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Aliases for STAU2-AS1 Gene

Subcategory (RNA class) for STAU2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STAU2-AS1 Gene

  • STAU2 Antisense RNA 1 2 3 5
  • STAU2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for STAU2-AS1 Gene

Previous GeneCards Identifiers for STAU2-AS1 Gene

  • GC08P074334

Summaries for STAU2-AS1 Gene

GeneCards Summary for STAU2-AS1 Gene

STAU2-AS1 (STAU2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STAU2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAU2-AS1 Gene

Genomics for STAU2-AS1 Gene

Regulatory Elements for STAU2-AS1 Gene

Enhancers for STAU2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H073419 1.3 Ensembl ENCODE 0.7 +0.4 376 2 PKNOX1 FOXA2 ATF1 ARNT SIN3A FEZF1 BRCA1 ZNF2 FOS SP3 ENSG00000254538 LOC105375899 LOC646197 GYG1P1 LOC101926908 STAU2-AS1 GC08M073453
GH08H073423 0.8 ENCODE 0.7 +3.6 3647 0 TBP MAX KLF17 FEZF1 ZIC2 RFX5 ZFHX2 GATA3 CTBP1 GATA2 STAU2-AS1 GC08M073453
GH08H073458 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +40.2 40165 3 ATF1 RFX1 L3MBTL2 BHLHE40 ZKSCAN1 ZFHX2 HDAC2 EGR1 FOS HNF4A RDH10 JPH1 GC08M073453 STAU2-AS1
GH08H073450 1 Ensembl ENCODE dbSUPER 0.3 +31.5 31487 2 PKNOX1 PRDM6 ZSCAN5C FOXP2 ZIC2 RDH10 GC08M073453 STAU2-AS1
GH08H073369 1.3 Ensembl ENCODE 0.2 -48.8 -48785 2 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 FOS ATF7 LOC105375899 STAU2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STAU2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for STAU2-AS1 Gene

Chromosome:
8
Start:
73,420,004 bp from pter
End:
73,441,526 bp from pter
Size:
21,523 bases
Orientation:
Plus strand

Genomic View for STAU2-AS1 Gene

Genes around STAU2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAU2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAU2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAU2-AS1 Gene

Proteins for STAU2-AS1 Gene

Post-translational modifications for STAU2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAU2-AS1 Gene

Domains & Families for STAU2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STAU2-AS1 Gene

Function for STAU2-AS1 Gene

Phenotypes From GWAS Catalog for STAU2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAU2-AS1 Gene

Localization for STAU2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STAU2-AS1 Gene

Pathways & Interactions for STAU2-AS1 Gene

SuperPathways for STAU2-AS1 Gene

No Data Available

Interacting Proteins for STAU2-AS1 Gene

Gene Ontology (GO) - Biological Process for STAU2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAU2-AS1 Gene

Drugs & Compounds for STAU2-AS1 Gene

No Compound Related Data Available

Transcripts for STAU2-AS1 Gene

mRNA/cDNA for STAU2-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STAU2-AS1 Gene

STAU2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for STAU2-AS1 Gene

No ASD Table

Relevant External Links for STAU2-AS1 Gene

GeneLoc Exon Structure for
STAU2-AS1
ECgene alternative splicing isoforms for
STAU2-AS1

Expression for STAU2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STAU2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for STAU2-AS1 Gene

This gene is overexpressed in Minor Salivary Gland (x6.4).

SOURCE GeneReport for Unigene cluster for STAU2-AS1 Gene:

Hs.679921
genes like me logo Genes that share expression patterns with STAU2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAU2-AS1 Gene

Orthologs for STAU2-AS1 Gene

Evolution for STAU2-AS1 Gene

ENSEMBL:
Gene Tree for STAU2-AS1 (if available)
TreeFam:
Gene Tree for STAU2-AS1 (if available)

No data available for Orthologs for STAU2-AS1 Gene

Paralogs for STAU2-AS1 Gene

No data available for Paralogs for STAU2-AS1 Gene

Variants for STAU2-AS1 Gene

Sequence variations from dbSNP and Humsavar for STAU2-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000322943 -- 73,432,432(+) GAAGG(C/T)TCTTC intron-variant
rs1000375392 -- 73,432,696(+) ACTTG(C/T)TGCCC intron-variant
rs1000594855 -- 73,438,246(+) CACTC(A/G/T)TGGAG intron-variant
rs1000771537 -- 73,427,784(+) GCTCA(C/T)GAACT intron-variant
rs1000798121 -- 73,432,688(+) GTTAA(A/C/T)CCACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAU2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2671792 CNV deletion 23128226
esv2737154 CNV deletion 23290073
esv28754 CNV loss 19812545
esv3617634 CNV loss 21293372
esv3617635 CNV gain 21293372
nsv1020902 CNV loss 25217958
nsv1124352 CNV deletion 24896259
nsv522502 CNV loss 19592680
nsv524697 CNV loss 19592680

Relevant External Links for STAU2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAU2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAU2-AS1 Gene

Disorders for STAU2-AS1 Gene

Relevant External Links for STAU2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STAU2-AS1

No disorders were found for STAU2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAU2-AS1 Gene

Publications for STAU2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for STAU2-AS1 Gene

Sources for STAU2-AS1 Gene

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