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Aliases for STAG3L3 Gene

Aliases for STAG3L3 Gene

  • Stromal Antigen 3-Like 3 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 3 4
  • Stromal Antigen 3 Pseudogene 3
  • Stromal Antigen 3-Like 3 2
  • STAG3-Like Protein 3 3
  • STAG3L3P 3
  • STAG3L2 3
  • STAG3L1 3

External Ids for STAG3L3 Gene

Previous GeneCards Identifiers for STAG3L3 Gene

  • GC07M072109
  • GC07M072440
  • GC07M071801

Summaries for STAG3L3 Gene

GeneCards Summary for STAG3L3 Gene

STAG3L3 (Stromal Antigen 3-Like 3 (Pseudogene)) is a Pseudogene.

Additional gene information for STAG3L3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L3 Gene

Genomics for STAG3L3 Gene

Regulatory Elements for STAG3L3 Gene

Enhancers for STAG3L3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H073890 1.5 FANTOM5 Ensembl ENCODE dbSUPER 71.3 -884.5 -884459 0 ZBTB21 ZNF140 ZNF697 ZNF664 ZNF791 ZNF354C RBAK ZNF433 ZNF202 ZNF680 NSUN5P2 STAG3L3 BAZ1B GTF2IRD2 METTL27 POM121B MIR590 GTF2IRD2P1 LOC101926943 TBL2
GH07H072827 1.3 ENCODE dbSUPER 61.4 +176.4 176378 4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 STAG3L3 POM121B POM121 NSUN5P2 TBL2 TYW1B FKBP6 NSUN5 BUD23 PMS2P7
GH07H073736 2 FANTOM5 Ensembl ENCODE dbSUPER 37.5 -734.8 -734782 7 HDGF FOXA2 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZBTB7B YY1 METTL27 STAG3L3 POM121B ABHD11-AS1 POM121 NSUN5P2 MIR590 FKBP6 BUD23 SPDYE7P
GH07H073715 1.7 FANTOM5 ENCODE dbSUPER 28.1 -711.6 -711591 4 FOXA2 ZFP64 ARID4B SIN3A FEZF1 ZNF766 ZNF143 ZNF207 FOS SP3 POM121 POM121B NSUN5P2 MIR590 STAG3L3 NSUN5 TBL2 PMS2P7 RFC2 FKBP6
GH07H073825 1.6 Ensembl ENCODE dbSUPER 24.6 -824.0 -823994 8 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B ZNF207 METTL27 BUD23 STAG3L3 POM121B POM121 TMEM270 NSUN5P2 DNAJC30 NSUN5 VPS37D
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STAG3L3 on UCSC Golden Path with GeneCards custom track

Promoters for STAG3L3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000213406 43 2201 HDAC1 MXI1 ATF1 ZBTB21 SIN3A E2F1 POLR2A ZNF600 PRDM10 KLF8

Genomic Location for STAG3L3 Gene

Chromosome:
7
Start:
72,969,696 bp from pter
End:
73,005,943 bp from pter
Size:
36,248 bases
Orientation:
Minus strand

Genomic View for STAG3L3 Gene

Genes around STAG3L3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L3 Gene

Proteins for STAG3L3 Gene

  • Protein details for STAG3L3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CL85-ST3L3_HUMAN
    Recommended name:
    STAG3-like protein 3
    Protein Accession:
    P0CL85
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L3 Gene

    Size:
    134 amino acids
    Molecular mass:
    15609 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for STAG3L3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for STAG3L3 Gene

Post-translational modifications for STAG3L3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L3 Gene

Domains & Families for STAG3L3 Gene

Protein Domains for STAG3L3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for STAG3L3 Gene

Graphical View of Domain Structure for InterPro Entry

P0CL85

UniProtKB/Swiss-Prot:

ST3L3_HUMAN :
  • Belongs to the SCC3 family.
Family:
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L3: view

No data available for Gene Families for STAG3L3 Gene

Function for STAG3L3 Gene

Phenotypes From GWAS Catalog for STAG3L3 Gene

Phenotypes for STAG3L3 Gene

GenomeRNAi human phenotypes for STAG3L3:
genes like me logo Genes that share phenotypes with STAG3L3: view

Animal Model Products

CRISPR Products

miRNA for STAG3L3 Gene

miRTarBase miRNAs that target STAG3L3

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for STAG3L3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for STAG3L3 Gene

Localization for STAG3L3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for STAG3L3 gene
Compartment Confidence
mitochondrion 3
nucleus 3
cytosol 1

Gene Ontology (GO) - Cellular Components for STAG3L3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with STAG3L3: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for STAG3L3 Gene

Pathways & Interactions for STAG3L3 Gene

SuperPathways for STAG3L3 Gene

No Data Available

Interacting Proteins for STAG3L3 Gene

Gene Ontology (GO) - Biological Process for STAG3L3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAG3L3 Gene

Drugs & Compounds for STAG3L3 Gene

No Compound Related Data Available

Transcripts for STAG3L3 Gene

mRNA/cDNA for STAG3L3 Gene

(1) REFSEQ mRNAs :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for STAG3L3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L3 Gene

No ASD Table

Relevant External Links for STAG3L3 Gene

GeneLoc Exon Structure for
STAG3L3
ECgene alternative splicing isoforms for
STAG3L3

Expression for STAG3L3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STAG3L3 Gene

NURSA nuclear receptor signaling pathways regulating expression of STAG3L3 Gene:

STAG3L3
genes like me logo Genes that share expression patterns with STAG3L3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAG3L3 Gene

Orthologs for STAG3L3 Gene

Evolution for STAG3L3 Gene

ENSEMBL:
Gene Tree for STAG3L3 (if available)
TreeFam:
Gene Tree for STAG3L3 (if available)

No data available for Orthologs for STAG3L3 Gene

Paralogs for STAG3L3 Gene

(5) SIMAP similar genes for STAG3L3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STAG3L3: view

No data available for Paralogs for STAG3L3 Gene

Variants for STAG3L3 Gene

Sequence variations from dbSNP and Humsavar for STAG3L3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs112397685 -- 72,999,947(+) TCCGA(C/T)CCCTC intron-variant
rs112985155 -- 72,997,107(+) CCTAT(A/T)ACCCA intron-variant, nc-transcript-variant, downstream-variant-500B
rs113569099 -- 73,000,018(+) GTCTT(C/T)ATACT intron-variant
rs137991935 -- 72,999,508(+) CACTG(A/C)CACAC nc-transcript-variant, reference, missense
rs142007583 -- 72,999,523(+) CTCTC(C/T)GTCCA nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for STAG3L3 Gene

Variant ID Type Subtype PubMed ID
esv26856 CNV gain 19812545
esv2759537 CNV gain+loss 17122850
esv2764061 CNV gain+loss 21179565
esv34349 CNV gain 17911159
esv3613678 CNV loss 21293372
nsv1023115 CNV gain 25217958
nsv1029162 CNV loss 25217958
nsv1161563 CNV deletion 26073780
nsv428171 CNV gain 18775914
nsv469664 CNV loss 16826518
nsv520573 CNV gain+loss 19592680
nsv821246 CNV deletion 20802225
nsv831025 CNV loss 17160897
nsv950546 CNV deletion 24416366
nsv967332 CNV duplication 23825009
nsv970876 CNV duplication 23825009

Relevant External Links for STAG3L3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAG3L3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L3 Gene

Disorders for STAG3L3 Gene

Relevant External Links for STAG3L3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STAG3L3

No disorders were found for STAG3L3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L3 Gene

Publications for STAG3L3 Gene

  1. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 60
  4. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 4 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for STAG3L3 Gene

Sources for STAG3L3 Gene

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