STAP1 Gene
protein-coding GIFtS : 57
GCID: GC04 P068424
signal transducing adaptor family member 1
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Aliasesfor STAP1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Signal Transducing Adaptor Family Member 1 1 2 BCR Downstream-Signaling Protein 12 3 BRDG11 2 3 BCR Downstream Signaling 12 STAP-11 2 3 Signal-Transducing Adaptor Protein 12 Docking Protein BRDG12 3 Signal-Transducing Adaptor Protein-12 Stem Cell Adaptor Protein 12 3
Export aliases for STAP1 gene to outside databases Previous GC identifers: GC04P068108 GC04P064337
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Summariesfor STAP1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for STAP1 : The protein encoded by this gene functions as a docking protein acting downstream of Tec tyrosine kinase in B cell antigen receptor signaling. The protein is directly phosphorylated by Tec in vitro where it participates in a postive feedback loop, increasing Tec activity. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: STAP1_HUMAN, Q9ULZ2 Function : In BCR signaling, appears to function as a docking protein acting downstream of TEC and participates in apositive feedback loop by increasing the activity of TEC Gene Wiki entry for STAP1
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Genomic Viewsfor STAP1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000004.11 NC_018915.1 NT_022778.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the STAP1 gene promoter: HSF1 (long) FOXD1 STAT5A HNF-1A MEF-2A S8 HNF-1 HSF1short aMEF-2 ATF Other transcription factors Search SABiosciences Chromatin IP Primers for STAP1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat STAP1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 4q13.2 Ensembl cytogenetic band: 4q13.2 HGNC cytogenetic band: 4q13.2 STAP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04P068424: view genomic region
(about GC identifiers )
Start:
68,424,446 bp from pter
End:
68,473,055 bp from pter
Size:
48,610 bases
Orientation:
plus strand
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Proteinsfor STAP1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: STAP1_HUMAN, Q9ULZ2 (See
protein sequence )Recommended Name: Signal-transducing adaptor protein 1 Size : 295 amino acids; 34291 Da
Subunit : Interacts with KIT and CSF1R (By similarity). Interacts with URI1; the interaction isphosphorylation-dependent and occurs in a growth-dependent manner
Subcellular location : Nucleus. Cytoplasm. Mitochondrion
2 PDB 3D structures from and Proteopedia for STAP1 :1X1F (3D)
  3MAZ (3D)
 
Secondary accessions : B2R980Explore the universe of human proteins at neXtProt for STAP1: NX_Q9ULZ2 Post-translational modifications:
Phosphorylated on tyrosine by TEC. Phosphorylated on tyrosine by KIT (By similarity)1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9ULZ2 STAP1 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_036240.1 ENSEMBL proteins: ENSP00000265404 ENSP00000379527 Human Recombinant Protein Products for STAP1: Gene Ontology (GO): 5/7 cellular component terms (GO ID links to tree view) (see all 7 ): About this table
STAP1 for ontologies About GeneDecksing STAP1 Antibody Products: Assay Products for STAP1:
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Protein
Domains / Familiesfor STAP1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
STAP1 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9ULZ2 ProtoNet protein and cluster: Q9ULZ2
2 Blocks protein families : IPB000980 SH2 domain signature IPB001849 Pleckstrin-like UniProtKB/Swiss-Prot: STAP1_HUMAN, Q9ULZ2 Similarity : Contains 1 PH domainSimilarity : Contains 1 SH2 domain
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Functionfor STAP1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: STAP1_HUMAN, Q9ULZ2 Function : In BCR signaling, appears to function as a docking protein acting downstream of TEC and participates in apositive feedback loop by increasing the activity of TEC
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
STAP1 for ontologies About GeneDecksing Phenotypes: 1 GenomeRNAi human phenotype for STAP1 :Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for STAP1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for STAP1 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: STAP1 (NM_012108 ) Sino Biological Human cDNA Clone for STAP1 DNA2.0 Custom Codon Optimized Gene
Synthesis Service for STAP1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat STAP1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for STAP1
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Pathways & Interactionsfor STAP1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Signaling events mediated by Stem cell factor receptor (c-Kit) 2 B Cell Receptor Signaling Pathway
3 BioSystems Pathways for STAP1 Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for STAP1 STRING Interaction
Network Preview (showing 5 interactants - click image to see 13)5/13 Interacting proteins for STAP1 (Q9ULZ2 2 , 3 ENSP00000265404 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 13 )About this table Gene Ontology (GO): 4 biological process terms (GO ID links to tree view) : About this table
STAP1 for ontologies About GeneDecksing
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Drugs & Compoundsfor STAP1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for STAP1 Search CenterWatch for drugs/clinical trials and news about STAP1
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Transcriptsfor STAP1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for STAP1 gene: NM_012108.2 Unigene Cluster for STAP1:
Signal transducing adaptor family member 1 Hs.435579 [show with all ESTs ] Unigene Representative Sequence: NM_012108 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000265404 (uc003hde.4 ) ENST00000396225 (uc003hdf.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for STAP1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for STAP1 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: STAP1 (NM_012108 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for STAP1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat STAP1
Additional cDNA sequence: AB023483.1 AK313676.1 BC014958.1
4 DOTS entries : DT.103284 DT.100737067
DT.70105368 DT.92418725 24/45 AceView cDNA sequences (see all 45 ):
BQ027647 BQ061797 BI261386 BQ065848 AI864505 BC014958 BQ065638 BQ003940 AI796408 BU183172 AI289185 BE326685 BG213994 BU166201 BG755532 NM_012108 AI627673 BG759723 BG190231 AI799271 BP368621 AA760861 BQ003527 AI241023 GeneLoc Exon Structure
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Expression for STAP1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section STAP1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AAATACAATGAbout this image STAP1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See STAP1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for STAP1 SOURCE GeneReport for Unigene cluster: Hs.435579 SABiosciences Custom PCR Arrays for STAP1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for STAP1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat STAP1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat STAP1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat STAP1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for STAP1
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Orthologsfor STAP1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for STAP1 gene from 2/9 species (see all 9 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
STAP11
signal transducing adaptor family member 1
62.89(n) 54.72(a)
 
