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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

STAT6 Gene

protein-coding GIFtS: 69
GCID: GC12M057489

signal transducer and activator of transcription 6, interleukin-4...

Explore 67 diseases affiliated with
STAT6 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Signal Transducer And Activator Of Transcription 6, Interleukin-4 Induced¹ ²		STAT, Interleukin4-Induced²
D12S1644¹ ²		Transcription Factor IL-4 STAT²
IL-4-STAT¹ ²		IL-4 Stat³
STAT6B²		EC 2.4.1.227⁸
STAT6C²		EC 2.7.7.6⁸
Signal Transducer And Activator Of Transcription 6²

External Ids:	HGNC: 11368¹	Entrez Gene: 6778²	Ensembl: ENSG00000166888⁷	OMIM: 601512⁵	UniProtKB: P42226³

Export aliases for STAT6 gene to outside databases

Previous GC identifers: GC12M057464 GC12M057713 GC12M057205 GC12M055775 GC12M054527

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for STAT6:

The protein encoded by this gene is a member of the STAT family of transcription factors. In response to cytokines and

growth factors, STAT family members are phosphorylated by the receptor associated kinases, and then form homo- or

heterodimers that translocate to the cell nucleus where they act as transcription activators. This protein plays a

central role in exerting IL4 mediated biological responses. It is found to induce the expression of BCL2L1/BCL-X(L),

which is responsible for the anti-apoptotic activity of IL4. Knockout studies in mice suggested the roles of this gene

in differentiation of T helper 2 (Th2) cells, expression of cell surface markers, and class switch of immunoglobulins.

Alternative splicing results in multiple transcript variants.(provided by RefSeq, May 2010)

UniProtKB/Swiss-Prot: STAT6_HUMAN, P42226

Function: Carries out a dual function: signal transduction and activation of transcription. Involved in interleukin-4

signalling

Gene Wiki entry for STAT6

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000012.11 NC_018923.1 NT_029419.12

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the STAT6 gene promoter:
AP-2alpha isoform 3 AP-1 AP-2alpha isoform 2 NF-kappaB STAT3 AP-2alpha isoform 4 NF-kappaB1 AP-2alpha AP-2alphaA
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: STAT6 promoter sequence

Search SABiosciences Chromatin IP Primers for STAT6

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat STAT6

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q13 Ensembl cytogenetic band: 12q13.3 HGNC cytogenetic band: 12q13

STAT6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
STAT6 gene location

GeneLoc information about chromosome 12 GeneLoc Exon Structure

GeneLoc location for GC12M057489: view genomic region (about GC identifiers)

Start:	57,489,187 bp from pter	End:	57,525,922 bp from pter
Size:	36,736 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: STAT6_HUMAN, P42226 (See protein sequence)

Recommended Name: Signal transducer and activator of transcription 6

Size: 847 amino acids; 94135 Da

Subunit: Forms a homodimer or a heterodimer with a related family member (By similarity). Interacts with NCOA1 via its

C-terminal LXXLL motif

Subcellular location: Cytoplasm. Nucleus. Note=Translocated into the nucleus in response to phosphorylation

1 PDB 3D structure from and Proteopedia for STAT6:

1OJ5 (3D)

Secondary accessions: A8K316 B7ZA27 F5GXI9 Q5FBW5 Q71UP4

Alternative splicing: 3 isoforms: P42226-1 P42226-2 P42226-3 (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for STAT6: NX_P42226

Post-translational modifications:

Tyrosine phosphorylated following stimulation by IL-4 and IL-3 (By similarity)¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_P42226

2 DME Specific Peptides for STAT6 (P42226)

GGSLGAQ

GRGYVPA

STAT6 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (5 alternative transcripts):

NP_001171549.1 NP_001171550.1 NP_001171551.1 NP_001171552.1 NP_003144.3

ENSEMBL proteins:

