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Aliases for STARD4-AS1 Gene

Subcategory (RNA class) for STARD4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STARD4-AS1 Gene

  • STARD4 Antisense RNA 1 2 3 5
  • STARD4 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTC-426B10.1 3

External Ids for STARD4-AS1 Gene

Previous GeneCards Identifiers for STARD4-AS1 Gene

  • GC05P110849

Summaries for STARD4-AS1 Gene

GeneCards Summary for STARD4-AS1 Gene

STARD4-AS1 (STARD4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STARD4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STARD4-AS1 Gene

Genomics for STARD4-AS1 Gene

GeneHancer (GH) Regulatory Elements for STARD4-AS1 Gene

Promoters and enhancers for STARD4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I111510 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 550.8 +0.1 133 4.3 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A ZNF2 IRF4 YY1 SLC30A9 STARD4 STARD4-AS1 WDR36 GC05M111479
GH05I112160 Promoter/Enhancer 1.6 Ensembl ENCODE 13.9 +649.4 649355 2.8 CLOCK DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 PPARGC1A EPB41L4A-AS1 GC05P112172 GC05M112153 SNORA13 PIR48450 RPS3AP21 STARD4-AS1 DCP2 ENSG00000272389 EPB41L4A
GH05I111091 Promoter/Enhancer 1.6 Ensembl ENCODE 9.7 -419.4 -419372 2.6 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 WDR36 ENSG00000253613 RPS3AP21 TSLP SLC25A46 TMEM232 BCLAF1P1 STARD4-AS1 GC05P111128
GH05I111697 Enhancer 0.8 ENCODE dbSUPER 10.2 +185.2 185183 0.1 ZNF174 ZNF680 NFIB PRDM6 NFIC ZNF776 LCORL ZNF544 BCL6B ZSCAN5C STARD4-AS1 EPB41L4A-AS2 RN7SKP57 GC05M111608 NREP
GH05I111261 Enhancer 0.4 dbSUPER 10.2 -250.0 -249981 1.6 ZSCAN26 POLR2A TSLP STARD4-AS1 ENSG00000249318 GC05P111246 CAMK4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STARD4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for STARD4-AS1 Gene

Genomic Locations for STARD4-AS1 Gene
chr5:111,512,226-111,739,726
(GRCh38/hg38)
Size:
227,501 bases
Orientation:
Plus strand
chr5:110,847,924-111,075,423
(GRCh37/hg19)

Genomic View for STARD4-AS1 Gene

Genes around STARD4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STARD4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STARD4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STARD4-AS1 Gene

Proteins for STARD4-AS1 Gene

Post-translational modifications for STARD4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STARD4-AS1 Gene

Domains & Families for STARD4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STARD4-AS1 Gene

Function for STARD4-AS1 Gene

Phenotypes From GWAS Catalog for STARD4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STARD4-AS1 Gene

Localization for STARD4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STARD4-AS1 Gene

Pathways & Interactions for STARD4-AS1 Gene

SuperPathways for STARD4-AS1 Gene

No Data Available

Interacting Proteins for STARD4-AS1 Gene

Gene Ontology (GO) - Biological Process for STARD4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STARD4-AS1 Gene

Drugs & Compounds for STARD4-AS1 Gene

No Compound Related Data Available

Transcripts for STARD4-AS1 Gene

mRNA/cDNA for STARD4-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STARD4-AS1 Gene

No ASD Table

Relevant External Links for STARD4-AS1 Gene

GeneLoc Exon Structure for
STARD4-AS1
ECgene alternative splicing isoforms for
STARD4-AS1

Expression for STARD4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STARD4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for STARD4-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x9.7) and Brain - Cerebellum (x8.9).
genes like me logo Genes that share expression patterns with STARD4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STARD4-AS1 Gene

Orthologs for STARD4-AS1 Gene

Evolution for STARD4-AS1 Gene

ENSEMBL:
Gene Tree for STARD4-AS1 (if available)
TreeFam:
Gene Tree for STARD4-AS1 (if available)

No data available for Orthologs for STARD4-AS1 Gene

Paralogs for STARD4-AS1 Gene

No data available for Paralogs for STARD4-AS1 Gene

Variants for STARD4-AS1 Gene

Sequence variations from dbSNP and Humsavar for STARD4-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000003206 -- 111,564,740(+) C/T intron_variant
rs1000030166 -- 111,633,934(+) C/G/T intron_variant
rs1000064319 -- 111,601,380(+) A/G intron_variant
rs1000084388 -- 111,638,538(+) C/T intron_variant
rs1000093914 -- 111,677,976(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for STARD4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2095688 CNV deletion 18987734
esv22530 CNV loss 19812545
esv2422075 CNV deletion 20811451
esv2730593 CNV deletion 23290073
esv2760973 CNV loss 21179565
esv3385750 CNV insertion 20981092
esv3606276 CNV loss 21293372
esv3606277 CNV gain 21293372
nsv327171 CNV deletion 16902084
nsv328351 CNV deletion 16902084
nsv441961 CNV loss 18776908
nsv462385 CNV loss 19166990
nsv4958 CNV insertion 18451855
nsv507283 OTHER sequence alteration 20534489
nsv514318 CNV loss 21397061
nsv517462 CNV loss 19592680
nsv518727 CNV gain 19592680
nsv520213 CNV loss 19592680
nsv599366 CNV loss 21841781
nsv599367 CNV gain 21841781
nsv818376 CNV loss 17921354
nsv830449 CNV gain+loss 17160897
nsv968232 CNV duplication 23825009
nsv968975 CNV duplication 23825009

Additional Variant Information for STARD4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STARD4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STARD4-AS1 Gene

Disorders for STARD4-AS1 Gene

Additional Disease Information for STARD4-AS1

No disorders were found for STARD4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STARD4-AS1 Gene

Publications for STARD4-AS1 Gene

  1. Identification and evaluation of lncRNA and mRNA integrative modules in human peripheral blood mononuclear cells. (PMID: 28621149) Mo XB … Lei SF (Epigenomics 2017) 2 3 58
  2. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry JR … Ong KK (Nature 2014) 3 58
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58

Products for STARD4-AS1 Gene

Sources for STARD4-AS1 Gene

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