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Aliases for STARD13-AS Gene

Subcategory (RNA class) for STARD13-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STARD13-AS Gene

  • STARD13 Antisense RNA 2 3 5
  • STARD13 Antisense RNA 2 (Non-Protein Coding) 2 3
  • STARD13 Antisense RNA 2 2
  • STARD13-AS2 3

External Ids for STARD13-AS Gene

Previous HGNC Symbols for STARD13-AS Gene

  • STARD13-AS2

Previous GeneCards Identifiers for STARD13-AS Gene

  • GC13P033853
  • GC13P033271

Summaries for STARD13-AS Gene

GeneCards Summary for STARD13-AS Gene

STARD13-AS (STARD13 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STARD13-AS Gene

Genomics for STARD13-AS Gene

Regulatory Elements for STARD13-AS Gene

Enhancers for STARD13-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F033255 0.5 Ensembl ENCODE 23.1 +81.5 81526 12.6 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 FOS SP5 MXD4 MIER2 STARD13-AS STARD13 KL LOC105370154
GH13F033247 1.4 Ensembl ENCODE 16.9 +70.7 70734 6.8 PKNOX1 MXI1 JUN MAX BACH1 SIN3A ZNF316 POLR2A SCRT2 FOS STARD13-AS STARD13 KL LOC105370154
GH13F033270 1.1 FANTOM5 Ensembl ENCODE 12.7 +98.2 98180 16.6 PKNOX1 ZNF133 ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF2 YY1 SLC30A9 N4BP2L2 STARD13-AS RFC3 KL STARD13 LOC105370154
GH13F033234 0.2 ENCODE 11.5 +53.4 53358 0.2 STARD13-AS STARD13 LOC105370154
GH13F033233 1.1 Ensembl ENCODE 11.5 +55.7 55731 4.5 SOX13 SAP130 JUN SIN3A RAD21 TEAD3 YY1 JUND ATF3 ZBTB33 STARD13 STARD13-AS LOC105370154
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around STARD13-AS on UCSC Golden Path with GeneCards custom track

Genomic Location for STARD13-AS Gene

Chromosome:
13
Start:
33,180,401 bp from pter
End:
33,281,584 bp from pter
Size:
101,184 bases
Orientation:
Plus strand

Genomic View for STARD13-AS Gene

Genes around STARD13-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STARD13-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STARD13-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STARD13-AS Gene

Proteins for STARD13-AS Gene

Post-translational modifications for STARD13-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for STARD13-AS Gene

Domains & Families for STARD13-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STARD13-AS Gene

Function for STARD13-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STARD13-AS Gene

Localization for STARD13-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STARD13-AS Gene

Pathways & Interactions for STARD13-AS Gene

SuperPathways for STARD13-AS Gene

No Data Available

Interacting Proteins for STARD13-AS Gene

Gene Ontology (GO) - Biological Process for STARD13-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STARD13-AS Gene

Transcripts for STARD13-AS Gene

mRNA/cDNA for STARD13-AS Gene

(2) Additional mRNA sequences :
(48) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STARD13-AS Gene

STARD13 antisense RNA:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for STARD13-AS Gene

No ASD Table

Relevant External Links for STARD13-AS Gene

GeneLoc Exon Structure for
STARD13-AS
ECgene alternative splicing isoforms for
STARD13-AS

Expression for STARD13-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for STARD13-AS Gene

mRNA differential expression in normal tissues according to GTEx for STARD13-AS Gene

This gene is overexpressed in Testis (x25.0).

SOURCE GeneReport for Unigene cluster for STARD13-AS Gene:

Hs.662433
genes like me logo Genes that share expression patterns with STARD13-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for STARD13-AS Gene

Orthologs for STARD13-AS Gene

Evolution for STARD13-AS Gene

ENSEMBL:
Gene Tree for STARD13-AS (if available)
TreeFam:
Gene Tree for STARD13-AS (if available)

No data available for Orthologs for STARD13-AS Gene

Paralogs for STARD13-AS Gene

No data available for Paralogs for STARD13-AS Gene

Variants for STARD13-AS Gene

Sequence variations from dbSNP and Humsavar for STARD13-AS Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1059180 -- 33,281,261(+) CTTAT(C/T)CTACT intron-variant, nc-transcript-variant
rs10665326 -- 33,277,051(+) TGAAA(-/AG)AAAAA intron-variant, upstream-variant-2KB
rs10665585 -- 33,281,441(+) TGTGT(-/GT/GTGT)ATGTA intron-variant, downstream-variant-500B
rs111461442 -- 33,280,227(+) GCAAA(C/T)TCCCA intron-variant
rs111533216 -- 33,277,053(+) GAAAA(A/G)AAAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for STARD13-AS Gene

Variant ID Type Subtype PubMed ID
nsv519343 CNV loss 19592680

Relevant External Links for STARD13-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STARD13-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STARD13-AS Gene

Disorders for STARD13-AS Gene

Relevant External Links for STARD13-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STARD13-AS

No disorders were found for STARD13-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STARD13-AS Gene

Publications for STARD13-AS Gene

No publications were found for STARD13-AS Gene.

Products for STARD13-AS Gene

Sources for STARD13-AS Gene

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