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Aliases for STAG3L5P-PVRIG2P-PILRB Gene

Subcategory (RNA class) for STAG3L5P-PVRIG2P-PILRB Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for STAG3L5P-PVRIG2P-PILRB Gene

  • STAG3L5P-PVRIG2P-PILRB Readthrough 2 3 5
  • LOC101735302-LOC101752334-PILRB Readthrough 3
  • LOC101735302-LOC101752334-PILRB 3

External Ids for STAG3L5P-PVRIG2P-PILRB Gene

Previous GeneCards Identifiers for STAG3L5P-PVRIG2P-PILRB Gene

  • GC07U903498
  • GC07P099953

Summaries for STAG3L5P-PVRIG2P-PILRB Gene

Entrez Gene Summary for STAG3L5P-PVRIG2P-PILRB Gene

  • This locus represents naturally occurring readthrough transcription among the neighboring LOC101735302 (stromal antigen 3 pseudogene), LOC101752334 (poliovirus receptor related immunoglobulin domain containing pseudogene) and PILRB (paired immunoglobin-like type 2 receptor beta) genes on chromosome 7. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Jun 2013]

GeneCards Summary for STAG3L5P-PVRIG2P-PILRB Gene

STAG3L5P-PVRIG2P-PILRB (STAG3L5P-PVRIG2P-PILRB Readthrough) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for STAG3L5P-PVRIG2P-PILRB Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L5P-PVRIG2P-PILRB Gene

Genomics for STAG3L5P-PVRIG2P-PILRB Gene

Regulatory Elements for STAG3L5P-PVRIG2P-PILRB Gene

Enhancers for STAG3L5P-PVRIG2P-PILRB Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H100335 1.1 ENCODE 0.7 -0.1 -60 1 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 CBX5 PILRA GIGYF1 ZSCAN25 ZNF3 ZNF655 TRIM4 PCOLCE LOC100131859 PTCD1 STAG3L5P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STAG3L5P-PVRIG2P-PILRB on UCSC Golden Path with GeneCards custom track

Genomic Location for STAG3L5P-PVRIG2P-PILRB Gene

Chromosome:
7
Start:
100,336,065 bp from pter
End:
100,367,831 bp from pter
Size:
31,767 bases
Orientation:
Plus strand

Genomic View for STAG3L5P-PVRIG2P-PILRB Gene

Genes around STAG3L5P-PVRIG2P-PILRB on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L5P-PVRIG2P-PILRB Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L5P-PVRIG2P-PILRB Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L5P-PVRIG2P-PILRB Gene

Proteins for STAG3L5P-PVRIG2P-PILRB Gene

Post-translational modifications for STAG3L5P-PVRIG2P-PILRB Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAG3L5P-PVRIG2P-PILRB Gene

Domains & Families for STAG3L5P-PVRIG2P-PILRB Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STAG3L5P-PVRIG2P-PILRB Gene

Function for STAG3L5P-PVRIG2P-PILRB Gene

Phenotypes From GWAS Catalog for STAG3L5P-PVRIG2P-PILRB Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L5P-PVRIG2P-PILRB Gene

Localization for STAG3L5P-PVRIG2P-PILRB Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STAG3L5P-PVRIG2P-PILRB Gene

Pathways & Interactions for STAG3L5P-PVRIG2P-PILRB Gene

SuperPathways for STAG3L5P-PVRIG2P-PILRB Gene

No Data Available

Interacting Proteins for STAG3L5P-PVRIG2P-PILRB Gene

Gene Ontology (GO) - Biological Process for STAG3L5P-PVRIG2P-PILRB Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAG3L5P-PVRIG2P-PILRB Gene

Drugs & Compounds for STAG3L5P-PVRIG2P-PILRB Gene

No Compound Related Data Available

Transcripts for STAG3L5P-PVRIG2P-PILRB Gene

mRNA/cDNA for STAG3L5P-PVRIG2P-PILRB Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L5P-PVRIG2P-PILRB Gene

No ASD Table

Relevant External Links for STAG3L5P-PVRIG2P-PILRB Gene

GeneLoc Exon Structure for
STAG3L5P-PVRIG2P-PILRB
ECgene alternative splicing isoforms for
STAG3L5P-PVRIG2P-PILRB

Expression for STAG3L5P-PVRIG2P-PILRB Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAG3L5P-PVRIG2P-PILRB Gene

Orthologs for STAG3L5P-PVRIG2P-PILRB Gene

Evolution for STAG3L5P-PVRIG2P-PILRB Gene

ENSEMBL:
Gene Tree for STAG3L5P-PVRIG2P-PILRB (if available)
TreeFam:
Gene Tree for STAG3L5P-PVRIG2P-PILRB (if available)

No data available for Orthologs for STAG3L5P-PVRIG2P-PILRB Gene

Paralogs for STAG3L5P-PVRIG2P-PILRB Gene

No data available for Paralogs for STAG3L5P-PVRIG2P-PILRB Gene

Variants for STAG3L5P-PVRIG2P-PILRB Gene

Sequence variations from dbSNP and Humsavar for STAG3L5P-PVRIG2P-PILRB Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000134975 -- 100,352,855(+) GTTTG(C/G)GTCCT nc-transcript-variant
rs1000169297 -- 100,365,958(+) TTTTT(G/T)TTTTT intron-variant
rs1000224503 -- 100,359,955(+) GAGGC(A/G)GAGGT intron-variant
rs1000380109 -- 100,336,841(+) TATAC(A/C/T)TTTAT intron-variant, upstream-variant-2KB
rs1000387735 -- 100,342,507(+) GATGC(A/G)GAGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L5P-PVRIG2P-PILRB Gene

Variant ID Type Subtype PubMed ID
esv26986 CNV gain 19812545
esv2734888 CNV deletion 23290073
esv2734890 CNV deletion 23290073
esv2734891 CNV deletion 23290073
esv3445873 CNV insertion 20981092
esv3614293 CNV gain 21293372
esv3614295 CNV gain 21293372
esv3614297 CNV loss 21293372
nsv428180 CNV gain 18775914
nsv436898 CNV insertion 17901297
nsv8183 CNV gain+loss 18304495
nsv831071 CNV loss 17160897
nsv970561 CNV duplication 23825009

Relevant External Links for STAG3L5P-PVRIG2P-PILRB Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAG3L5P-PVRIG2P-PILRB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L5P-PVRIG2P-PILRB Gene

Disorders for STAG3L5P-PVRIG2P-PILRB Gene

Relevant External Links for STAG3L5P-PVRIG2P-PILRB

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STAG3L5P-PVRIG2P-PILRB

No disorders were found for STAG3L5P-PVRIG2P-PILRB Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L5P-PVRIG2P-PILRB Gene

Publications for STAG3L5P-PVRIG2P-PILRB Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  3. Comparative analysis of the paired immunoglobulin-like receptor (PILR) locus in six mammalian genomes: duplication, conversion, and the birth of new genes. (PMID: 16926269) Wilson MD … Koop BF (Physiological genomics 2006) 3 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for STAG3L5P-PVRIG2P-PILRB Gene

Sources for STAG3L5P-PVRIG2P-PILRB Gene

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