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Aliases for STARD7-AS1 Gene

Subcategory (RNA class) for STARD7-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STARD7-AS1 Gene

  • STARD7 Antisense RNA 1 2 3 5

External Ids for STARD7-AS1 Gene

Previous GeneCards Identifiers for STARD7-AS1 Gene

  • GC02P096877

Summaries for STARD7-AS1 Gene

GeneCards Summary for STARD7-AS1 Gene

STARD7-AS1 (STARD7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STARD7-AS1 Gene

Genomics for STARD7-AS1 Gene

Regulatory Elements for STARD7-AS1 Gene

Enhancers for STARD7-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F096636 0.4 ENCODE 19.9 +429.3 429292 2.8 CREB3L1 MLX DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC MEF2D STARD7-AS1 TRIM43CP ENSG00000236847 ENSG00000237837 ANKRD36B CIAO1 FER1L5 GC02P096595
GH02F096233 0.8 Ensembl ENCODE 13.7 +25.8 25848 1.5 HDGF CTCF MTA2 NRF1 TRIM22 TBX21 RAD21 IKZF1 NBN ZNF143 STARD7 STARD7-AS1 CIAO1 TMEM127 ADRA2B DUSP2 ASTL ITPRIPL1 NCAPH LOC105373495
GH02F096236 0.5 ENCODE 13.7 +28.6 28612 0.8 TFAP4 NFIA SAP130 NFRKB MLLT1 ZBTB33 MGA CIAO1 STARD7 STARD7-AS1 TMEM127 ADRA2B ASTL DUSP2 ITPRIPL1 NCAPH LOC105373495
GH02F096249 0.7 Ensembl ENCODE 13 +43.6 43644 5.7 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A SLC30A9 ZNF766 SP5 REST ITPRIPL1 STARD7 STARD7-AS1 NCAPH ASTL DUSP2 LOC105373495 CIAO1 GPAT2P1 GC02M096251
GH02F096255 2 VISTA FANTOM5 Ensembl ENCODE 13 +50.9 50858 7.2 PKNOX1 ARNT MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 DUSP2 CIAO1 STARD7 STARD7-AS1 NCAPH ASTL ITPRIPL1 LOC105373495 SNRNP200 TMEM127
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around STARD7-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for STARD7-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000014680 -416 3201 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for STARD7-AS1 Gene

Chromosome:
2
Start:
96,208,416 bp from pter
End:
96,242,623 bp from pter
Size:
34,208 bases
Orientation:
Plus strand

Genomic View for STARD7-AS1 Gene

Genes around STARD7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STARD7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STARD7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STARD7-AS1 Gene

Proteins for STARD7-AS1 Gene

Post-translational modifications for STARD7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STARD7-AS1 Gene

Domains & Families for STARD7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STARD7-AS1 Gene

Function for STARD7-AS1 Gene

Phenotypes for STARD7-AS1 Gene

GenomeRNAi human phenotypes for STARD7-AS1:
genes like me logo Genes that share phenotypes with STARD7-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STARD7-AS1 Gene

Localization for STARD7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STARD7-AS1 Gene

Pathways & Interactions for STARD7-AS1 Gene

SuperPathways for STARD7-AS1 Gene

No Data Available

Interacting Proteins for STARD7-AS1 Gene

Gene Ontology (GO) - Biological Process for STARD7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STARD7-AS1 Gene

Transcripts for STARD7-AS1 Gene

mRNA/cDNA for STARD7-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for STARD7-AS1 Gene

No ASD Table

Relevant External Links for STARD7-AS1 Gene

GeneLoc Exon Structure for
STARD7-AS1
ECgene alternative splicing isoforms for
STARD7-AS1

Expression for STARD7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for STARD7-AS1 Gene

genes like me logo Genes that share expression patterns with STARD7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for STARD7-AS1 Gene

Orthologs for STARD7-AS1 Gene

Evolution for STARD7-AS1 Gene

ENSEMBL:
Gene Tree for STARD7-AS1 (if available)
TreeFam:
Gene Tree for STARD7-AS1 (if available)

No data available for Orthologs for STARD7-AS1 Gene

Paralogs for STARD7-AS1 Gene

No data available for Paralogs for STARD7-AS1 Gene

Variants for STARD7-AS1 Gene

Sequence variations from dbSNP and Humsavar for STARD7-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10209653 -- 96,233,803(+) TTTCA(A/G)TCTAT intron-variant
rs10445975 -- 96,225,007(+) atctc(C/T)tattt intron-variant
rs111293594 -- 96,208,958(+) CATGC(A/G/T)CGGAG nc-transcript-variant, upstream-variant-2KB
rs111297939 -- 96,232,389(+) CACAT(C/T)GCTTT intron-variant
rs111305197 -- 96,223,759(+) GGTTT(C/G)TGCAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STARD7-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv607e201 CNV deletion 23290073
esv3425717 CNV duplication 20981092
esv3591652 OTHER inversion 21293372
esv5003 OTHER complex 18987735
nsv1135873 CNV deletion 24896259
nsv834305 CNV gain 17160897
nsv963665 CNV duplication 23825009

Relevant External Links for STARD7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STARD7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STARD7-AS1 Gene

Disorders for STARD7-AS1 Gene

Relevant External Links for STARD7-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STARD7-AS1

No disorders were found for STARD7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STARD7-AS1 Gene

Publications for STARD7-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for STARD7-AS1 Gene

Sources for STARD7-AS1 Gene

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