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Aliases for STAG3L5P-PVRIG2P-PILRB Gene

Subcategory (RNA class) for STAG3L5P-PVRIG2P-PILRB Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for STAG3L5P-PVRIG2P-PILRB Gene

  • STAG3L5P-PVRIG2P-PILRB Readthrough 2 3
  • LOC101735302-LOC101752334-PILRB Readthrough 3
  • LOC101735302-LOC101752334-PILRB 3

External Ids for STAG3L5P-PVRIG2P-PILRB Gene

ORGUL Members for STAG3L5P-PVRIG2P-PILRB Gene

Previous GeneCards Identifiers for STAG3L5P-PVRIG2P-PILRB Gene

  • GC07U903498
  • GC07P099953

Summaries for STAG3L5P-PVRIG2P-PILRB Gene

Entrez Gene Summary for STAG3L5P-PVRIG2P-PILRB Gene

  • This locus represents naturally occurring readthrough transcription among the neighboring LOC101735302 (stromal antigen 3 pseudogene), LOC101752334 (poliovirus receptor related immunoglobulin domain containing pseudogene) and PILRB (paired immunoglobin-like type 2 receptor beta) genes on chromosome 7. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Jun 2013]

GeneCards Summary for STAG3L5P-PVRIG2P-PILRB Gene

STAG3L5P-PVRIG2P-PILRB (STAG3L5P-PVRIG2P-PILRB Readthrough) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L5P-PVRIG2P-PILRB Gene

Genomics for STAG3L5P-PVRIG2P-PILRB Gene

Genomic Location for STAG3L5P-PVRIG2P-PILRB Gene

Start:
100,336,065 bp from pter
End:
100,367,831 bp from pter
Size:
31,767 bases
Orientation:
Plus strand

Genomic View for STAG3L5P-PVRIG2P-PILRB Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for STAG3L5P-PVRIG2P-PILRB Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L5P-PVRIG2P-PILRB Gene

No data available for Regulatory Elements for STAG3L5P-PVRIG2P-PILRB Gene

Proteins for STAG3L5P-PVRIG2P-PILRB Gene

  • Protein details for STAG3L5P-PVRIG2P-PILRB Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A6YYB5
    Recommended name:
    HCG2024112, isoform CRA_d
    Protein Accession:
    A0A0A6YYB5
    Secondary Accessions:

    Protein attributes for STAG3L5P-PVRIG2P-PILRB Gene

    Size:
    227 amino acids
    Molecular mass:
    25542 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STAG3L5P-PVRIG2P-PILRB Gene

Proteomics data for STAG3L5P-PVRIG2P-PILRB Gene at MOPED

Post-translational modifications for STAG3L5P-PVRIG2P-PILRB Gene

No Post-translational modifications

Other Protein References for STAG3L5P-PVRIG2P-PILRB Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for STAG3L5P-PVRIG2P-PILRB Gene

Domains for STAG3L5P-PVRIG2P-PILRB Gene

Protein Domains for STAG3L5P-PVRIG2P-PILRB Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with STAG3L5P-PVRIG2P-PILRB: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STAG3L5P-PVRIG2P-PILRB Gene

Function for STAG3L5P-PVRIG2P-PILRB Gene

Gene Ontology (GO) - Molecular Function for STAG3L5P-PVRIG2P-PILRB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with STAG3L5P-PVRIG2P-PILRB: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for STAG3L5P-PVRIG2P-PILRB Gene

Localization for STAG3L5P-PVRIG2P-PILRB Gene

Gene Ontology (GO) - Cellular Components for STAG3L5P-PVRIG2P-PILRB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane --
genes like me logo Genes that share ontologies with STAG3L5P-PVRIG2P-PILRB: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for STAG3L5P-PVRIG2P-PILRB Gene

Pathways for STAG3L5P-PVRIG2P-PILRB Gene

SuperPathways for STAG3L5P-PVRIG2P-PILRB Gene

No Data Available

Interacting Proteins for STAG3L5P-PVRIG2P-PILRB Gene

Gene Ontology (GO) - Biological Process for STAG3L5P-PVRIG2P-PILRB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway --
GO:0007171 activation of transmembrane receptor protein tyrosine kinase activity --
genes like me logo Genes that share ontologies with STAG3L5P-PVRIG2P-PILRB: view

No data available for Pathways by source for STAG3L5P-PVRIG2P-PILRB Gene

Transcripts for STAG3L5P-PVRIG2P-PILRB Gene

mRNA/cDNA for STAG3L5P-PVRIG2P-PILRB Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L5P-PVRIG2P-PILRB Gene

No ASD Table

Relevant External Links for STAG3L5P-PVRIG2P-PILRB Gene

GeneLoc Exon Structure for
STAG3L5P-PVRIG2P-PILRB
ECgene alternative splicing isoforms for
STAG3L5P-PVRIG2P-PILRB

Expression for STAG3L5P-PVRIG2P-PILRB Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for STAG3L5P-PVRIG2P-PILRB Gene

Orthologs for STAG3L5P-PVRIG2P-PILRB Gene

Evolution for STAG3L5P-PVRIG2P-PILRB Gene

ENSEMBL:
Gene Tree for STAG3L5P-PVRIG2P-PILRB (if available)
TreeFam:
Gene Tree for STAG3L5P-PVRIG2P-PILRB (if available)

No data available for Orthologs for STAG3L5P-PVRIG2P-PILRB Gene

Paralogs for STAG3L5P-PVRIG2P-PILRB Gene

No data available for Paralogs for STAG3L5P-PVRIG2P-PILRB Gene

Variants for STAG3L5P-PVRIG2P-PILRB Gene

Sequence variations from dbSNP and Humsavar for STAG3L5P-PVRIG2P-PILRB Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs858640 -- 100,343,526(+) cctcc(A/C)gagta intron-variant
rs858641 -- 100,343,592(+) agacg(A/G)ggttt intron-variant
rs1636982 -- 100,344,671(+) TGGAC(A/G)AGCTG intron-variant
rs1636983 -- 100,344,273(-) GTCTG(C/T)GCCGG intron-variant
rs1636985 -- 100,345,522(+) tctca(C/G)catgt intron-variant

Relevant External Links for STAG3L5P-PVRIG2P-PILRB Gene

HapMap Linkage Disequilibrium report
STAG3L5P-PVRIG2P-PILRB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for STAG3L5P-PVRIG2P-PILRB Gene

Disorders for STAG3L5P-PVRIG2P-PILRB Gene

No disorders were found for STAG3L5P-PVRIG2P-PILRB Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for STAG3L5P-PVRIG2P-PILRB Gene

Publications for STAG3L5P-PVRIG2P-PILRB Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Comparative analysis of the paired immunoglobulin-like receptor (PILR) locus in six mammalian genomes: duplication, conversion, and the birth of new genes. (PMID: 16926269) Wilson M.D. … Koop B.F. (Physiol. Genomics 2006) 3

Products for STAG3L5P-PVRIG2P-PILRB Gene

Sources for STAG3L5P-PVRIG2P-PILRB Gene

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