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Aliases for STAG3L5P Gene

Aliases for STAG3L5P Gene

  • Stromal Antigen 3-Like 5 Pseudogene 2 3 5

External Ids for STAG3L5P Gene

Previous GeneCards Identifiers for STAG3L5P Gene

  • GC07P099950

Summaries for STAG3L5P Gene

GeneCards Summary for STAG3L5P Gene

STAG3L5P (Stromal Antigen 3-Like 5 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L5P Gene

Genomics for STAG3L5P Gene

Regulatory Elements for STAG3L5P Gene

Enhancers for STAG3L5P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F101116 1 FANTOM5 ENCODE 72 +787.7 787665 15.1 HDGF MLX ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF416 ZNF207 ENSG00000242798 GIGYF1 STAG3L5P PPP1R35 PCOLCE-AS1 MBLAC1 MEPCE PCOLCE ACTL6B SERPINE1
GH07F100356 1.2 Ensembl ENCODE 70.9 +21.9 21860 2.7 ZFP64 RAD21 ZNF354C FOS EGR2 ZNF202 ZNF680 ZNF654 ZBTB11 ZEB2 ZSCAN25 GIGYF1 PILRA LOC100131859 ZNF655 STAG3L5P AP4M1 ENSG00000242798 PPP1R35 PCOLCE-AS1
GH07F101110 0.6 Ensembl ENCODE 70.6 +777.2 777231 4.9 ZNF493 ZFP64 ZNF121 ZNF354C ZNF138 ZNF366 SCRT2 KLF7 FOS ZNF202 GIGYF1 STAG3L5P ENSG00000242798 PPP1R35 PCOLCE-AS1 PCOLCE ACTL6B MEPCE VGF NAT16
GH07F100913 0.6 ENCODE 62.3 +578.0 578015 1.1 HDGF ATF1 PKNOX1 ARNT ZFP64 YY1 ZNF766 GATA2 ZNF202 NCOA1 GIGYF1 STAG3L5P AP4M1 ENSG00000242798 PPP1R35 PCOLCE-AS1 MUC3A PCOLCE ACTL6B SLC12A9
GH07F099579 1.4 FANTOM5 Ensembl ENCODE 59.5 -755.8 -755778 1.4 ZNF2 RAD21 ZBTB40 ZNF354C ZNF366 ZNF202 ZNF263 ZNF680 REST ZNF518A ZSCAN25 TRRAP LOC100131859 ZNF655 ENSG00000242798 STAG3L5P AP4M1 LOC101927550 LOC100419643 PPP1R35
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around STAG3L5P on UCSC Golden Path with GeneCards custom track

Promoters for STAG3L5P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000631130 121 2401 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF548

Genomic Location for STAG3L5P Gene

Chromosome:
7
Start:
100,336,079 bp from pter
End:
100,351,900 bp from pter
Size:
15,822 bases
Orientation:
Plus strand

Genomic View for STAG3L5P Gene

Genes around STAG3L5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L5P Gene

Proteins for STAG3L5P Gene

Post-translational modifications for STAG3L5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAG3L5P Gene

Domains & Families for STAG3L5P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STAG3L5P Gene

Function for STAG3L5P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L5P Gene

Localization for STAG3L5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STAG3L5P Gene

Pathways & Interactions for STAG3L5P Gene

SuperPathways for STAG3L5P Gene

No Data Available

Interacting Proteins for STAG3L5P Gene

Gene Ontology (GO) - Biological Process for STAG3L5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAG3L5P Gene

Transcripts for STAG3L5P Gene

mRNA/cDNA for STAG3L5P Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L5P Gene

No ASD Table

Relevant External Links for STAG3L5P Gene

GeneLoc Exon Structure for
STAG3L5P
ECgene alternative splicing isoforms for
STAG3L5P

Expression for STAG3L5P Gene

mRNA expression in normal human tissues for STAG3L5P Gene

NURSA nuclear receptor signaling pathways regulating expression of STAG3L5P Gene:

STAG3L5P
genes like me logo Genes that share expression patterns with STAG3L5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for STAG3L5P Gene

Orthologs for STAG3L5P Gene

Evolution for STAG3L5P Gene

ENSEMBL:
Gene Tree for STAG3L5P (if available)
TreeFam:
Gene Tree for STAG3L5P (if available)

No data available for Orthologs for STAG3L5P Gene

Paralogs for STAG3L5P Gene

No data available for Paralogs for STAG3L5P Gene

Variants for STAG3L5P Gene

Sequence variations from dbSNP and Humsavar for STAG3L5P Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs111453204 -- 100,337,359(+) TGCCT(A/T)GTCTC intron-variant, upstream-variant-2KB
rs112173568 -- 100,334,807(+) GCAAC(C/T)TCTGT intron-variant, upstream-variant-2KB
rs112294400 -- 100,334,149(+) TTTTA(A/G)TAGAG intron-variant, upstream-variant-2KB
rs112324042 -- 100,338,420(+) GACTC(A/C)GTCTC intron-variant
rs112345649 -- 100,339,858(+) AATCC(A/G)TTATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L5P Gene

Variant ID Type Subtype PubMed ID
esv26986 CNV gain 19812545
esv2734888 CNV deletion 23290073
esv2734890 CNV deletion 23290073
esv3614293 CNV gain 21293372
esv3614295 CNV gain 21293372
nsv428180 CNV gain 18775914
nsv436898 CNV insertion 17901297
nsv8183 CNV gain+loss 18304495
nsv831071 CNV loss 17160897
nsv970561 CNV duplication 23825009

Relevant External Links for STAG3L5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAG3L5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L5P Gene

Disorders for STAG3L5P Gene

Relevant External Links for STAG3L5P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STAG3L5P

No disorders were found for STAG3L5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L5P Gene

Publications for STAG3L5P Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Comparative analysis of the paired immunoglobulin-like receptor (PILR) locus in six mammalian genomes: duplication, conversion, and the birth of new genes. (PMID: 16926269) Wilson M.D. … Koop B.F. (Physiol. Genomics 2006) 3 64
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64

Products for STAG3L5P Gene

Sources for STAG3L5P Gene

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