ENSP00000300134 ENSP00000445409 ENSP00000438451 ENSP00000451742 ENSP00000444530

ENSP00000401486 ENSP00000451909 ENSP00000450428 ENSP00000450921 ENSP00000451546

ENSP00000452394 ENSP00000452373 ENSP00000451074 ENSP00000452203 ENSP00000450510

ENSP00000450665 ENSP00000451209 ENSP00000450747 ENSP00000450732 ENSP00000441002

Reactome Protein details: P42226
Human Recombinant Protein Products for STAT6:

	EMD Millipore Purified and/or Recombinant STAT6 Protein
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	OriGene Purified Protein: STAT6 OriGene Protein Over-expression Lysate: STAT6 OriGene Custom Protein Services for STAT6
	GenScript Custom Purified and Recombinant Proteins Services for STAT6
	Novus Biologicals STAT6 Proteins Novus Biologicals STAT6 Lysates
	Browse Sino Biological Recombinant Proteins
	Browse ProSpec Recombinant Proteins
	Uscn Proteins for STAT6

Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000790	nuclear chromatin	IEA	--
GO:0005634	nucleus	IDA	--
GO:0005730	NOT nucleolus	IDA	--
GO:0005737	cytoplasm	IDA	--
GO:0005829	cytosol	TAS	--

STAT6 for ontologies About GeneDecksing

STAT6 Antibody Products:

	EMD Millipore Mono- and Polyclonal Antibodies for the study of STAT6
	R&D Systems Antibodies for STAT6
	Cell Signaling Technology (CST) Antibodies for STAT6
	OriGene Antibodies (see all 5): STAT6 OriGene Custom Antibody Services for STAT6
	GenScript Custom Superior Antibodies Services for STAT6
	Novus Biologicals STAT6 Antibodies
	Abcam antibodies for STAT6
	Uscn Antibodies for STAT6
	ThermoFisher Antibody for STAT6

Assay Products for STAT6:

	EMD Millipore Kits and Assays for the Analysis of STAT6
	OriGene Custom Immunoassay Development Browse OriGene Fluorogenic Cell Assay Kits
	R&D Systems ELISAs for STAT6 (see all)
	GenScript Custom Assay Services for STAT6
	Cell Signaling Technology (CST) Sandwich ELISA Kits for STAT6
	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for STAT6

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

STAT6 for domains About GeneDecksing

5/9 InterPro domains/families (see all 9):

IPR013801 STAT_TF_DNA-bd

IPR008967 p53-like_TF_DNA-bd

IPR011992 EF-hand-like_dom

IPR013800 STAT_TF_alpha

IPR000980 SH2

Graphical View of Domain Structure for InterPro Entry P42226

ProtoNet protein and cluster: P42226

1 Blocks protein family: IPB001217 STAT protein

UniProtKB/Swiss-Prot: STAT6_HUMAN, P42226

Similarity: Belongs to the transcription factor STAT family

Similarity: Contains 1 SH2 domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: STAT6_HUMAN, P42226

Function: Carries out a dual function: signal transduction and activation of transcription. Involved in interleukin-4

signalling

Genatlas biochemistry entry for STAT6:

signal transducer and activator of transcription 6,specifically activated by IL4 and IL13,overlapping D12S1644,with

several alternatively spliced variants,expressed at higher levels in pancreatic beta cells

Enzyme Numbers (IUBMB): EC 2.7.7.6² EC 2.4.1.227²

Gene Ontology (GO): 5/8 molecular function terms (GO ID links to tree view) (see all 8): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	IEA	--
GO:0003677	DNA binding	--	--
GO:0003700	sequence-specific DNA binding transcription factor activity	IEA	--
GO:0004871	signal transducer activity	IEA	--
GO:0005509	calcium ion binding	IEA	--

STAT6 for ontologies About GeneDecksing

Phenotypes:
2 GenomeRNAi human phenotypes for STAT6:

