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Aliases for STAG3L3 Gene

Aliases for STAG3L3 Gene

  • Stromal Antigen 3-Like 3 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 3 4
  • Stromal Antigen 3 Pseudogene 3
  • Stromal Antigen 3-Like 3 2
  • STAG3-Like Protein 3 3
  • STAG3L3P 3
  • STAG3L2 3
  • STAG3L1 3

External Ids for STAG3L3 Gene

Previous GeneCards Identifiers for STAG3L3 Gene

  • GC07M072109
  • GC07M072440
  • GC07M071801

Summaries for STAG3L3 Gene

GeneCards Summary for STAG3L3 Gene

STAG3L3 (Stromal Antigen 3-Like 3 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L3 Gene

Genomics for STAG3L3 Gene

Regulatory Elements for STAG3L3 Gene

Enhancers for STAG3L3 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around STAG3L3 on UCSC Golden Path with GeneCards custom track

Promoters for STAG3L3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around STAG3L3 on UCSC Golden Path with GeneCards custom track

Genomic Location for STAG3L3 Gene

Chromosome:
7
Start:
72,969,696 bp from pter
End:
73,005,943 bp from pter
Size:
36,248 bases
Orientation:
Minus strand

Genomic View for STAG3L3 Gene

Genes around STAG3L3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L3 Gene

Proteins for STAG3L3 Gene

  • Protein details for STAG3L3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CL85-ST3L3_HUMAN
    Recommended name:
    STAG3-like protein 3
    Protein Accession:
    P0CL85
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L3 Gene

    Size:
    134 amino acids
    Molecular mass:
    15609 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for STAG3L3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for STAG3L3 Gene

Proteomics data for STAG3L3 Gene at MOPED

Post-translational modifications for STAG3L3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L3 Gene

Domains & Families for STAG3L3 Gene

Protein Domains for STAG3L3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for STAG3L3 Gene

Graphical View of Domain Structure for InterPro Entry

P0CL85

UniProtKB/Swiss-Prot:

ST3L3_HUMAN :
  • Contains 1 SCD (stromalin conservative) domain.
  • Belongs to the SCC3 family.
Domain:
  • Contains 1 SCD (stromalin conservative) domain.
Family:
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L3: view

No data available for Gene Families for STAG3L3 Gene

Function for STAG3L3 Gene

Phenotypes for STAG3L3 Gene

GenomeRNAi human phenotypes for STAG3L3:
genes like me logo Genes that share phenotypes with STAG3L3: view

miRNA for STAG3L3 Gene

miRTarBase miRNAs that target STAG3L3

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for STAG3L3 Gene

Localization for STAG3L3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for STAG3L3 Gene COMPARTMENTS Subcellular localization image for STAG3L3 gene
Compartment Confidence
mitochondrion 3
cytosol 1

No data available for Gene Ontology (GO) - Cellular Components for STAG3L3 Gene

Pathways & Interactions for STAG3L3 Gene

SuperPathways for STAG3L3 Gene

No Data Available

Interacting Proteins for STAG3L3 Gene

Gene Ontology (GO) - Biological Process for STAG3L3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAG3L3 Gene

Drugs & Compounds for STAG3L3 Gene

No Compound Related Data Available

Transcripts for STAG3L3 Gene

mRNA/cDNA for STAG3L3 Gene

(1) REFSEQ mRNAs :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L3 Gene

No ASD Table

Relevant External Links for STAG3L3 Gene

GeneLoc Exon Structure for
STAG3L3
ECgene alternative splicing isoforms for
STAG3L3

Expression for STAG3L3 Gene

mRNA expression in normal human tissues for STAG3L3 Gene

genes like me logo Genes that share expression patterns with STAG3L3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for STAG3L3 Gene

Orthologs for STAG3L3 Gene

Evolution for STAG3L3 Gene

ENSEMBL:
Gene Tree for STAG3L3 (if available)
TreeFam:
Gene Tree for STAG3L3 (if available)

No data available for Orthologs for STAG3L3 Gene

Paralogs for STAG3L3 Gene

(5) SIMAP similar genes for STAG3L3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STAG3L3: view

No data available for Paralogs for STAG3L3 Gene

Variants for STAG3L3 Gene

Sequence variations from dbSNP and Humsavar for STAG3L3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs2523281 -- 72,997,989(+) cgggc(A/G)cctgt nc-transcript-variant
rs2530480 -- 72,998,479(+) TCCAT(C/T)TGTCT intron-variant
rs3735506 -- 72,999,476(+) TTAAG(G/T)ATAAG nc-transcript-variant
rs76183279 -- 73,003,217(-) GCCTA(C/T)TTGTG intron-variant
rs236601 -- 72,999,988(-) CATCT(C/T)AGAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L3 Gene

Variant ID Type Subtype PubMed ID
dgv2095e1 CNV Complex 17122850
nsv520573 CNV Gain+Loss 19592680
esv34349 CNV Gain 17911159
dgv2098e1 CNV Complex 17122850
nsv428171 CNV Gain 18775914
dgv2099e1 CNV Complex 17122850
nsv888362 CNV Gain 21882294
nsv469664 CNV Loss 16826518
nsv831025 CNV Loss 17160897
esv2734660 CNV Deletion 23290073
esv26856 CNV Gain 19812545
nsv821246 CNV Deletion 20802225

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for STAG3L3 Gene

Disorders for STAG3L3 Gene

Relevant External Links for STAG3L3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STAG3L3

No disorders were found for STAG3L3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L3 Gene

Publications for STAG3L3 Gene

  1. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams- Beuren syndrome deletion. (PMID: 10698974) Pezzi N. … Barbero J.L. (FASEB J. 2000) 3

Products for STAG3L3 Gene

Sources for STAG3L3 Gene

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