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Aliases for STARD4-AS1 Gene

Subcategory (RNA class) for STARD4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for STARD4-AS1 Gene

  • STARD4 Antisense RNA 1 2 3 5
  • STARD4 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTC-426B10.1 3

External Ids for STARD4-AS1 Gene

Previous GeneCards Identifiers for STARD4-AS1 Gene

  • GC05P110849

Summaries for STARD4-AS1 Gene

GeneCards Summary for STARD4-AS1 Gene

STARD4-AS1 (STARD4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STARD4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STARD4-AS1 Gene

Genomics for STARD4-AS1 Gene

Regulatory Elements for STARD4-AS1 Gene

Enhancers for STARD4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H111091 1.2 ENCODE 9.7 -419.4 -419372 2.6 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 NFYC WDR36 RPS3AP21 TSLP ENSG00000249318 BCLAF1P1 ENSG00000253613 LOC100131280 NREP-AS1 SLC25A46 TMEM232
GH05H111697 0.9 ENCODE dbSUPER 10.2 +185.2 185183 0.1 ZNF174 ZNF680 NFIB ZNF776 NFIC LCORL PRDM6 ZNF544 BCL6B ZSCAN5C STARD4-AS1 EPB41L4A-AS2 RN7SKP57 GC05M111608
GH05H111261 0.4 dbSUPER 10.2 -250.0 -249981 1.6 ZSCAN26 POLR2A TSLP STARD4-AS1 ENSG00000249318 GC05P111246
GH05H111494 1 FANTOM5 ENCODE 0.4 -17.3 -17333 1.3 PKNOX1 ZNF687 ZNF680 NFIB NR2F1 BACH1 EBF1 ZNF518A ZNF592 ZNF664 STARD4 CAMK4 WDR36 STARD4-AS1 GC05P111374
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STARD4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for STARD4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000185214 -326 3401 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF143 FOS

Genomic Locations for STARD4-AS1 Gene

Genomic Locations for STARD4-AS1 Gene
227,501 bases
Plus strand

Genomic View for STARD4-AS1 Gene

Genes around STARD4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STARD4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STARD4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STARD4-AS1 Gene

Proteins for STARD4-AS1 Gene

Post-translational modifications for STARD4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STARD4-AS1 Gene

Domains & Families for STARD4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STARD4-AS1 Gene

Function for STARD4-AS1 Gene

Phenotypes From GWAS Catalog for STARD4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STARD4-AS1 Gene

Localization for STARD4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STARD4-AS1 Gene

Pathways & Interactions for STARD4-AS1 Gene

SuperPathways for STARD4-AS1 Gene

No Data Available

Interacting Proteins for STARD4-AS1 Gene

Gene Ontology (GO) - Biological Process for STARD4-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for STARD4-AS1 Gene

Drugs & Compounds for STARD4-AS1 Gene

No Compound Related Data Available

Transcripts for STARD4-AS1 Gene

mRNA/cDNA for STARD4-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STARD4-AS1 Gene

No ASD Table

Relevant External Links for STARD4-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for STARD4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STARD4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for STARD4-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x9.7) and Brain - Cerebellum (x8.9).
genes like me logo Genes that share expression patterns with STARD4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STARD4-AS1 Gene

Orthologs for STARD4-AS1 Gene

Evolution for STARD4-AS1 Gene

Gene Tree for STARD4-AS1 (if available)
Gene Tree for STARD4-AS1 (if available)

No data available for Orthologs for STARD4-AS1 Gene

Paralogs for STARD4-AS1 Gene

No data available for Paralogs for STARD4-AS1 Gene

Variants for STARD4-AS1 Gene

Sequence variations from dbSNP and Humsavar for STARD4-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000003206 -- 111,564,740(+) CTCAA(C/T)AATAC intron-variant
rs1000030166 -- 111,633,934(+) GCAAA(C/G/T)AGGAA intron-variant
rs1000064319 -- 111,601,380(+) GTGCT(A/G)TATCC intron-variant
rs1000084388 -- 111,638,538(+) TGCTG(C/T)TACAA intron-variant
rs1000093914 -- 111,677,976(+) CTCTT(C/G)CATTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STARD4-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv968232 CNV duplication 23825009
nsv968975 CNV duplication 23825009
nsv830449 CNV gain+loss 17160897
nsv818376 CNV loss 17921354
nsv599367 CNV gain 21841781
nsv599366 CNV loss 21841781
nsv520213 CNV loss 19592680
nsv518727 CNV gain 19592680
nsv517462 CNV loss 19592680
nsv514318 CNV loss 21397061
nsv507283 OTHER sequence alteration 20534489
nsv4958 CNV insertion 18451855
nsv462385 CNV loss 19166990
nsv441961 CNV loss 18776908
nsv328351 CNV deletion 16902084
nsv327171 CNV deletion 16902084
esv3606277 CNV gain 21293372
esv3606276 CNV loss 21293372
esv3385750 CNV insertion 20981092
esv2760973 CNV loss 21179565
esv2730593 CNV deletion 23290073
esv2422075 CNV deletion 20811451
esv22530 CNV loss 19812545
esv2095688 CNV deletion 18987734

Relevant External Links for STARD4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STARD4-AS1 Gene

Disorders for STARD4-AS1 Gene

Relevant External Links for STARD4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for STARD4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STARD4-AS1 Gene

Publications for STARD4-AS1 Gene

  1. Identification and evaluation of lncRNA and mRNA integrative modules in human peripheral blood mononuclear cells. (PMID: 28621149) Mo XB … Lei SF (Epigenomics 2017) 2 3 60
  2. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry JR … Ong KK (Nature 2014) 3 60
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 60

Products for STARD4-AS1 Gene

Sources for STARD4-AS1 Gene

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