Cell cycle / mitosis defect

Decreased nuclei size in G2M

14 MGI mutant phenotypes (inferred from 3 alleles) (MGI details for Stat6):

cellular	endocrine/exocrine gland	growth/size	hematopoietic system	homeostasis/metabolism
immune system	integument	liver/biliary system	mortality/aging	renal/urinary system
reproductive system	respiratory system	tumorigenesis	vision/eye

STAT6 for phenotypes About GeneDecksing

Animal Models:
Mouse knock-outs for STAT6: Stat6^tm1Gru Stat6^tm1Aki Stat6^tm1Jni

inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for STAT6

		10/89 SABiosciences Target genes for STAT6 (see all 89):
		ACCSL ALG1 ASRGL1 ATG16L1 AZFP C14orf2 CCDC63 CLDN8 CNOT2 CTAGE1

miRNA Products:		OriGene 3'-UTR Clone: STAT6 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat STAT6
		8/18 QIAGEN miScript miRNA Assays for microRNAs that regulate STAT6 (see all 18):
		hsa-miR-3673 hsa-let-7a-2* hsa-miR-144 hsa-miR-649 hsa-let-7g* hsa-miR-651 hsa-miR-18b* hsa-miR-3163

		SwitchGear 3'UTR luciferase reporter plasmid: STAT6 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for STAT6 (see all 7) OriGene shRNA RFP: STAT6 OriGene siRNA: STAT6
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat STAT6
		Sirion Biotech Custom design and validation of potent shRNA sequences against STAT6

Gene Editing Products:			DNA2.0 Custom Protein Engineering Service for STAT6
			Sirion Biotech Customized adenovirus for overexpression of STAT6 Sirion Biotech Customized adenovirus for potent knockdown of STAT6

Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for STAT6 (see all 7) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for STAT6 (see all 5) OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector (see all 5): STAT6 (NM_003153)
		Browse Sino Biological Human cDNA Clones
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for STAT6
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat STAT6

Cell Line Products:		GenScript Custom overexpressing Cell Line Services for STAT6
		Search LifeMap BioReagents cell lines for STAT6
		Sirion Biotech Customized stable knockdown cell line services for STAT6 Sirion Biotech Customized inducible knockdown cell line services for STAT6 Sirion Biotech Customized stable overexpressing cell line services for STAT6 Sirion Biotech Customized inducible overexpressing cell line services for STAT6

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for STAT6

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/23 super-pathways (see all 23) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

CNTF Signaling

	CNTF Signaling	1.00			IL-3 Pathway	0.46
	FLT3 Signaling	0.50

Immune response_IL-4 signaling pathway

Immune response_IL-4 signaling pathway

1.00

Immune response IL-4 signaling pathway

0.98

GPCR Pathway

GPCR Pathway

1.00

Pancreatic Adenocarcinoma

0.55

Development_PDGF signaling via STATs and NF-kB

Development PDGF signaling via STATs and NF-kB

1.00

Development_PDGF signaling via STATs and NF-kB

1.00

IL-9 Signaling Pathways

Common Cytokine Receptor Gamma-Chain Family Signaling Pathways

0.90

IL-4 Signaling Pathways

0.80

Pathway sources
See GeneCards unified pathways
Show all pathways

2 EMD Millipore Pathways for STAT6

	Development PDGF signaling via STATs and NF-kB
	Immune response IL-4 signaling pathway

3 R&D Systems Pathways for STAT6

	IL-4 Signaling and its Primary Biological Effects in Different Immune Cell Types
	IL-4 Signaling Pathways
	Common Cytokine Receptor Gamma-Chain Family Signaling Pathways

5/12 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for STAT6 (see all 12)

	ErbB2-ErbB3 Heterodimers
	FLT3 Signaling
	MAPK Signaling
	IL-4 Pathway
	CNTF Signaling

