Aliases for STAU2 Gene
Aliases for STAU2 Gene
External Ids for STAU2 Gene
- HGNC: 11371
- Entrez Gene: 27067
- Ensembl: ENSG00000040341
- OMIM: 605920
- UniProtKB: Q9NUL3
Previous GeneCards Identifiers for STAU2 Gene
- GC08M074273
- GC08M074055
- GC08M074382
- GC08M074383
- GC08M074495
- GC08M074332
- GC08M069823
Summaries for STAU2 Gene
-
Staufen homolog 2 is a member of the family of double-stranded RNA (dsRNA)-binding proteins involved in the transport and/or localization of mRNAs to different subcellular compartments and/or organelles. These proteins are characterized by the presence of multiple dsRNA-binding domains which are required to bind RNAs having double-stranded secondary structures. Staufen homolog 2 shares 48.5% and 59.9% similarity with drosophila and human staufen, respectively. The exact function of Staufen homolog 2 is not known, but since it contains 3 copies of conserved dsRNA binding domain, it could be involved in double-stranded RNA binding events. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2009]
GeneCards Summary for STAU2 Gene
STAU2 (Staufen Double-Stranded RNA Binding Protein 2) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include double-stranded RNA binding. An important paralog of this gene is STAU1.
UniProtKB/Swiss-Prot for STAU2 Gene
-
RNA-binding protein required for the microtubule-dependent transport of neuronal RNA from the cell body to the dendrite. As protein synthesis occurs within the dendrite, the localization of specific mRNAs to dendrites may be a prerequisite for neurite outgrowth and plasticity at sites distant from the cell body (By similarity).
Additional gene information for STAU2 Gene
- Monarch Initiative
- Search for STAU2 at DataMed
- Search for STAU2 at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAU2 Gene
Genomics for STAU2 Gene
GeneHancer (GH) Regulatory Elements for STAU2 Gene
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH08I073745 | Promoter/Enhancer | 2 | EPDnew Ensembl ENCODE | 550.8 | +1.0 | 1026 | 3.2 | HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 | STAU2 RDH10 GC08M073613 ENSG00000254538 ENSG00000258677 | |
GH08I073738 | Promoter | 0.9 | EPDnew | 550.4 | +9.3 | 9338 | 0.1 | ZNF639 CEBPB MAFG BACH1 DPF2 ZNF316 SMARCA4 EMSY | STAU2 GC08M073613 ENSG00000254538 ENSG00000258677 | |
GH08I073748 | Enhancer | 0.6 | ENCODE | 550.8 | -0.7 | -683 | 0.2 | HDAC1 CCNT2 ZNF316 SMARCA4 CEBPB CEBPG MNT ZBTB33 | STAU2 GC08M073613 ENSG00000258677 | |
GH08I073793 | Enhancer | 0.9 | UCNEbase ENCODE | 11.8 | -46.1 | -46074 | 0.6 | JUN MAX CEBPB NR2C1 CEBPG NR2F2 NR2C2 | STAU2 GC08M073786 ENSG00000253273 UBE2W ENSG00000258677 | |
GH08I073834 | Enhancer | 0.9 | Ensembl ENCODE | 10.7 | -87.6 | -87633 | 1.9 | BACH1 BATF IRF4 FOSL1 ATF7 BCLAF1 IKZF2 RUNX3 TRIM22 DPF2 | RN7SL760P UBE2W STAU2 ENSG00000258677 |
Regulatory Element Products
Genomic Locations for STAU2 Gene
- chr8:73,420,369-73,747,708
- (GRCh38/hg38)
- Size:
- 327,340 bases
- Orientation:
- Minus strand
- chr8:74,332,604-74,659,943
- (GRCh37/hg19)
Genomic View for STAU2 Gene
- Cytogenetic band:
-
- 8q21.11 by Ensembl
- 8q21.11 by Entrez Gene
- 8q21.11 by HGNC


RefSeq DNA sequence for STAU2 Gene
Proteins for STAU2 Gene
-
Protein details for STAU2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9NUL3-STAU2_HUMAN
- Recommended name:
- Double-stranded RNA-binding protein Staufen homolog 2
- Protein Accession:
- Q9NUL3
- B7Z1I6
- B7Z292
- B7Z8B4
- E7ER74
- E9PEI3
- E9PF26
- E9PF50
- Q6AHY7
- Q96HM0
- Q96HM1
- Q9NVI5
- Q9UGG6
Protein attributes for STAU2 Gene
- Size:
- 570 amino acids
- Molecular mass:
- 62641 Da
- Quaternary structure:
-
- Interacts with the exportin XPO5. This requires RNA and RAN bound to GTP. Interacts with microtubules. Isoform 2 and isoform 3 may also interact with ribosomes, and this association is independent of translation (By similarity). Identified in a mRNP complex, at least composed of DHX9, DDX3X, ELAVL1, HNRNPU, IGF2BP1, ILF3, PABPC1, PCBP2, PTBP2, STAU1, STAU2, SYNCRIP and YBX1. Interacts with TRIM71 (via NHL repeats) in an RNA-dependent manner (PubMed:23125361).
