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Aliases for STEAP2-AS1 Gene

Subcategory (RNA class) for STEAP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STEAP2-AS1 Gene

  • STEAP2 Antisense RNA 1 2 3 5
  • STEAP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for STEAP2-AS1 Gene

Previous GeneCards Identifiers for STEAP2-AS1 Gene

  • GC07M089512

Summaries for STEAP2-AS1 Gene

GeneCards Summary for STEAP2-AS1 Gene

STEAP2-AS1 (STEAP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STEAP2-AS1 Gene

Genomics for STEAP2-AS1 Gene

Regulatory Elements for STEAP2-AS1 Gene

Enhancers for STEAP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F090213 0.9 ENCODE 0.8 -1.5 -1509 0.1 STEAP2-AS1 GC07P090219
GH07F090210 0.2 ENCODE 0.8 0.0 -13 2.3 ARID4B SIN3A GLI4 ZNF48 ZNF2 YY1 GLIS2 ZNF143 KLF7 ZNF263 STEAP1 STEAP2 STEAP2-AS1 GC07P090219
GH07F090187 0.2 ENCODE 0.3 +22.9 22922 1.8 ELF3 MTA2 IKZF1 STEAP1 STEAP2 CFAP69 ENSG00000207488 STEAP2-AS1
GH07F090173 0.6 FANTOM5 0.3 +38.4 38362 0.3 ELF3 TBP ARID4B RAD21 ZBTB40 RARA YY1 CREM MIXL1 THAP11 STEAP1 STEAP2 STEAP2-AS1
GH07F090177 1.1 Ensembl ENCODE 0.3 +32.2 32188 3.2 SOX13 ELF3 TAF1 JUN SIN3A CEBPG BMI1 RELA FOS CREM STEAP1 GTPBP10 STEAP2 STEAP2-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around STEAP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for STEAP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000629981 -365 2401 ARID4B SIN3A GLI4 ZNF48 ZNF2 YY1 GLIS2 ZNF143 KLF7 ZNF263

Genomic Location for STEAP2-AS1 Gene

Chromosome:
7
Start:
89,882,353 bp from pter
End:
90,211,635 bp from pter
Size:
329,283 bases
Orientation:
Minus strand

Genomic View for STEAP2-AS1 Gene

Genes around STEAP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STEAP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STEAP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STEAP2-AS1 Gene

Proteins for STEAP2-AS1 Gene

Post-translational modifications for STEAP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STEAP2-AS1 Gene

Domains & Families for STEAP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STEAP2-AS1 Gene

Function for STEAP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STEAP2-AS1 Gene

Localization for STEAP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STEAP2-AS1 Gene

Pathways & Interactions for STEAP2-AS1 Gene

SuperPathways for STEAP2-AS1 Gene

No Data Available

Interacting Proteins for STEAP2-AS1 Gene

Gene Ontology (GO) - Biological Process for STEAP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STEAP2-AS1 Gene

Transcripts for STEAP2-AS1 Gene

mRNA/cDNA for STEAP2-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STEAP2-AS1 Gene

No ASD Table

Relevant External Links for STEAP2-AS1 Gene

GeneLoc Exon Structure for
STEAP2-AS1
ECgene alternative splicing isoforms for
STEAP2-AS1

Expression for STEAP2-AS1 Gene

mRNA expression in normal human tissues for STEAP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for STEAP2-AS1 Gene

This gene is overexpressed in Prostate (x8.2).
genes like me logo Genes that share expression patterns with STEAP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for STEAP2-AS1 Gene

Orthologs for STEAP2-AS1 Gene

Evolution for STEAP2-AS1 Gene

ENSEMBL:
Gene Tree for STEAP2-AS1 (if available)
TreeFam:
Gene Tree for STEAP2-AS1 (if available)