1 Cell Signaling Technology (CST) Pathway for STAT6

Jak/Stat Pathway

2 GeneGo (Thomson Reuters) Pathways for STAT6

	Immune response IL-4 signaling pathway
	Development PDGF signaling via STATs and NF-kB

5/7 BioSystems Pathways for STAT6 (see all 7)

	Adipogenesis
	TSLP Signaling Pathway
	IL-4 signaling Pathway
	IL-3 Signaling Pathway
	Signaling events mediated by TCPTP

3 Reactome Pathways for STAT6

	Downstream signal transduction
	Signal Transduction
	Signaling by PDGF

1 Kegg Pathway (Kegg details for STAT6):

Jak-STAT signaling pathway

STAT6 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for STAT6

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/96 Interacting proteins for STAT6 (P42226^{1, 2, 3} ENSP00000300134⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 96)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
IL4R	P24394²^,³, ENSP00000170630⁴	MINT-8035396 MINT-8038145 MINT-8037219 MINT-8038160 I2D: score=4 STRING: ENSP00000170630
HIST2H3D	Q71DI3³, ENSP00000333277⁴	I2D: score=1 STRING: ENSP00000333277
HIST2H3A	Q71DI3³	I2D: score=1
HIST2H3C	Q71DI3³	I2D: score=1
CREBBP	Q92793³, ENSP00000262367⁴	I2D: score=4 STRING: ENSP00000262367

About this table

Gene Ontology (GO): 5/13 biological process terms (GO ID links to tree view) (see all 13): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	IEA	--
GO:0002296	T-helper 1 cell lineage commitment	IEA	--
GO:0002829	negative regulation of type 2 immune response	IEA	--
GO:0006351	transcription, DNA-dependent	IEA	--
GO:0006357	regulation of transcription from RNA polymerase II promoter	TAS	8810328

STAT6 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

STAT6 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for STAT6
10/28 Novoseek chemical compound relationships for STAT6 gene (see all 28) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine	63	87	12459556 (5), 9545332 (4), 10627454 (3), 7760829 (3) (see all 47)
ifn-alpha	40.3	2	11991671 (1), 19707593 (1)
pd 98,059	37.2	2	12801927 (1), 17264307 (1)
mg 132	35.5	1	10654938 (1)
sb 203580	26.8	1	17264307 (1)
phosphatidylinositol	19.4	4	15684740 (1), 10452990 (1), 18716132 (1), 15733066 (1)
cycloheximide	17.9	2	8703030 (1), 12459556 (1)
4-hydroxytamoxifen	17.8	4	9686563 (1), 10626890 (1)
cytidine	16.3	2	14978013 (1), 14767694 (1)
wortmannin	12.1	1	9312117 (1)

Search CenterWatch for drugs/clinical trials and news about STAT6

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for STAT6 gene (5 alternative transcripts):

NM_001178078.1 NM_001178079.1 NM_001178080.1 NM_001178081.1 NM_003153.4

Unigene Cluster for STAT6:

Signal transducer and activator of transcription 6, interleukin-4 induced

Hs.524518 [show with all ESTs]

Unigene Representative Sequence: NM_001178078

18/25 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 25):

ENST00000300134(uc009zpe.3 uc001sna.3 uc009zpf.3 uc010srb.2 uc010src.2 uc010srd.2 uc009zpg.3)

ENST00000555222 ENST00000538913 ENST00000557563 ENST00000543873 ENST00000556155

ENST00000537215 ENST00000454075 ENST00000554764 ENST00000555318 ENST00000554202

ENST00000555375 ENST00000553533 ENST00000557781 ENST00000555641 ENST00000555849

ENST00000556259 ENST00000553499

miRNA Products:		OriGene 3'-UTR Clone: STAT6 Browse OriGene MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat STAT6
		8/18 QIAGEN miScript miRNA Assays for microRNAs that regulate STAT6 (see all 18):
		hsa-miR-3673 hsa-let-7a-2* hsa-miR-144 hsa-miR-649 hsa-let-7g* hsa-miR-651 hsa-miR-18b* hsa-miR-3163

