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Aliases for STAM-AS1 Gene

Subcategory (RNA class) for STAM-AS1 Gene


Quality Score for this RNA gene is


Aliases for STAM-AS1 Gene

  • STAM Antisense RNA 1 (Head To Head) 2 3 5
  • Locus 3182 2 3
  • Locus3182 3

External Ids for STAM-AS1 Gene

ORGUL Members for STAM-AS1 Gene

Previous GeneCards Identifiers for STAM-AS1 Gene

  • GC10U901933

Summaries for STAM-AS1 Gene

GeneCards Summary for STAM-AS1 Gene

STAM-AS1 (STAM Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAM-AS1 Gene

Genomics for STAM-AS1 Gene

Regulatory Elements for STAM-AS1 Gene

Enhancers for STAM-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F017058 1.3 FANTOM5 Ensembl ENCODE 4.6 +582.4 582355 6.6 PKNOX1 ZNF133 SIN3A FEZF1 ZNF2 FOS SP3 TSHZ1 ZNF488 REST CUBN TRDMT1 STAM-AS1 LOC105376438 GC10P016843
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around STAM-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for STAM-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000218983 -482 3601 PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CBX5 ZNF207

Genomic Location for STAM-AS1 Gene

17,641,284 bp from pter
17,643,918 bp from pter
2,635 bases
Minus strand

Genomic View for STAM-AS1 Gene

Genes around STAM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAM-AS1 Gene

Proteins for STAM-AS1 Gene

Post-translational modifications for STAM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAM-AS1 Gene

Domains & Families for STAM-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STAM-AS1 Gene

Function for STAM-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAM-AS1 Gene

Localization for STAM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STAM-AS1 Gene

Pathways & Interactions for STAM-AS1 Gene

SuperPathways for STAM-AS1 Gene

No Data Available

Interacting Proteins for STAM-AS1 Gene

Gene Ontology (GO) - Biological Process for STAM-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for STAM-AS1 Gene

Transcripts for STAM-AS1 Gene

mRNA/cDNA for STAM-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STAM-AS1 Gene

No ASD Table

Relevant External Links for STAM-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for STAM-AS1 Gene

mRNA expression in normal human tissues for STAM-AS1 Gene

genes like me logo Genes that share expression patterns with STAM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for STAM-AS1 Gene

Orthologs for STAM-AS1 Gene

Evolution for STAM-AS1 Gene

Gene Tree for STAM-AS1 (if available)
Gene Tree for STAM-AS1 (if available)

No data available for Orthologs for STAM-AS1 Gene

Paralogs for STAM-AS1 Gene

No data available for Paralogs for STAM-AS1 Gene

Variants for STAM-AS1 Gene

Sequence variations from dbSNP and Humsavar for STAM-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs111495495 -- 17,642,107(+) ATTTT(A/G)ACATT nc-transcript-variant
rs11254698 -- 17,641,696(+) TATTA(C/T)TCCCA nc-transcript-variant
rs112589999 -- 17,641,874(+) TAATG(C/G)CCCAA nc-transcript-variant
rs114325814 -- 17,643,737(+) TGTCA(C/G)CTCAC nc-transcript-variant, upstream-variant-2KB
rs115500417 -- 17,645,219(+) CACGT(A/G)GGAAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for STAM-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3622495 CNV loss 21293372

Relevant External Links for STAM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAM-AS1 Gene

Disorders for STAM-AS1 Gene

Relevant External Links for STAM-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for STAM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAM-AS1 Gene

Publications for STAM-AS1 Gene

  1. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. (PMID: 23382218) Sigova A.A. … Young R.A. (Proc. Natl. Acad. Sci. U.S.A. 2013) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for STAM-AS1 Gene

Sources for STAM-AS1 Gene

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