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Aliases for STMND1 Gene

Aliases for STMND1 Gene

  • Stathmin Domain Containing 1 2 3

External Ids for STMND1 Gene

Summaries for STMND1 Gene

GeneCards Summary for STMND1 Gene

STMND1 (Stathmin Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STMND1 Gene

Genomics for STMND1 Gene

Genomic Location for STMND1 Gene

Start:
17,102,258 bp from pter
End:
17,131,372 bp from pter
Size:
29,115 bases
Orientation:
Plus strand

Genomic View for STMND1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for STMND1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STMND1 Gene

No data available for Regulatory Elements for STMND1 Gene

Proteins for STMND1 Gene

  • Protein details for STMND1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H3BQB6-STMD1_HUMAN
    Recommended name:
    Stathmin domain-containing protein 1
    Protein Accession:
    H3BQB6
    Secondary Accessions:

    Protein attributes for STMND1 Gene

    Size:
    276 amino acids
    Molecular mass:
    30984 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STMND1 Gene

Proteomics data for STMND1 Gene at MOPED

Post-translational modifications for STMND1 Gene

No Post-translational modifications

Other Protein References for STMND1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for STMND1 Gene

Domains for STMND1 Gene

Protein Domains for STMND1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

STMD1_HUMAN
Domain:
  • Contains 1 SLD (stathmin-like) domain.:
    • H3BQB6
genes like me logo Genes that share domains with STMND1: view

No data available for Gene Families for STMND1 Gene

Function for STMND1 Gene

Gene Ontology (GO) - Molecular Function for STMND1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015631 tubulin binding IBA --
genes like me logo Genes that share ontologies with STMND1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for STMND1 Gene

Localization for STMND1 Gene

Gene Ontology (GO) - Cellular Components for STMND1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with STMND1: view

Pathways for STMND1 Gene

SuperPathways for STMND1 Gene

No Data Available

Interacting Proteins for STMND1 Gene

Gene Ontology (GO) - Biological Process for STMND1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007019 microtubule depolymerization IBA --
GO:0031110 regulation of microtubule polymerization or depolymerization IEA --
GO:0051493 regulation of cytoskeleton organization IBA --
genes like me logo Genes that share ontologies with STMND1: view

No data available for Pathways by source for STMND1 Gene

Transcripts for STMND1 Gene

mRNA/cDNA for STMND1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STMND1 Gene

Stathmin domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for STMND1 Gene

No ASD Table

Relevant External Links for STMND1 Gene

GeneLoc Exon Structure for
STMND1
ECgene alternative splicing isoforms for
STMND1

Expression for STMND1 Gene

mRNA expression in normal human tissues for STMND1 Gene

mRNA differential expression in normal tissues according to GTEx for STMND1 Gene

This gene is overexpressed in Testis (13.4), Pancreas (8.3), and Fallopian Tube (6.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for STMND1 Gene

SOURCE GeneReport for Unigene cluster for STMND1 Gene Hs.677399

genes like me logo Genes that share expressions with STMND1: view

Orthologs for STMND1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for STMND1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC747449 36
  • 97.95 (n)
  • 96.38 (a)
cow
(Bos Taurus)
Mammalia STMND1 36
  • 81.85 (n)
  • 70.74 (a)
STMND1 37
  • 70 (a)
OneToOne
dog
(Canis familiaris)
Mammalia STMND1 36
  • 77.24 (n)
  • 69.74 (a)
STMND1 37
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Stmnd1 36
  • 76.24 (n)
  • 67.64 (a)
Stmnd1 16
Stmnd1 37
  • 66 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia STMND1 37
  • 53 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC102554838 36
  • 74.3 (n)
  • 66.91 (a)
zebrafish
(Danio rerio)
Actinopterygii CU856207.1 37
  • 28 (a)
OneToOne
Species with no ortholog for STMND1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for STMND1 Gene

ENSEMBL:
Gene Tree for STMND1 (if available)
TreeFam:
Gene Tree for STMND1 (if available)

Paralogs for STMND1 Gene

No data available for Paralogs for STMND1 Gene

Variants for STMND1 Gene

Sequence variations from dbSNP and Humsavar for STMND1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs1107867 -- 17,131,012(+) ATTGT(A/G)TGGGC utr-variant-3-prime
rs1980738 -- 17,112,863(+) taaag(A/T)gctgc intron-variant
rs2209260 -- 17,114,676(+) gaggc(A/G)gagct intron-variant
rs3949961 -- 17,113,733(+) aaagt(G/T)ctggg intron-variant
rs4083531 -- 17,125,234(+) TTGAG(G/T)GAATC intron-variant

Relevant External Links for STMND1 Gene

HapMap Linkage Disequilibrium report
STMND1

No data available for Structural Variations from Database of Genomic Variants (DGV) for STMND1 Gene

Disorders for STMND1 Gene

No disorders were found for STMND1 Gene.

No data available for UniProtKB/Swiss-Prot for STMND1 Gene

Publications for STMND1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4

Products for STMND1 Gene

Sources for STMND1 Gene

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