428761 XM_426317.3 XP_426317.3
zebrafish (Danio rerio)
Actinopterygii
stap2b1
signal transducing adaptor family member 2b
48.81(n) 39.33(a)
 
406601 NM_213309.1 NP_998474.1
ENSEMBL Gene Tree for STAP1 (if available)TreeFam Gene Tree for STAP1 (if available)
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Paralogsfor STAP1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for STAP1 gene STAP2 2 1 SIMAP similar gene for STAP1 using alignment to 1 protein entry: STAP1_HUMAN :STAP2
STAP1 for paralogs About GeneDecksing
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Genomic Variantsfor STAP1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 4 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for STAP1 (68424446 - 68473055 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for STAP1: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing STAP1
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Disorders
/ Diseasesfor STAP1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
STAP1 for disorders About GeneDecksing
OMIM gene information: 604298
OMIM disorders : --1 disease for STAP1 : About MalaCards parkinson's disease Human Genome Epidemiology (HuGE) Navigator: STAP1 (2 documents) Export disorders for STAP1 gene to outside databases
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Publicationsfor STAP1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for STAP1 gene, integrated from 9 sources (see all 19 ): (articles sorted by number of sources associating them with STAP1) Utopia : connect your pdf to the dynamic world of online information
Molecular cloning of a docking protein, BRDG1, that acts downstream of the Tec tyrosine kinase. (PubMed id 10518561) 1 , 2 , 3, 9 Ohya K.... Mano H. (1999) S6K1-mediated disassembly of mitochondrial URI/PP1gamma complexes activates a negative feedback program that counters S6K1 survival signaling. (PubMed id 17936702) 1 , 2 Djouder N....Krek W. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Molecular cloning of murine STAP-1, the stem-cell-specific adaptor protein containing PH and SH2 domains. (PubMed id 10679268) 1 , 3 Masuhara M....Osawa M. (2000) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Blood pressure is regulated by an alpha1D-adrenergic r eceptor/dystrophin signalosome. (PubMed id 18468998) 1 Lyssand J.S....Hague C. (2008) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 1 Barbe L....Andersson-Svahn H. (2008) Identifying leukocyte gene expression patterns associated with plasma lipid levels in human subjects. (PubMed id 16806233) 1 Ma J....Liew C.C. (2007) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965) 1 Lamesch P.... Vidal M. (2007)
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External Searches for STAP1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing STAP1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing STAP1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing STAP1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for STAP1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for STAP1 gene: Search GeneIP for patents involving STAP1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor STAP1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for STAP1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for STAP1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for STAP1 OriGene Protein Over-expression Lysate for STAP1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for STAP1 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for STAP1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for STAP1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for STAP1 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for STAP1 OriGene Custom Protein Services for STAP1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat STAP1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing STAP1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat STAP1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat STAP1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat STAP1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat STAP1
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Recombinant Protein for STAP1
STAP1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for STAP1
ThermoFisher Antibodies for STAP1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat STAP1
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Aliases for STAP1
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Disorders / Diseases for STAP1
Domains / Families for STAP1
Drugs / Compounds for STAP1
Expression for STAP1
Function for STAP1
Genomic Views for STAP1
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Pathways / Interactions for STAP1
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Proteins for STAP1
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Summaries for STAP1
Transcripts for STAP1
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