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Aliases for STPG2-AS1 Gene

Subcategory (RNA class) for STPG2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STPG2-AS1 Gene

  • STPG2 Antisense RNA 1 2 3 5
  • STPG2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for STPG2-AS1 Gene

Previous GeneCards Identifiers for STPG2-AS1 Gene

  • GC04P098289

Summaries for STPG2-AS1 Gene

GeneCards Summary for STPG2-AS1 Gene

STPG2-AS1 (STPG2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STPG2-AS1 Gene

Genomics for STPG2-AS1 Gene

Regulatory Elements for STPG2-AS1 Gene

Enhancers for STPG2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F097142 0.5 ENCODE 0.1 -225.4 -225412 0.3 TEAD4 POU5F1 GC04P097140 STPG2-AS1
GH04F097141 0.6 ENCODE 0.1 -224.8 -224794 0.5 GC04P097140 STPG2-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around STPG2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for STPG2-AS1 Gene

Chromosome:
4
Start:
97,366,926 bp from pter
End:
97,490,164 bp from pter
Size:
123,239 bases
Orientation:
Plus strand

Genomic View for STPG2-AS1 Gene

Genes around STPG2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STPG2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STPG2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STPG2-AS1 Gene

Proteins for STPG2-AS1 Gene

Post-translational modifications for STPG2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STPG2-AS1 Gene

Domains & Families for STPG2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STPG2-AS1 Gene

Function for STPG2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STPG2-AS1 Gene

Localization for STPG2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STPG2-AS1 Gene

Pathways & Interactions for STPG2-AS1 Gene

SuperPathways for STPG2-AS1 Gene

No Data Available

Interacting Proteins for STPG2-AS1 Gene

Gene Ontology (GO) - Biological Process for STPG2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STPG2-AS1 Gene

Transcripts for STPG2-AS1 Gene

mRNA/cDNA for STPG2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STPG2-AS1 Gene

No ASD Table

Relevant External Links for STPG2-AS1 Gene

GeneLoc Exon Structure for
STPG2-AS1
ECgene alternative splicing isoforms for
STPG2-AS1

Expression for STPG2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for STPG2-AS1 Gene

genes like me logo Genes that share expression patterns with STPG2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for STPG2-AS1 Gene

Orthologs for STPG2-AS1 Gene

Evolution for STPG2-AS1 Gene

ENSEMBL:
Gene Tree for STPG2-AS1 (if available)
TreeFam:
Gene Tree for STPG2-AS1 (if available)

No data available for Orthologs for STPG2-AS1 Gene

Paralogs for STPG2-AS1 Gene

No data available for Paralogs for STPG2-AS1 Gene

Variants for STPG2-AS1 Gene

Sequence variations from dbSNP and Humsavar for STPG2-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10001436 -- 97,425,219(+) tgggt(A/G)tatat intron-variant
rs10002703 -- 97,450,707(+) GGGAT(A/G)GTGCC intron-variant
rs10005977 -- 97,444,377(+) TTTAA(C/T)GCATA intron-variant
rs10010255 -- 97,375,379(+) AAAAA(A/G)TCACT intron-variant
rs10011676 -- 97,370,902(+) accca(A/G)tgaaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STPG2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1515e212 CNV loss 25503493
dgv2861n106 CNV deletion 24896259
dgv887n67 CNV loss 20364138
dgv9177n54 CNV loss 21841781
dgv9178n54 CNV loss 21841781
esv2657643 CNV deletion 23128226
esv2728023 CNV deletion 23290073
esv29651 CNV gain+loss 19812545
esv33388 CNV loss 17666407
esv3410117 CNV insertion 20981092
esv3564306 CNV deletion 23714750
esv3569619 CNV loss 25503493
esv3601518 CNV loss 21293372
esv3601519 CNV gain 21293372
esv6130 CNV loss 19470904
nsv1011217 CNV loss 25217958
nsv436427 CNV deletion 17901297
nsv594920 CNV loss 21841781
nsv594921 CNV loss 21841781
nsv594928 CNV loss 21841781
nsv594931 CNV loss 21841781
nsv819123 CNV gain 19587683
nsv820976 CNV deletion 20802225
nsv822660 CNV loss 20364138
nsv830014 CNV loss 17160897
nsv830016 CNV loss 17160897

Relevant External Links for STPG2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STPG2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STPG2-AS1 Gene

Disorders for STPG2-AS1 Gene

Relevant External Links for STPG2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STPG2-AS1

No disorders were found for STPG2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STPG2-AS1 Gene

Publications for STPG2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for STPG2-AS1 Gene

Sources for STPG2-AS1 Gene

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