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Aliases for STARD13-AS Gene

Subcategory (RNA class) for STARD13-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STARD13-AS Gene

  • STARD13 Antisense RNA 2 3 5
  • STARD13 Antisense RNA 2 (Non-Protein Coding) 2 3
  • STARD13 Antisense RNA 2 2
  • STARD13-AS2 3

External Ids for STARD13-AS Gene

Previous HGNC Symbols for STARD13-AS Gene

  • STARD13-AS2

Previous GeneCards Identifiers for STARD13-AS Gene

  • GC13P033853
  • GC13P033271

Summaries for STARD13-AS Gene

GeneCards Summary for STARD13-AS Gene

STARD13-AS (STARD13 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STARD13-AS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STARD13-AS Gene

Genomics for STARD13-AS Gene

Regulatory Elements for STARD13-AS Gene

Enhancers for STARD13-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H033255 1.5 Ensembl ENCODE dbSUPER 23.1 +81.5 81526 12 FOXA2 ATF1 MLX ARID4B DMAP1 YY1 TCF12 FOS SP5 MXD4 STARD13-AS STARD13 KL LINC02344
GH13H033270 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.7 +98.2 98180 16 FOXA2 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 GLIS2 N4BP2L2 STARD13-AS RFC3 KL STARD13 LINC02344
GH13H033247 1.2 Ensembl ENCODE dbSUPER 16.9 +70.7 70734 6 PKNOX1 JUN MAX DPF2 BATF JUND POLR2A IKZF1 FOS ZNF24 STARD13-AS STARD13 KL LINC02344
GH13H033202 1.5 FANTOM5 ENCODE dbSUPER 11.2 +25.5 25463 7 HDGF PKNOX1 FOXA2 TBL1XR1 SIN3A RAD21 RARA HSF1 SCRT2 ZNF143 STARD13 STARD13-AS KL N4BP2L2 LINC02344
GH13H033226 1.4 Ensembl ENCODE dbSUPER 11.5 +49.1 49063 5 ELF3 FOXA2 MLX THRB ZSCAN9 RAD21 RARA YY1 ZNF143 RCOR1 STARD13 STARD13-AS KL LINC02344
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STARD13-AS on UCSC Golden Path with GeneCards custom track

Genomic Location for STARD13-AS Gene

Chromosome:
13
Start:
33,180,401 bp from pter
End:
33,281,584 bp from pter
Size:
101,184 bases
Orientation:
Plus strand

Genomic View for STARD13-AS Gene

Genes around STARD13-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STARD13-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STARD13-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STARD13-AS Gene

Proteins for STARD13-AS Gene

Post-translational modifications for STARD13-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for STARD13-AS Gene

Domains & Families for STARD13-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STARD13-AS Gene

Function for STARD13-AS Gene

Phenotypes From GWAS Catalog for STARD13-AS Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for STARD13-AS
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STARD13-AS Gene

Localization for STARD13-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STARD13-AS Gene

Pathways & Interactions for STARD13-AS Gene

SuperPathways for STARD13-AS Gene

No Data Available

Interacting Proteins for STARD13-AS Gene

Gene Ontology (GO) - Biological Process for STARD13-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STARD13-AS Gene

Drugs & Compounds for STARD13-AS Gene

No Compound Related Data Available

Transcripts for STARD13-AS Gene

mRNA/cDNA for STARD13-AS Gene

(2) Additional mRNA sequences :
(48) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STARD13-AS Gene

STARD13 antisense RNA:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for STARD13-AS
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for STARD13-AS Gene

No ASD Table

Relevant External Links for STARD13-AS Gene

GeneLoc Exon Structure for
STARD13-AS
ECgene alternative splicing isoforms for
STARD13-AS

Expression for STARD13-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STARD13-AS Gene

mRNA differential expression in normal tissues according to GTEx for STARD13-AS Gene

This gene is overexpressed in Testis (x25.0).

SOURCE GeneReport for Unigene cluster for STARD13-AS Gene:

Hs.662433
genes like me logo Genes that share expression patterns with STARD13-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STARD13-AS Gene

Orthologs for STARD13-AS Gene

Evolution for STARD13-AS Gene

ENSEMBL:
Gene Tree for STARD13-AS (if available)
TreeFam:
Gene Tree for STARD13-AS (if available)

No data available for Orthologs for STARD13-AS Gene

Paralogs for STARD13-AS Gene

No data available for Paralogs for STARD13-AS Gene

Variants for STARD13-AS Gene

Sequence variations from dbSNP and Humsavar for STARD13-AS Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000265166 -- 33,275,768(+) TCAAT(C/T)ATTTG intron-variant, upstream-variant-2KB
rs1000294040 -- 33,281,802(+) GAATG(G/T)TGGTT intron-variant, downstream-variant-500B
rs1000597625 -- 33,277,189(+) TGGGC(A/T)AGGCA intron-variant, upstream-variant-2KB
rs1001889811 -- 33,279,852(+) CTTAG(A/C)AGATT intron-variant
rs1002004227 -- 33,279,599(+) CTGTG(C/T)TACTG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for STARD13-AS Gene

Variant ID Type Subtype PubMed ID
nsv519343 CNV loss 19592680

Relevant External Links for STARD13-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STARD13-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STARD13-AS Gene

Disorders for STARD13-AS Gene

Relevant External Links for STARD13-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STARD13-AS

No disorders were found for STARD13-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STARD13-AS Gene

Publications for STARD13-AS Gene

No publications were found for STARD13-AS Gene.

Products for STARD13-AS Gene

Sources for STARD13-AS Gene

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