No data available for Orthologs for STEAP2-AS1 Gene

Paralogs for STEAP2-AS1 Gene

No data available for Paralogs for STEAP2-AS1 Gene

Variants for STEAP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for STEAP2-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10002499 -- 90,076,178(-) aagtt(A/G)tttgc intron-variant
rs10085755 -- 90,195,919(+) TCTTT(G/T)TATCT intron-variant
rs1012425 -- 89,976,862(+) TGTTC(C/T)TTGAT intron-variant
rs1013047 -- 89,891,063(-) AGTGC(C/T)GAAGT intron-variant
rs10155913 -- 90,023,290(+) attta(A/T)aagaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STEAP2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv11493n54 CNV gain 21841781
dgv11494n54 CNV loss 21841781
dgv11495n54 CNV loss 21841781
dgv11496n54 CNV loss 21841781
dgv11497n54 CNV loss 21841781
dgv1933e212 CNV loss 25503493
dgv3611n106 CNV deletion 24896259
dgv3612n106 CNV deletion 24896259
dgv3613n106 CNV deletion 24896259
dgv423n21 CNV loss 19592680
dgv6525n100 CNV gain 25217958
dgv6526n100 CNV gain 25217958
dgv6528n100 CNV loss 25217958
dgv6529n100 CNV gain 25217958
dgv6530n100 CNV loss 25217958
dgv6531n100 CNV gain 25217958
dgv825n27 CNV loss 19166990
esv1001090 CNV deletion 20482838
esv1006022 CNV deletion 20482838
esv1006753 CNV deletion 20482838
esv1598664 CNV insertion 17803354
esv1644512 CNV insertion 17803354
esv1722089 CNV insertion 17803354
esv1732751 CNV deletion 17803354
esv1756690 CNV deletion 17803354
esv1975014 CNV deletion 18987734
esv2395540 CNV deletion 18987734
esv2422216 CNV duplication 17116639
esv2422434 CNV deletion 17116639
esv24241 CNV loss 19812545
esv2549267 CNV deletion 19546169
esv2622947 CNV deletion 19546169
esv2657111 CNV deletion 23128226
esv2665357 CNV deletion 23128226
esv2668491 CNV deletion 23128226
esv2674062 CNV deletion 23128226
esv26892 CNV loss 19812545
esv2734800 CNV deletion 23290073
esv2734801 CNV deletion 23290073
esv2734802 CNV deletion 23290073
esv2734803 CNV deletion 23290073
esv2734804 CNV deletion 23290073
esv2752188 CNV gain 17911159
esv2752191 CNV loss 17911159
esv2759545 CNV gain 17122850
esv2761348 CNV loss 21179565
esv2762685 CNV loss 21179565
esv28689 CNV gain 19812545
esv3278495 CNV deletion 24192839
esv3278606 CNV deletion 24192839
esv3278717 CNV deletion 24192839
esv3542059 CNV deletion 23714750
esv3542060 CNV deletion 23714750
esv3542061 CNV deletion 23714750
esv3542063 CNV deletion 23714750
esv3571974 CNV loss 25503493
esv3571976 CNV loss 25503493
esv3576400 CNV gain 25503493
esv3576402 CNV gain 25503493
esv3576403 CNV gain 25503493
esv3614089 CNV gain 21293372
esv3614091 CNV loss 21293372
esv3614092 CNV loss 21293372
esv3614093 CNV loss 21293372
esv3614094 CNV loss 21293372
esv3614095 CNV loss 21293372
esv3614097 CNV loss 21293372
esv3614098 CNV loss 21293372
esv3614099 CNV gain 21293372
esv3614100 CNV loss 21293372
esv3614101 CNV gain 21293372
esv3614102 CNV loss 21293372
esv3614103 CNV loss 21293372
esv3848 CNV loss 18987735
esv3962 CNV loss 18987735
esv6671 CNV loss 19470904
esv8946 CNV loss 19470904
esv9367 CNV loss 19470904
nsv1018568 CNV loss 25217958
nsv1024247 CNV gain 25217958
nsv1024509 CNV loss 25217958
nsv1034468 CNV gain 25217958
nsv1075042 CNV deletion 25765185
nsv1126802 CNV deletion 24896259
nsv1148975 CNV deletion 26484159
nsv1150858 CNV deletion 26484159
nsv1161583 CNV deletion 26073780
nsv366573 CNV deletion 16902084
nsv437989 CNV loss 16468122
nsv464626 CNV gain 19166990
nsv475326 CNV novel sequence insertion 20440878
nsv479189 CNV novel sequence insertion 20440878
nsv508465 CNV deletion 20534489
nsv510096 OTHER sequence alteration 20534489
nsv510097 OTHER sequence alteration 20534489
nsv511369 CNV loss 21212237
nsv511978 CNV loss 21212237
nsv515997 CNV gain+loss 19592680
nsv517113 CNV loss 19592680
nsv520652 CNV loss 19592680
nsv522933 CNV gain 19592680
nsv525531 CNV loss 19592680
nsv607750 CNV loss 21841781
nsv607752 CNV loss 21841781
nsv607753 CNV loss 21841781
nsv607776 CNV gain 21841781
nsv607777 CNV loss 21841781
nsv607778 CNV loss 21841781
nsv8173 CNV gain 18304495
nsv8174 CNV gain 18304495
nsv818536 CNV gain 17921354
nsv819141 CNV gain 19587683
nsv820812 CNV deletion 20802225
nsv824203 CNV loss 20364138
nsv824204 CNV loss 20364138
nsv824205 CNV loss 20364138
nsv824206 CNV loss 20364138
nsv831058 CNV gain 17160897
nsv951371 CNV deletion 24416366
nsv955995 CNV deletion 24416366
nsv955998 CNV deletion 24416366
nsv957006 CNV deletion 24416366
nsv966856 CNV duplication 23825009
nsv966857 CNV duplication 23825009
nsv970549 CNV duplication 23825009
nsv970550 CNV duplication 23825009
nsv970903 CNV duplication 23825009
nsv970904 CNV duplication 23825009
nsv981547 CNV duplication 23825009

Relevant External Links for STEAP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STEAP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STEAP2-AS1 Gene

Disorders for STEAP2-AS1 Gene

Relevant External Links for STEAP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STEAP2-AS1

No disorders were found for STEAP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STEAP2-AS1 Gene

Publications for STEAP2-AS1 Gene

  1. A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus. (PMID: 25130324) Cai D.C. … Hagoort P. (Genes Brain Behav. 2014) 3 64
  2. Genetics of coronary artery calcification among African Americans, a meta-analysis. (PMID: 23870195) Wojczynski M.K. … Reilly M.P. (BMC Med. Genet. 2013) 3 64
  3. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 64

Products for STEAP2-AS1 Gene

Sources for STEAP2-AS1 Gene

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