- SequenceCaution:
-
- Sequence=BAA91766.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB14522.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
Protein Expression for STAU2 Gene
Post-translational modifications for STAU2 Gene
- Ubiquitination at posLast=106106
Other Protein References for STAU2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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-
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-
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-
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-
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No data available for DME Specific Peptides for STAU2 Gene
Domains & Families for STAU2 Gene
Gene Families for STAU2 Gene
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Protein Domains for STAU2 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for STAU2 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9NUL3UniProtKB/Swiss-Prot:
STAU2_HUMAN :- The DRBM 3 domain appears to be the major RNA-binding determinant. This domain also mediates interaction with XPO5 and is required for XPO1/CRM1-independent nuclear export (By similarity).
- Domain:
-
- The DRBM 3 domain appears to be the major RNA-binding determinant. This domain also mediates interaction with XPO5 and is required for XPO1/CRM1-independent nuclear export (By similarity).
Function for STAU2 Gene
Molecular function for STAU2 Gene
- GENATLAS Biochemistry:
- Drosophila Staufen homolog 2,ubiquitously expressed,putatively involved in gene regulation
- UniProtKB/Swiss-Prot Function:
- RNA-binding protein required for the microtubule-dependent transport of neuronal RNA from the cell body to the dendrite. As protein synthesis occurs within the dendrite, the localization of specific mRNAs to dendrites may be a prerequisite for neurite outgrowth and plasticity at sites distant from the cell body (By similarity).
Phenotypes From GWAS Catalog for STAU2 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0003723 | RNA binding | HDA | 22658674 |
GO:0003725 | double-stranded RNA binding | IDA,TAS | 21266579 |
GO:0005515 | protein binding | IPI | 21903422 |
Phenotypes for STAU2 Gene
- GenomeRNAi human phenotypes for STAU2:
-
- Increased vaccinia virus (VACV) infection
- Increased gamma-H2AX phosphorylation
- Negative genetic interaction between MUS81-/- and MUS81+/+
- Synthetic lethal with Ras
- Decreased viability after Maraba virus infection
- Synthetic lethal with MLN4924 (a NAE inhibitor)
- Increased viability with MLN4924 (a NAE inhibitor)
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-
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miRNA for STAU2 Gene
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-
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Cell Line Products
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No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for STAU2 Gene
Localization for STAU2 Gene
Subcellular locations from UniProtKB/Swiss-Prot for STAU2 Gene
- Cytoplasm. Nucleus. Nucleus, nucleolus. Endoplasmic reticulum. Note=Shuttles between the nucleolus, nucleus and the cytoplasm. Nuclear export of isoform 1 is independent of XPO1/CRM1 and requires the exportin XPO5. Nuclear export of isoform 2 and isoform 3 can occur by both XPO1/CRM1-dependent and XPO1/CRM1-independent pathways. Found in large cytoplasmic ribonucleoprotein (RNP) granules which are present in the actin rich regions of myelinating processes and associated with microtubules, polysomes and the endoplasmic reticulum. Also recruited to stress granules (SGs) upon inhibition of translation or oxidative stress. These structures are thought to harbor housekeeping mRNAs when translation is aborted (By similarity). {ECO:0000250}.
