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Aliases for STARD4-AS1 Gene

Subcategory (RNA class) for STARD4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STARD4-AS1 Gene

  • STARD4 Antisense RNA 1 2 3 5
  • STARD4 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTC-426B10.1 3

External Ids for STARD4-AS1 Gene

Previous GeneCards Identifiers for STARD4-AS1 Gene

  • GC05P110849

Summaries for STARD4-AS1 Gene

GeneCards Summary for STARD4-AS1 Gene

STARD4-AS1 (STARD4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STARD4-AS1 Gene

Genomics for STARD4-AS1 Gene

Regulatory Elements for STARD4-AS1 Gene

Enhancers for STARD4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F111753 1.2 ENCODE 9.7 +244.3 244253 5.5 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF416 ZNF548 WDR36 RPS3AP21 SNORA13 STARD4-AS1 BCLAF1P1 RN7SKP57 LOC105379122
GH05F111091 1.2 ENCODE 9.7 -419.4 -419372 2.6 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 WDR36 TSLP RPS3AP21 ENSG00000249318 ENSG00000253613 LOC100131280 NREP-AS1 ENSG00000248428 BCLAF1P1 STARD4-AS1
GH05F111510 1.5 FANTOM5 ENCODE 0.8 +0.2 159 4.3 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A ZNF2 YY1 SLC30A9 STARD4 BCLAF1P1 WDR36 STARD4-AS1
GH05F111494 0.9 FANTOM5 ENCODE 0.3 -17.3 -17333 1.3 ZNF664 PKNOX1 ZNF680 MTA2 POLR2A EBF1 ZNF518A SUPT5H STARD4 CAMK4 WDR36 STARD4-AS1 GC05P111374
GH05F111453 1.3 FANTOM5 Ensembl ENCODE 0.2 -58.1 -58135 1.9 CTCF PKNOX1 FEZF1 RAD21 ZNF366 TCF7L2 ZNF362 SP3 GFI1B OVOL3 ENSG00000251187 EPB41L4A WDR36 STARD4-AS1 GC05P111374
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STARD4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for STARD4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001287405 -626 4001 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A ZNF2 YY1 SLC30A9

Genomic Location for STARD4-AS1 Gene

Chromosome:
5
Start:
111,512,226 bp from pter
End:
111,739,726 bp from pter
Size:
227,501 bases
Orientation:
Plus strand

Genomic View for STARD4-AS1 Gene

Genes around STARD4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STARD4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STARD4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STARD4-AS1 Gene

Proteins for STARD4-AS1 Gene

Post-translational modifications for STARD4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STARD4-AS1 Gene

Domains & Families for STARD4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STARD4-AS1 Gene

Function for STARD4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STARD4-AS1 Gene

Localization for STARD4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STARD4-AS1 Gene

Pathways & Interactions for STARD4-AS1 Gene

SuperPathways for STARD4-AS1 Gene

No Data Available

Interacting Proteins for STARD4-AS1 Gene

Gene Ontology (GO) - Biological Process for STARD4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STARD4-AS1 Gene

Transcripts for STARD4-AS1 Gene

mRNA/cDNA for STARD4-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STARD4-AS1 Gene

No ASD Table

Relevant External Links for STARD4-AS1 Gene

GeneLoc Exon Structure for
STARD4-AS1
ECgene alternative splicing isoforms for
STARD4-AS1

Expression for STARD4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for STARD4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for STARD4-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x9.7) and Brain - Cerebellum (x8.9).
genes like me logo Genes that share expression patterns with STARD4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for STARD4-AS1 Gene

Orthologs for STARD4-AS1 Gene

Evolution for STARD4-AS1 Gene

ENSEMBL:
Gene Tree for STARD4-AS1 (if available)
TreeFam:
Gene Tree for STARD4-AS1 (if available)

No data available for Orthologs for STARD4-AS1 Gene

Paralogs for STARD4-AS1 Gene

No data available for Paralogs for STARD4-AS1 Gene

Variants for STARD4-AS1 Gene

Sequence variations from dbSNP and Humsavar for STARD4-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10035936 -- 111,569,648(+) agctg(A/G)ttatt intron-variant
rs10036739 -- 111,628,797(+) agata(G/T)gccac intron-variant
rs10037216 -- 111,580,232(+) ctcta(A/T)acttt intron-variant
rs10037266 -- 111,634,686(+) ACTTA(C/T)AAAAA intron-variant
rs10037838 -- 111,619,923(+) ATCTG(A/C)AGATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STARD4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2095688 CNV deletion 18987734
esv22530 CNV loss 19812545
esv2422075 CNV deletion 20811451
esv2730593 CNV deletion 23290073
esv2760973 CNV loss 21179565
esv3385750 CNV insertion 20981092
esv3606276 CNV loss 21293372
esv3606277 CNV gain 21293372
nsv327171 CNV deletion 16902084
nsv328351 CNV deletion 16902084
nsv441961 CNV loss 18776908
nsv462385 CNV loss 19166990
nsv4958 CNV insertion 18451855
nsv507283 OTHER sequence alteration 20534489
nsv514318 CNV loss 21397061
nsv517462 CNV loss 19592680
nsv518727 CNV gain 19592680
nsv520213 CNV loss 19592680
nsv599366 CNV loss 21841781
nsv599367 CNV gain 21841781
nsv818376 CNV loss 17921354
nsv830449 CNV gain+loss 17160897
nsv968232 CNV duplication 23825009
nsv968975 CNV duplication 23825009

Relevant External Links for STARD4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STARD4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STARD4-AS1 Gene

Disorders for STARD4-AS1 Gene

Relevant External Links for STARD4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STARD4-AS1

No disorders were found for STARD4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STARD4-AS1 Gene

Publications for STARD4-AS1 Gene

  1. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry J.R. … Ong K.K. (Nature 2014) 3 64
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64

Products for STARD4-AS1 Gene

Sources for STARD4-AS1 Gene

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