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Aliases for STBD1 Gene

Aliases for STBD1 Gene

  • Starch Binding Domain 1 2 3
  • Genethonin 1 2 3
  • GENEX3414 3 6
  • Starch-Binding Domain-Containing Protein 1 3
  • Genethonin-1 4
  • GENX-3414 3

External Ids for STBD1 Gene

Previous GeneCards Identifiers for STBD1 Gene

  • GC04P077446
  • GC04P077227
  • GC04P072979
  • GC04P077173
  • GC04P077175

Summaries for STBD1 Gene

GeneCards Summary for STBD1 Gene

STBD1 (Starch Binding Domain 1) is a Protein Coding gene. Among its related pathways are Diurnally regulated genes with circadian orthologs. GO annotations related to this gene include starch binding.

UniProtKB/Swiss-Prot for STBD1 Gene

  • May have the capability to bind to carbohydrates.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STBD1 Gene

Genomics for STBD1 Gene

Regulatory Elements for STBD1 Gene

Genomic Location for STBD1 Gene

Start:
76,306,026 bp from pter
End:
76,311,599 bp from pter
Size:
5,574 bases
Orientation:
Plus strand

Genomic View for STBD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for STBD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STBD1 Gene

Proteins for STBD1 Gene

  • Protein details for STBD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95210-STBD1_HUMAN
    Recommended name:
    Starch-binding domain-containing protein 1
    Protein Accession:
    O95210
    Secondary Accessions:
    • B3KVZ9

    Protein attributes for STBD1 Gene

    Size:
    358 amino acids
    Molecular mass:
    39007 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STBD1 Gene

Proteomics data for STBD1 Gene at MOPED

Post-translational modifications for STBD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for STBD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for STBD1 Gene

Domains for STBD1 Gene

Protein Domains for STBD1 Gene

Suggested Antigen Peptide Sequences for STBD1 Gene

Graphical View of Domain Structure for InterPro Entry

O95210

UniProtKB/Swiss-Prot:

STBD1_HUMAN :
  • O95210
Domain:
  • Contains 1 CBM20 (carbohydrate binding type-20) domain.
genes like me logo Genes that share domains with STBD1: view

No data available for Gene Families for STBD1 Gene

Function for STBD1 Gene

Molecular function for STBD1 Gene

UniProtKB/Swiss-Prot Function: May have the capability to bind to carbohydrates.

Gene Ontology (GO) - Molecular Function for STBD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 20562859
GO:0030246 carbohydrate binding --
GO:2001070 starch binding IEA --
genes like me logo Genes that share ontologies with STBD1: view

Phenotypes for STBD1 Gene

GenomeRNAi human phenotypes for STBD1:
genes like me logo Genes that share phenotypes with STBD1: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for STBD1 Gene

Localization for STBD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STBD1 Gene

Membrane; Single-pass type III membrane protein. Note=Distributed in the transverse tubules and/or near the junctional sarcoplasmic reticulum.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for STBD1 Gene COMPARTMENTS Subcellular localization image for STBD1 gene
Compartment Confidence
plasma membrane 4
cytosol 2
extracellular 2
endoplasmic reticulum 1
endosome 1
lysosome 1

Gene Ontology (GO) - Cellular Components for STBD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane TAS 9794794
GO:0016020 membrane TAS 9794794
genes like me logo Genes that share ontologies with STBD1: view

Pathways for STBD1 Gene

genes like me logo Genes that share pathways with STBD1: view

Pathways by source for STBD1 Gene

1 BioSystems pathway for STBD1 Gene

Gene Ontology (GO) - Biological Process for STBD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006936 muscle contraction TAS 9794794
genes like me logo Genes that share ontologies with STBD1: view

Transcripts for STBD1 Gene

mRNA/cDNA for STBD1 Gene

(158) Selected AceView cDNA sequences:
(4) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STBD1 Gene

Starch binding domain 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for STBD1 Gene

No ASD Table

Relevant External Links for STBD1 Gene

GeneLoc Exon Structure for
STBD1
ECgene alternative splicing isoforms for
STBD1

Expression for STBD1 Gene

mRNA expression in normal human tissues for STBD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for STBD1 Gene

SOURCE GeneReport for Unigene cluster for STBD1 Gene Hs.109590

mRNA Expression by UniProt/SwissProt for STBD1 Gene

O95210-STBD1_HUMAN
Tissue specificity: Expressed at high level in skeletal and cardiac muscles. Moderately expressed in liver and placenta. No expression is found in pancreas, kidney or lung. Present in skeletal muscle, heart and placenta (at protein level).
genes like me logo Genes that share expressions with STBD1: view

No data available for mRNA differential expression in normal tissues for STBD1 Gene

Orthologs for STBD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for STBD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia STBD1 35
  • 99.26 (n)
  • 98.32 (a)
STBD1 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM47E-STBD1 36
  • 70 (a)
OneToOne
STBD1 35
  • 82.38 (n)
  • 71.9 (a)
dog
(Canis familiaris)
Mammalia FAM47E-STBD1 36
  • 66 (a)
OneToOne
STBD1 35
  • 81.48 (n)
  • 68.01 (a)
mouse
(Mus musculus)
Mammalia Stbd1 35
  • 78.21 (n)
  • 67.76 (a)
Stbd1 16
Stbd1 36
  • 66 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FAM47E-STBD1 36
  • 47 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Stbd1 35
  • 79.36 (n)
  • 69.49 (a)
chicken
(Gallus gallus)
Aves FAM47E-STBD1 36
  • 35 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM47E-STBD1 36
  • 21 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.1765 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.17753 35
zebrafish
(Danio rerio)
Actinopterygii stbd1 36
  • 13 (a)
OneToOne
Species with no ortholog for STBD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for STBD1 Gene

ENSEMBL:
Gene Tree for STBD1 (if available)
TreeFam:
Gene Tree for STBD1 (if available)

Paralogs for STBD1 Gene

Selected SIMAP similar genes for STBD1 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for STBD1 Gene

genes like me logo Genes that share paralogs with STBD1: view

No data available for Paralogs for STBD1 Gene

Variants for STBD1 Gene

Structural Variations from Database of Genomic Variants (DGV) for STBD1 Gene

Variant ID Type Subtype PubMed ID
nsv7363 OTHER Inversion 18451855

Relevant External Links for STBD1 Gene

HapMap Linkage Disequilibrium report
STBD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for STBD1 Gene

Disorders for STBD1 Gene

Relevant External Links for STBD1

Genetic Association Database (GAD)
STBD1
genes like me logo Genes that share disorders with STBD1: view

No data available for UniProtKB/Swiss-Prot for STBD1 Gene

Publications for STBD1 Gene

  1. Molecular cloning and functional expression of a novel human gene encoding two 41-43 kDa skeletal muscle internal membrane proteins. (PMID: 9794794) Bouju S. … Dechesne C.A. (Biochem. J. 1998) 2 3 4 23
  2. Novel gene transcripts preferentially expressed in human muscles revealed by quantitative hybridization of a high density cDNA array. (PMID: 8828038) PiActu G. … Auffray C. (Genome Res. 1996) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Genome-wide association study reveals genetic risk underlying Parkinson's disease. (PMID: 19915575) SimA^n-SA!nchez J. … Gasser T. (Nat. Genet. 2009) 3 48

Products for STBD1 Gene

Sources for STBD1 Gene

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