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Aliases for STAG3L3 Gene

Aliases for STAG3L3 Gene

  • Stromal Antigen 3-Like 3 (Pseudogene) 2 3
  • Stromal Antigen 3-Like Protein 3 4
  • Stromal Antigen 3 Pseudogene 3
  • Stromal Antigen 3-Like 3 2
  • STAG3-Like Protein 3 3
  • STAG3L3P 3
  • STAG3L1 3
  • STAG3L2 3

External Ids for STAG3L3 Gene

Previous GeneCards Identifiers for STAG3L3 Gene

  • GC07M072109
  • GC07M072440
  • GC07M071801

Summaries for STAG3L3 Gene

GeneCards Summary for STAG3L3 Gene

STAG3L3 (Stromal Antigen 3-Like 3 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L3 Gene

Genomics for STAG3L3 Gene

Regulatory Elements for STAG3L3 Gene

Genomic Location for STAG3L3 Gene

Start:
72,969,696 bp from pter
End:
73,005,943 bp from pter
Size:
36,248 bases
Orientation:
Minus strand

Genomic View for STAG3L3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for STAG3L3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L3 Gene

Proteins for STAG3L3 Gene

  • Protein details for STAG3L3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CL85-ST3L3_HUMAN
    Recommended name:
    STAG3-like protein 3
    Protein Accession:
    P0CL85
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L3 Gene

    Size:
    134 amino acids
    Molecular mass:
    15609 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for STAG3L3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for STAG3L3 Gene

Proteomics data for STAG3L3 Gene at MOPED

Post-translational modifications for STAG3L3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAG3L3 Gene

Domains for STAG3L3 Gene

Protein Domains for STAG3L3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for STAG3L3 Gene

Graphical View of Domain Structure for InterPro Entry

P0CL85

UniProtKB/Swiss-Prot:

ST3L3_HUMAN :
  • P0CL85
Domain:
  • Contains 1 SCD (stromalin conservative) domain.
Family:
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L3: view

No data available for Gene Families for STAG3L3 Gene

Function for STAG3L3 Gene

Animal Model Products

miRNA for STAG3L3 Gene

miRTarBase miRNAs that target STAG3L3

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for STAG3L3

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for STAG3L3 Gene

Localization for STAG3L3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for STAG3L3 Gene COMPARTMENTS Subcellular localization image for STAG3L3 gene
Compartment Confidence
mitochondrion 3
nucleus 2
cytosol 1

Gene Ontology (GO) - Cellular Components for STAG3L3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with STAG3L3: view

Pathways for STAG3L3 Gene

SuperPathways for STAG3L3 Gene

No Data Available

Interacting Proteins for STAG3L3 Gene

Gene Ontology (GO) - Biological Process for STAG3L3 Gene

None

No data available for Pathways by source for STAG3L3 Gene

Transcripts for STAG3L3 Gene

mRNA/cDNA for STAG3L3 Gene

(1) REFSEQ mRNAs :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for STAG3L3

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for STAG3L3
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L3 Gene

No ASD Table

Relevant External Links for STAG3L3 Gene

GeneLoc Exon Structure for
STAG3L3
ECgene alternative splicing isoforms for
STAG3L3

Expression for STAG3L3 Gene

mRNA expression in normal human tissues for STAG3L3 Gene

genes like me logo Genes that share expressions with STAG3L3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for STAG3L3 Gene

Orthologs for STAG3L3 Gene

Evolution for STAG3L3 Gene

ENSEMBL:
Gene Tree for STAG3L3 (if available)
TreeFam:
Gene Tree for STAG3L3 (if available)

No data available for Orthologs for STAG3L3 Gene

Paralogs for STAG3L3 Gene

Selected SIMAP similar genes for STAG3L3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STAG3L3: view

No data available for Paralogs for STAG3L3 Gene

Variants for STAG3L3 Gene

Sequence variations from dbSNP and Humsavar for STAG3L3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs397134 -- 72,999,753(-) GAGAC(A/G)GGTGG intron-variant
rs423491 -- 72,999,769(+) GAAGC(A/G)GCCAG nc-transcript-variant
rs2523281 -- 72,997,989(+) cgggc(A/G)cctgt nc-transcript-variant
rs2527273 -- 73,004,659(+) GAGAC(A/T)TGGTT intron-variant
rs2539048 -- 73,006,960(-) GGCAA(A/G)TGTAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for STAG3L3 Gene

Variant ID Type Subtype PubMed ID
dgv2095e1 CNV Complex 17122850
nsv520573 CNV Gain+Loss 19592680
esv34349 CNV Gain 17911159
dgv2098e1 CNV Complex 17122850
nsv428171 CNV Gain 18775914
dgv2099e1 CNV Complex 17122850
nsv888362 CNV Gain 21882294
nsv469664 CNV Loss 16826518
nsv831025 CNV Loss 17160897
esv2734660 CNV Deletion 23290073
esv26856 CNV Gain 19812545
nsv821246 CNV Deletion 20802225

Relevant External Links for STAG3L3 Gene

HapMap Linkage Disequilibrium report
STAG3L3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for STAG3L3 Gene

Disorders for STAG3L3 Gene

No disorders were found for STAG3L3 Gene.

No data available for UniProtKB/Swiss-Prot for STAG3L3 Gene

Publications for STAG3L3 Gene

  1. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams- Beuren syndrome deletion. (PMID: 10698974) Pezzi N. … Barbero J.L. (FASEB J. 2000) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4

Products for STAG3L3 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate STAG3L3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for STAG3L3
    • Block miRNA regulation of STAG3L3 using miScript Target Protectors

    Sources for STAG3L3 Gene

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