- Cytosol (3)
- Nucleoplasm (3)
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005634 | nucleus | IEA | -- |
GO:0005730 | nucleolus | IEA | -- |
GO:0005737 | cytoplasm | IEA | -- |
GO:0005783 | endoplasmic reticulum | IEA | -- |
GO:0005874 | microtubule | IEA | -- |
Pathways & Interactions for STAU2 Gene
Interacting Proteins for STAU2 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006810 | transport | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for STAU2 Gene
Drugs & Compounds for STAU2 Gene
Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
---|---|---|---|---|---|---|
Guanosine triphosphate | Experimental | Pharma | 0 |
Transcripts for STAU2 Gene
mRNA/cDNA for STAU2 Gene
- (7) REFSEQ mRNAs :
- (23) Additional mRNA sequences :
- (446) Selected AceView cDNA sequences:
- (29) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for STAU2 Gene
- Staufen, RNA binding protein, homolog 2 (Drosophila):
- Representative Sequences:
CRISPR Products
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-
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- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for STAU2
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for STAU2 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for STAU2 Gene
NURSA nuclear receptor signaling pathways regulating expression of STAU2 Gene:
STAU2SOURCE GeneReport for Unigene cluster for STAU2 Gene:
Hs.561815Evidence on tissue expression from TISSUES for STAU2 Gene
- Nervous system(4.6)
- Eye(4.2)
Primer Products
-
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-
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No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAU2 Gene
Orthologs for STAU2 Gene
This gene was present in the common ancestor of animals.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | STAU2 33 |
|
||
dog (Canis familiaris) |
Mammalia | STAU2 33 34 |
|
||
cow (Bos Taurus) |
Mammalia | STAU2 33 34 |
|
||
mouse (Mus musculus) |
Mammalia | Stau2 33 16 34 |
|
||
rat (Rattus norvegicus) |
Mammalia | Stau2 33 |
|
||
oppossum (Monodelphis domestica) |
Mammalia | STAU2 34 |
|
OneToOne | |
platypus (Ornithorhynchus anatinus) |
Mammalia | -- 34 |
|
OneToMany | |
-- 34 |
|
OneToMany | |||
-- 34 |
|
OneToMany | |||
chicken (Gallus gallus) |
Aves | STAU2 33 34 |
|
||
lizard (Anolis carolinensis) |
Reptilia | STAU2 34 |
|
OneToOne | |
tropical clawed frog (Silurana tropicalis) |
Amphibia | stau2 33 |
|
||
Str.11080 33 |
|
||||
African clawed frog (Xenopus laevis) |
Amphibia | stau2-prov 33 |
|
||
zebrafish (Danio rerio) |
Actinopterygii | stau2 33 34 |
|
||
zgc55287 33 |
|
||||
African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP007478 33 |
|
||
fruit fly (Drosophila melanogaster) |
Insecta | stau 34 |
|
OneToMany | |
worm (Caenorhabditis elegans) |
Secernentea | stau-1 34 |
|
OneToMany |
- Species where no ortholog for STAU2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for STAU2 Gene
(4) SIMAP similar genes for STAU2 Gene using alignment to 14 proteins:
Pseudogenes.org Pseudogenes for STAU2 Gene
Variants for STAU2 Gene
SNP ID | Clin | Chr 08 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs1000003938 | -- | 73,673,358(-) | A/G | intron_variant | |
rs1000006349 | -- | 73,620,480(-) | C/T | intron_variant | |
rs1000022214 | -- | 73,582,623(-) | G/A | intron_variant | |
rs1000028659 | -- | 73,729,915(-) | T/C | intron_variant | |
rs1000048025 | -- | 73,462,102(-) | A/G | genic_downstream_transcript_variant, intron_variant |
Additional Variant Information for STAU2 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for STAU2 Gene
Disorders for STAU2 Gene
Additional Disease Information for STAU2
- Genetic Association Database
- (GAD)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for STAU2 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAU2 Gene
Publications for STAU2 Gene
- Staufen2 isoforms localize to the somatodendritic domain of neurons and interact with different organelles. (PMID: 12140260) Duchaîne TF … DesGroseillers L (Journal of cell science 2002) 3 4 22 58
- Identification of a novel homolog of the Drosophila staufen protein in the chromosome 8q13-q21.1 region. (PMID: 10585778) Buchner G … Franco B (Genomics 1999) 2 3 4 58
- The mammalian TRIM-NHL protein TRIM71/LIN-41 is a repressor of mRNA function. (PMID: 23125361) Loedige I … Filipowicz W (Nucleic acids research 2013) 3 4 58
- A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PMID: 16964243) Beausoleil SA … Gygi SP (Nature biotechnology 2006) 3 4 58
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
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- Cyagen custom Knockout/knockin (KOKI) mouse models for STAU2
- VectorBuilder custom plasmid, inducible vectors for STAU2
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for STAU2
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- GeneTex STAU2 antibody for STAU2
- Search GeneTex for Proteins for STAU2
- Search ViGene Biosciences for STAU2
- Santa Cruz Biotechnology (SCBT) Antibodies for STAU2
- Search Santa Cruz Biotechnology (SCBT) for STAU2 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for STAU2
- Horizon Cell Lines for STAU2
Sources for STAU2 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew