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Aliases for STAG3L4 Gene

Aliases for STAG3L4 Gene

  • Stromal Antigen 3-Like 4 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 4 4
  • Stromal Antigen 3 Pseudogene 3
  • Stromal Antigen 3-Like 4 2
  • STAG3-Like Protein 4 3
  • STAG3L4P 3

External Ids for STAG3L4 Gene

Previous GeneCards Identifiers for STAG3L4 Gene

  • GC07P066406
  • GC07P066767
  • GC07P062951

Summaries for STAG3L4 Gene

GeneCards Summary for STAG3L4 Gene

STAG3L4 (Stromal Antigen 3-Like 4 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L4 Gene

Genomics for STAG3L4 Gene

Regulatory Elements for STAG3L4 Gene

Enhancers for STAG3L4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F067318 0.3 FANTOM5 61.4 +16.3 16251 0.2 GATAD2A SOX5 SAP130 FOXA3 NFIL3 CEBPA NR2F6 RXRB STAG3L4 ENSG00000228019 ENSG00000273448
GH07F067392 0.6 ENCODE 25 +90.4 90392 1.6 BRD4 SREBF1 CTBP1 POLR2A KDM1A REST STAG3L4 LINC01372 GC07P067381 LOC105375340
GH07F067301 0.2 ENCODE 19.6 +0.1 52 2.6 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF143 FOS KLF13 TYW1 STAG3L4 ENSG00000244657 LOC100420547 ENSG00000229180 ENSG00000223473 ENSG00000232546 ENSG00000230189 ENSG00000273448 GTF2IP23
GH07F067359 0.8 ENCODE 16.5 +57.8 57800 1.1 PTRF RAD21 ZNF766 CBX5 ZNF391 KLF13 CEBPB ZEB2 REST HDAC8 STAG3L4 LOC100420547 GC07P067349 GC07P067381
GH07F067127 1.1 FANTOM5 Ensembl ENCODE 16.4 -173.2 -173188 3.3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF766 FOS SP5 TYW1 RABGEF1 ENSG00000229180 ENSG00000223473 STAG3L4 ENSG00000244657 LOC100420547 ENSG00000230189 GTF2IP23 ENSG00000232559
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around STAG3L4 on UCSC Golden Path with GeneCards custom track

Promoters for STAG3L4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001560429 -21 2801 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF143 FOS KLF13

Genomic Location for STAG3L4 Gene

Chromosome:
7
Start:
67,302,621 bp from pter
End:
67,321,526 bp from pter
Size:
18,906 bases
Orientation:
Plus strand

Genomic View for STAG3L4 Gene

Genes around STAG3L4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L4 Gene

Proteins for STAG3L4 Gene

  • Protein details for STAG3L4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TBR4-ST3L4_HUMAN
    Recommended name:
    Putative STAG3-like protein 4
    Protein Accession:
    Q8TBR4
    Secondary Accessions:
    • Q9H8W0

    Protein attributes for STAG3L4 Gene

    Size:
    150 amino acids
    Molecular mass:
    17020 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STAG3L4 Gene

Post-translational modifications for STAG3L4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L4 Gene

Domains & Families for STAG3L4 Gene

Protein Domains for STAG3L4 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for STAG3L4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TBR4

UniProtKB/Swiss-Prot:

ST3L4_HUMAN :
  • Belongs to the SCC3 family.
Family:
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L4: view

No data available for Gene Families for STAG3L4 Gene

Function for STAG3L4 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L4 Gene

Localization for STAG3L4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STAG3L4 Gene

Pathways & Interactions for STAG3L4 Gene

SuperPathways for STAG3L4 Gene

No Data Available

Interacting Proteins for STAG3L4 Gene

Gene Ontology (GO) - Biological Process for STAG3L4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAG3L4 Gene

Transcripts for STAG3L4 Gene

mRNA/cDNA for STAG3L4 Gene

Unigene Clusters for STAG3L4 Gene

Stromal antigen 3-like 4:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L4 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c · 5d ^ 6a · 6b ^ 7a · 7b · 7c
SP1: - -
SP2: - - -
SP3:
SP4: -
SP5: -
SP6: - - - - - -
SP7: - - - -
SP8: - - - -

Relevant External Links for STAG3L4 Gene

GeneLoc Exon Structure for
STAG3L4
ECgene alternative splicing isoforms for
STAG3L4

Expression for STAG3L4 Gene

mRNA expression in normal human tissues for STAG3L4 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for STAG3L4 Gene



Protein tissue co-expression partners for STAG3L4 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of STAG3L4 Gene:

STAG3L4

SOURCE GeneReport for Unigene cluster for STAG3L4 Gene:

Hs.632013
genes like me logo Genes that share expression patterns with STAG3L4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for STAG3L4 Gene

Orthologs for STAG3L4 Gene

Evolution for STAG3L4 Gene

ENSEMBL:
Gene Tree for STAG3L4 (if available)
TreeFam:
Gene Tree for STAG3L4 (if available)

No data available for Orthologs for STAG3L4 Gene

Paralogs for STAG3L4 Gene

(9) SIMAP similar genes for STAG3L4 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STAG3L4: view

No data available for Paralogs for STAG3L4 Gene

Variants for STAG3L4 Gene

Sequence variations from dbSNP and Humsavar for STAG3L4 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10434975 -- 67,302,820(+) CCTGC(A/G)TGTAC nc-transcript-variant, upstream-variant-2KB
rs10434976 -- 67,303,854(+) CCCCC(A/C)AACCC intron-variant, upstream-variant-2KB
rs10434977 -- 67,303,965(+) ttttt(G/T)ttgtt intron-variant, upstream-variant-2KB
rs1045513 -- 67,309,617(+) TGCAC(C/G)AAGAT nc-transcript-variant
rs10807709 -- 67,308,122(+) GATTC(G/T)CCTGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L4 Gene

Variant ID Type Subtype PubMed ID
dgv1919e212 CNV loss 25503493
dgv6447n100 CNV loss 25217958
esv2668831 CNV deletion 23128226
esv2759535 CNV gain 17122850
esv29559 CNV gain 19812545
esv3571899 CNV loss 25503493
esv3571904 CNV loss 25503493
esv3613545 CNV loss 21293372
esv3613546 CNV loss 21293372
esv3891136 CNV gain 25118596
nsv1032237 CNV loss 25217958
nsv1146102 OTHER inversion 26484159
nsv510086 OTHER sequence alteration 20534489
nsv970872 CNV duplication 23825009
nsv970873 CNV duplication 23825009

Relevant External Links for STAG3L4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAG3L4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L4 Gene

Disorders for STAG3L4 Gene

Relevant External Links for STAG3L4

Genetic Association Database (GAD)
STAG3L4
Human Genome Epidemiology (HuGE) Navigator
STAG3L4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STAG3L4

No disorders were found for STAG3L4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L4 Gene

Publications for STAG3L4 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Genome-wide association study of age at menarche in African-American women. (PMID: 23599027) Demerath E.W. … Haiman C.A. (Hum. Mol. Genet. 2013) 3 64
  3. Whole genome association scan for genetic polymorphisms influencing information processing speed. (PMID: 21130836) Luciano M. … Deary I.J. (Biol Psychol 2011) 46 64
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64
  5. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 46 64

Products for STAG3L4 Gene

Sources for STAG3L4 Gene

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