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Aliases for STAG3L4 Gene

Aliases for STAG3L4 Gene

  • Stromal Antigen 3-Like 4 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 4 4
  • Stromal Antigen 3 Pseudogene 3
  • Stromal Antigen 3-Like 4 2
  • STAG3-Like Protein 4 3
  • STAG3L4P 3

External Ids for STAG3L4 Gene

Previous GeneCards Identifiers for STAG3L4 Gene

  • GC07P066406
  • GC07P066767
  • GC07P062951

Summaries for STAG3L4 Gene

GeneCards Summary for STAG3L4 Gene

STAG3L4 (Stromal Antigen 3-Like 4 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L4 Gene

Genomics for STAG3L4 Gene

Regulatory Elements for STAG3L4 Gene

Enhancers for STAG3L4 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around STAG3L4 on UCSC Golden Path with GeneCards custom track

Promoters for STAG3L4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around STAG3L4 on UCSC Golden Path with GeneCards custom track

Genomic Location for STAG3L4 Gene

Chromosome:
7
Start:
67,302,621 bp from pter
End:
67,321,526 bp from pter
Size:
18,906 bases
Orientation:
Plus strand

Genomic View for STAG3L4 Gene

Genes around STAG3L4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L4 Gene

Proteins for STAG3L4 Gene

  • Protein details for STAG3L4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TBR4-ST3L4_HUMAN
    Recommended name:
    Putative STAG3-like protein 4
    Protein Accession:
    Q8TBR4
    Secondary Accessions:
    • Q9H8W0

    Protein attributes for STAG3L4 Gene

    Size:
    150 amino acids
    Molecular mass:
    17020 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STAG3L4 Gene

Proteomics data for STAG3L4 Gene at MOPED

Post-translational modifications for STAG3L4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L4 Gene

Domains & Families for STAG3L4 Gene

Protein Domains for STAG3L4 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for STAG3L4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TBR4

UniProtKB/Swiss-Prot:

ST3L4_HUMAN :
  • Belongs to the SCC3 family.
Family:
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L4: view

No data available for Gene Families for STAG3L4 Gene

Function for STAG3L4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L4 Gene

Localization for STAG3L4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STAG3L4 Gene

Pathways & Interactions for STAG3L4 Gene

SuperPathways for STAG3L4 Gene

No Data Available

Interacting Proteins for STAG3L4 Gene

Gene Ontology (GO) - Biological Process for STAG3L4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAG3L4 Gene

Drugs & Compounds for STAG3L4 Gene

No Compound Related Data Available

Transcripts for STAG3L4 Gene

mRNA/cDNA for STAG3L4 Gene

Unigene Clusters for STAG3L4 Gene

Stromal antigen 3-like 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L4 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c · 5d ^ 6a · 6b ^ 7a · 7b · 7c
SP1: - -
SP2: - - -
SP3:
SP4: -
SP5: -
SP6: - - - - - -
SP7: - - - -
SP8: - - - -

Relevant External Links for STAG3L4 Gene

GeneLoc Exon Structure for
STAG3L4
ECgene alternative splicing isoforms for
STAG3L4

Expression for STAG3L4 Gene

mRNA expression in normal human tissues for STAG3L4 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for STAG3L4 Gene



SOURCE GeneReport for Unigene cluster for STAG3L4 Gene Hs.632013

genes like me logo Genes that share expression patterns with STAG3L4: view

Protein tissue co-expression partners for STAG3L4 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for STAG3L4 Gene

Orthologs for STAG3L4 Gene

Evolution for STAG3L4 Gene

ENSEMBL:
Gene Tree for STAG3L4 (if available)
TreeFam:
Gene Tree for STAG3L4 (if available)

No data available for Orthologs for STAG3L4 Gene

Paralogs for STAG3L4 Gene

(9) SIMAP similar genes for STAG3L4 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STAG3L4: view

No data available for Paralogs for STAG3L4 Gene

Variants for STAG3L4 Gene

Sequence variations from dbSNP and Humsavar for STAG3L4 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1045513 - 67,309,617(+) TGCAC(A/C/G)AAGAT nc-transcript-variant
rs887715 -- 67,321,397(+) CCATA(C/T)AAGGA nc-transcript-variant
rs1318091 -- 67,321,678(+) CTTAT(A/G)TTTTT downstream-variant-500B
rs6960865 -- 67,317,490(+) cctcc(A/C)aaact intron-variant
rs12667204 -- 67,307,421(+) ACAGG(C/T)GTTAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L4 Gene

Variant ID Type Subtype PubMed ID
dgv2091e1 CNV Complex 17122850
nsv888330 CNV Gain 21882294
dgv2092e1 CNV Complex 17122850
esv29559 CNV Gain 19812545
nsv510086 CNV Loss 20534489
esv2668831 CNV Deletion 23128226

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for STAG3L4 Gene

Disorders for STAG3L4 Gene

Relevant External Links for STAG3L4

Genetic Association Database (GAD)
STAG3L4
Human Genome Epidemiology (HuGE) Navigator
STAG3L4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STAG3L4

No disorders were found for STAG3L4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L4 Gene

Publications for STAG3L4 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. Genome-wide association study of age at menarche in African-American women. (PMID: 23599027) Demerath E.W. … Haiman C.A. (Hum. Mol. Genet. 2013) 3
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams- Beuren syndrome deletion. (PMID: 10698974) Pezzi N. … Barbero J.L. (FASEB J. 2000) 3

Products for STAG3L4 Gene

Sources for STAG3L4 Gene

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