		SwitchGear 3'UTR luciferase reporter plasmid: STAT6 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for STAT6 (see all 7) OriGene shRNA RFP: STAT6 OriGene siRNA: STAT6
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat STAT6
		Sirion Biotech Custom design and validation of potent shRNA sequences against STAT6

Clone Products:		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for STAT6 (see all 7) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for STAT6 (see all 5) OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector (see all 5): STAT6 (NM_003153)
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for STAT6
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat STAT6

Primer Products:		OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for STAT6 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay in human, mouse, rat STAT6
		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat STAT6
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat STAT6

Additional cDNA sequence:

AB103088.1 AB103089.1 AK290431.1 AK291044.1 AK298721.1 AK299094.1 AK308751.1 AK312471.1

AK316142.1 AK316236.1 BC004973.1 BC005823.2 BC075852.1 BT007380.1 NR_033659.1 U16031.1

24/29 DOTS entries (see all 29):

DT.97767371 DT.100797695 DT.448512 DT.433641 DT.95360334 DT.92405869 DT.97767424 DT.92010490

DT.100797683 DT.121175368 DT.92455115 DT.95337090 DT.121175338 DT.92455144 DT.121175323 DT.92455129

DT.95337051 DT.91825079 DT.92455137 DT.100728718 DT.40227500 DT.100033662 DT.91711641 DT.91765782

24/444 AceView cDNA sequences (see all 444):

AI829821 BM993461 BM991084 AA836835 BQ059735 AL583094 AI092443 NM_003153

BU543479 AI344587 BU527455 BX349303 BG327083 BE391052 BE302269 AW005538

AI560607 AI921759 CR606877 CA390764 CK430393 BU177016 AI311850 AI538610

GeneLoc Exon Structure

5/15 Alternative Splicing Database (ASD) splice patterns (SP) for STAT6 (see all 15) About this scheme

ExUns:	1	^	2a	·	2b	·	2c	·	2d	^	3a	·	3b	·	3c	·	3d	^	4a	·	4b	^	5a	·	5b	·	5c	^	6a	·	6b	^	7a	·	7b	^	8	^	9a	·	9b	·	9c	^	10	^	11a	·	11b	^	12	^
SP1:									-		-		-		-		-																		-						-		-
SP2:
SP3:
SP4:									-		-		-		-		-						-		-		-								-
SP5:																																			-

ExUns:	13a	·	13b	^	14a	·	14b	^	15a	·	15b	^	16	^	17	^	18a	·	18b	^	19a	·	19b	^	20a	·	20b	^	21	^	22	^	23	^	24	^	25	^	26
SP1:			-		-								-										-		-
SP2:			-		-
SP3:
SP4:
SP5:

ECgene alternative splicing isoforms for STAT6

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

STAT6 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TGGCCCTCCA

About this image

STAT6 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Limb

Limb Bud

Limb Bud Mesenchyme Cells

Mesoderm

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See STAT6 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for STAT6

SOURCE GeneReport for Unigene cluster: Hs.524518

SABiosciences Expression via Pathway-Focused PCR Arrays including STAT6 (see all 10):

