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Aliases for STMND1 Gene

Aliases for STMND1 Gene

  • Stathmin Domain Containing 1 2 3 5

External Ids for STMND1 Gene

Summaries for STMND1 Gene

GeneCards Summary for STMND1 Gene

STMND1 (Stathmin Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include tubulin binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STMND1 Gene

Genomics for STMND1 Gene

Regulatory Elements for STMND1 Gene

Enhancers for STMND1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around STMND1 on UCSC Golden Path with GeneCards custom track

Genomic Location for STMND1 Gene

Chromosome:
6
Start:
17,102,258 bp from pter
End:
17,131,372 bp from pter
Size:
29,115 bases
Orientation:
Plus strand

Genomic View for STMND1 Gene

Genes around STMND1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STMND1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STMND1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STMND1 Gene

Proteins for STMND1 Gene

  • Protein details for STMND1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H3BQB6-STMD1_HUMAN
    Recommended name:
    Stathmin domain-containing protein 1
    Protein Accession:
    H3BQB6

    Protein attributes for STMND1 Gene

    Size:
    276 amino acids
    Molecular mass:
    30984 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STMND1 Gene

Proteomics data for STMND1 Gene at MOPED

Post-translational modifications for STMND1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for STMND1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for STMND1 Gene

Domains & Families for STMND1 Gene

Protein Domains for STMND1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

H3BQB6

UniProtKB/Swiss-Prot:

STMD1_HUMAN :
  • Contains 1 SLD (stathmin-like) domain.
Domain:
  • Contains 1 SLD (stathmin-like) domain.
genes like me logo Genes that share domains with STMND1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for STMND1 Gene

Function for STMND1 Gene

Phenotypes for STMND1 Gene

GenomeRNAi human phenotypes for STMND1:
genes like me logo Genes that share phenotypes with STMND1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STMND1 Gene

Localization for STMND1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STMND1 Gene

Pathways & Interactions for STMND1 Gene

SuperPathways for STMND1 Gene

No Data Available

Interacting Proteins for STMND1 Gene

Gene Ontology (GO) - Biological Process for STMND1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STMND1 Gene

Drugs & Compounds for STMND1 Gene

No Compound Related Data Available

Transcripts for STMND1 Gene

mRNA/cDNA for STMND1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STMND1 Gene

Stathmin domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for STMND1 Gene

No ASD Table

Relevant External Links for STMND1 Gene

GeneLoc Exon Structure for
STMND1
ECgene alternative splicing isoforms for
STMND1

Expression for STMND1 Gene

mRNA expression in normal human tissues for STMND1 Gene

mRNA differential expression in normal tissues according to GTEx for STMND1 Gene

This gene is overexpressed in Testis (x13.4), Pancreas (x8.3), and Fallopian Tube (x6.0).

Protein differential expression in normal tissues from HIPED for STMND1 Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (68.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for STMND1 Gene



SOURCE GeneReport for Unigene cluster for STMND1 Gene Hs.677399

genes like me logo Genes that share expression patterns with STMND1: view

Protein tissue co-expression partners for STMND1 Gene

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for STMND1 Gene

Orthologs for STMND1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for STMND1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia STMND1 35
  • 81.85 (n)
  • 70.74 (a)
STMND1 36
  • 70 (a)
OneToOne
dog
(Canis familiaris)
Mammalia STMND1 35
  • 77.24 (n)
  • 69.74 (a)
STMND1 36
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Stmnd1 35
  • 76.24 (n)
  • 67.64 (a)
Stmnd1 16
Stmnd1 36
  • 66 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LOC747449 35
  • 97.95 (n)
  • 96.38 (a)
rat
(Rattus norvegicus)
Mammalia LOC102554838 35
  • 74.3 (n)
  • 66.91 (a)
oppossum
(Monodelphis domestica)
Mammalia STMND1 36
  • 53 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CU856207.1 36
  • 28 (a)
OneToOne
Species with no ortholog for STMND1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for STMND1 Gene

ENSEMBL:
Gene Tree for STMND1 (if available)
TreeFam:
Gene Tree for STMND1 (if available)

Paralogs for STMND1 Gene

No data available for Paralogs for STMND1 Gene

Variants for STMND1 Gene

Sequence variations from dbSNP and Humsavar for STMND1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1107867 -- 17,131,012(+) ATTGT(A/G)TGGGC utr-variant-3-prime
rs5874593 -- 17,125,153(+) TCTAC(-/A/AA)AAAAA intron-variant
rs5874594 -- 17,125,171(+) AAAAA(-/A/AA)TTAAG intron-variant
rs6459518 -- 17,111,958(+) tatcc(C/G)gcatg intron-variant
rs6459519 -- 17,112,762(+) acaga(A/G)ggaga intron-variant

Variation tolerance for STMND1 Gene

Gene Damage Index Score: 1.93; 35.87% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for STMND1 Gene

Disorders for STMND1 Gene

Relevant External Links for STMND1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STMND1

No disorders were found for STMND1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STMND1 Gene

Publications for STMND1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 67

Products for STMND1 Gene

Sources for STMND1 Gene

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