG2-AS1 Gene

Localization for STPG2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STPG2-AS1 Gene

Pathways & Interactions for STPG2-AS1 Gene

SuperPathways for STPG2-AS1 Gene

No Data Available

Interacting Proteins for STPG2-AS1 Gene

Gene Ontology (GO) - Biological Process for STPG2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STPG2-AS1 Gene

Drugs & Compounds for STPG2-AS1 Gene

No Compound Related Data Available

Transcripts for STPG2-AS1 Gene

mRNA/cDNA for STPG2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STPG2-AS1 Gene

No ASD Table

Relevant External Links for STPG2-AS1 Gene

GeneLoc Exon Structure for
STPG2-AS1
ECgene alternative splicing isoforms for
STPG2-AS1

Expression for STPG2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STPG2-AS1 Gene

genes like me logo Genes that share expression patterns with STPG2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STPG2-AS1 Gene

Orthologs for STPG2-AS1 Gene

Evolution for STPG2-AS1 Gene

ENSEMBL:
Gene Tree for STPG2-AS1 (if available)
TreeFam:
Gene Tree for STPG2-AS1 (if available)

No data available for Orthologs for STPG2-AS1 Gene

Paralogs for STPG2-AS1 Gene

No data available for Paralogs for STPG2-AS1 Gene

Variants for STPG2-AS1 Gene

Sequence variations from dbSNP and Humsavar for STPG2-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000046247 -- 97,412,229(+) A/T intron_variant
rs1000066285 -- 97,376,091(+) T/C intron_variant
rs1000072453 -- 97,411,986(+) T/A intron_variant
rs1000074529 -- 97,479,801(+) T/C intron_variant
rs1000095772 -- 97,440,566(+) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for STPG2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1515e212 CNV loss 25503493
dgv2861n106 CNV deletion 24896259
dgv887n67 CNV loss 20364138
dgv9177n54 CNV loss 21841781
dgv9178n54 CNV loss 21841781
esv2657643 CNV deletion 23128226
esv2728023 CNV deletion 23290073
esv29651 CNV gain+loss 19812545
esv33388 CNV loss 17666407
esv3410117 CNV insertion 20981092
esv3564306 CNV deletion 23714750
esv3569619 CNV loss 25503493
esv3601518 CNV loss 21293372
esv3601519 CNV gain 21293372
esv6130 CNV loss 19470904
nsv1011217 CNV loss 25217958
nsv436427 CNV deletion 17901297
nsv594920 CNV loss 21841781
nsv594921 CNV loss 21841781
nsv594928 CNV loss 21841781
nsv594931 CNV loss 21841781
nsv819123 CNV gain 19587683
nsv820976 CNV deletion 20802225
nsv822660 CNV loss 20364138
nsv830014 CNV loss 17160897
nsv830016 CNV loss 17160897

Additional Variant Information for STPG2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STPG2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STPG2-AS1 Gene

Disorders for STPG2-AS1 Gene

Additional Disease Information for STPG2-AS1

No disorders were found for STPG2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STPG2-AS1 Gene

Publications for STPG2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for STPG2-AS1 Gene

Sources for STPG2-AS1 Gene

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