Fibrosis in human mouse rat

Notch Signaling Pathway in human mouse rat

JAK / STAT Signaling Pathway in human mouse rat

Innate & Adaptive Immune Responses in human mouse rat

Th17 Response in human mouse rat

Primer Products:		OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for STAT6 Browse OriGene validated miRNA SYBR primer pairs
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for STAT6 gene from 4/13 species (see all 13) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Stat6^{1 , 5}	signal transducer and activator of transcription 6^{1, 5}	85.78(n)¹ 86.62(a)¹		10 (74.59 cM)⁵ 20852¹ NM_009284.2¹ NP_033310.2¹ 127642986⁵
chicken (Gallus gallus)	Aves	LOC100859196¹	signal transducer and transcription activator 6-like less	78.81(n) 83(a)		100859196 XM_003643566.1 XP_003643614.1
lizard (Anolis carolinensis)	Reptilia	STAT6⁶	--	58(a)	1 ↔ 1	GL343212.1(2609909-2640760)
zebrafish (Danio rerio)	Actinopterygii	stat6¹	signal transducer and activator of transcription 6, interleukin-4 induced less	51.56(n) 41.36(a)		337413 NM_001130590.1 NP_001124062.1

ENSEMBL Gene Tree for STAT6 (if available)
TreeFam Gene Tree for STAT6 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for STAT6 gene

STAT5B² STAT1² STAT4² STAT2² STAT3² STAT5A²

5 SIMAP similar genes for STAT6 using alignment to 13 protein entries: STAT6_HUMAN (see all proteins):

STAT6B STAT3 STAT4 STAT5A STAT5B

STAT6 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 12 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs703817^1,2	C,F,A,H	--	57489828(-)	`GGAGGG/AGTCTG`	6	--	ut3¹ nc-transcript-variantese³		30		MN NS EA NA WA	3148
rs184522309^1,2		--	57489835(+)	`CTCCTA/GTGCTC`	6	--	ut3¹ nc-transcript-variant		0	--	--	--	--
rs187752738^1,2		--	57489908(+)	`CCTGGC/TCTCTA`	6	--	ut3¹ nc-transcript-variant		0	--	--	--	--
rs192909998^1,2		--	57489916(+)	`CTAGTA/GTAAAT`	6	--	ut3¹ nc-transcript-variant		0	--	--	--	--
rs75089968^1,2		--	57489969(+)	`GAATGG/AGCGGA`	6	--	ut3¹ nc-transcript-variant		1		WA	118
rs146173081^1,2		--	57490043(+)	`TCAGAG/TAGCTC`	6	--	ut3¹ nc-transcript-variant		0	--	--	--	--
rs184280062^1,2		--	57490056(+)	`TATGTC/GTGTGT`	6	--	ut3¹ nc-transcript-variant		0	--	--	--	--
rs324015^1,2	C,F,A,H	--	57490100(-)	`GACACG/ACCCCA`	6	--	ut3¹ nc-transcript-variantese³		35		MN NS EA NA WA CSA	3384
rs12721591^1,2	C,F	--	57490158(-)	`TATCAT/CTCCCC`	6	--	ut3¹ nc-transcript-variantese³		2		--	108
rs11834183^1,2	H	--	57490218(+)	`CTTTTC/GCTCCT`	6	--	ut3¹ nc-transcript-variantese³ trp³		0	--	--	--	--

HapMap Linkage Disequilibrium report for STAT6 (57489187 - 57525922 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for STAT6: --
Human Gene Mutation Database (HGMD): STAT6

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

STAT6 for disorders           About GeneDecksing

OMIM gene information: 601512    OMIM disorders: --

20/67 diseases for STAT6 (see all 67):    About MalaCards

diffuse large b-cell lymphoma severe combined immunodeficiency b-cell lymphomas allergic rhinitis

combined immunodeficiency food allergy inflammatory bowel disease urinary schistosomiasis

chronic obstructive pulmonary disease ischemic heart disease systemic lupus erythematosus eosinophilic esophagitis

lupus erythematosus graves' disease atopic dermatitis rhinitis

schistosomiasis acute lymphoblastic leukemia rheumatoid arthritis chronic lymphocytic leukemia

4 diseases from the University of Copenhagen DISEASES database for STAT6:

Asthma Eosinophilia Hypersensitivity reaction type I disease Atopic dermatitis

10/41 Novoseek disease relationships for STAT6 gene (see all 41) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
asthma allergic	61.9	8	11295643 (2), 19247692 (1), 15235025 (1), 12759487 (1) (see all 6)
asthma	59.7	32	15637551 (3), 19175798 (2), 11692112 (2), 9768594 (2) (see all 19)
atopy	51.7	5	11678849 (1), 15105161 (1), 11069563 (1), 11912010 (1)
severe combined immunodeficiency, x-linked	45.4	2	8557662 (1)
inflammation	45.3	11	15297269 (1), 19175798 (1), 18691065 (1), 19494273 (1) (see all 10)
allergy	40	6	15080810 (2), 18154619 (1), 15536416 (1), 10353570 (1) (see all 5)
airways disease	36.3	2	11839568 (2)
dermatitis atopic	33.7	2	11912010 (1), 12759487 (1)
lymphoma b-cell	32.6	5	19423726 (2), 18401415 (1), 17210636 (1), 15044251 (1)
hodgkin disease	28	3	17652621 (1), 19440213 (1), 15044251 (1)

Genetic Association Database (GAD): STAT6
Human Genome Epidemiology (HuGE) Navigator: STAT6 (50 documents)

Export disorders for STAT6 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for STAT6 gene, integrated from 9 sources (see all 528):
(articles sorted by number of sources associating them with STAT6)

Utopia: connect your pdf to the dynamic
world of online information

An interleukin-4-induced transcription factor: IL-4 Stat. (PubMed id 8085155)^{1, 2, 3} Hou J....McKnight S.L. (1994)
Linkage and association studies of STAT6 gene polymorphisms and allergic diseases. (PubMed id 12759487)^{1, 4, 9} Tamura K....Morikawa A. (2003)
Structure of the NCoA-1/SRC-1 PAS-B domain bound to the LXXLL motif of the STAT6 transactivation domain. (PubMed id 14757047)^{1, 2, 9} Razeto A....Becker S. (2004)
An LXXLL motif in the transactivation domain of STAT6 mediates recruitment of NCoA-1/SRC-1. (PubMed id 12138096)^{1, 2, 9} Litterst C.M. and Pfitzner E. (2002)
Association analysis of common variants of STAT6, GATA3, and STAT4 to asthma and high serum IgE phenotypes. (PubMed id 15637551)^{1, 4, 9} Pykalainen M....Lahesmaa R. (2005)
Association of a STAT 6 haplotype with elevated serum IgE levels in a population based cohort of white adults. (PubMed id 15342695)^{1, 4, 9} Weidinger S....Illig T. (2004)
The G2964A polymorphism of the STAT6 gene in inflammatory bowel disease. (PubMed id 15888279)^{1, 4, 9} Klein W....Griga T. (2005)
Signal transducer and activator of transcription 6 gene G2964A polymorphism and inflammatory bowel disease. (PubMed id 12605697)^{1, 4, 9} Xia B....Pena A.S. (2003)
STAT6 as an asthma candidate gene: polymorphism-screening, association and haplotype analysis in a Caucasian sib-pair study. (PubMed id 11912176)^{1, 4, 9} Duetsch G....Wjst M. (2002)
Polymorphism of the interleukin-4, interleukin-13, and signal transducer and activator of transcription 6 genes in Indonesian children with minimal change nephrotic syndrome. (PubMed id 15687724)^{1, 4, 9} Acharya B....Gotoh A. (2005)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 6778	HGNC: 11368	AceView: STAT6	Ensembl:ENSG00000166888	euGenes: HUgn6778
ECgene: STAT6	Kegg: 6778	H-InvDB: STAT6

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for STAT6	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for STAT6	Genetics and Cytogenetics in Oncology and Haematology
SeattleSNPs	http://pga.gs.washington.edu/data/stat6/

Intellectual Property for STAT6 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for STAT6 gene:
Search GeneIP for patents involving STAT6

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
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Glioblastoma Multiforme
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STAT6 Gene

signal transducer and activator of transcription 6, interleukin-4...

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