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Aliases for STAG3L2 Gene

Aliases for STAG3L2 Gene

  • Stromal Antigen 3-Like 2 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 2 4
  • Stromal Antigen 3-Like 2 2
  • STAG3-Like Protein 2 3
  • STAG3L2P 3
  • STAG3L3 3
  • STAG3L1 3

External Ids for STAG3L2 Gene

Previous GeneCards Identifiers for STAG3L2 Gene

  • GC07M073914
  • GC07M073938
  • GC07M074112
  • GC07M073632
  • GC07M074299

Summaries for STAG3L2 Gene

GeneCards Summary for STAG3L2 Gene

STAG3L2 (Stromal Antigen 3-Like 2 (Pseudogene)) is a Pseudogene.

Additional gene information for STAG3L2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L2 Gene

Genomics for STAG3L2 Gene

GeneHancer (GH) Regulatory Elements for STAG3L2 Gene

Promoters and enhancers for STAG3L2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I074889 Promoter/Enhancer 1.4 Ensembl ENCODE 560.6 +0.2 211 2.4 ATF1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF48 POLR2B GLIS2 ATF7 STAG3L2 PMS2P5 SPDYE12P GTF2IRD2
GH07I074653 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.9 +231.3 231281 11.3 CLOCK MLX ZFP64 DMAP1 YY1 ZNF143 SP3 NFYC SSRP1 ZNF610 GTF2I GC07P074660 STAG3L2 NSUN5P1 PMS2P3 PMS2P2 PMS2P5 SPDYE12P GTF2IRD2 LAT2
GH07I074648 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 13.7 +240.5 240528 2.6 HDGF ATF1 IRF4 TCF12 RUNX3 NCOA1 MEF2D ATF4 SMARCA4 ZNF184 STAG3L2 LAT2 PMS2P2 SPDYE12P GTF2IRD2 GTF2IRD2B GTF2I ENSG00000279005
GH07I074611 Enhancer 1 Ensembl ENCODE 6.3 +278.2 278239 1.2 NFIB KLF17 FEZF1 ZNF335 ZNF121 GLIS2 ZNF366 ZSCAN5C ZNF680 SMARCC1 PMS2P3 PMS2P5 STAG3L2 ENSG00000273069 GC07P074635
GH07I074908 Enhancer 0.4 Ensembl 12.3 -18.3 -18289 0.6 GABPB1 ZBTB40 PMS2P5 STAG3L2 SPDYE12P ENSG00000239069
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STAG3L2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the STAG3L2 gene promoter:

Genomic Locations for STAG3L2 Gene

Genomic Locations for STAG3L2 Gene
8,623 bases
Minus strand

Genomic View for STAG3L2 Gene

Genes around STAG3L2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L2 Gene

Proteins for STAG3L2 Gene

  • Protein details for STAG3L2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative STAG3-like protein 2
    Protein Accession:
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L2 Gene

    134 amino acids
    Molecular mass:
    15630 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for STAG3L2 Gene


neXtProt entry for STAG3L2 Gene

Post-translational modifications for STAG3L2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAG3L2 Gene

Domains & Families for STAG3L2 Gene

Protein Domains for STAG3L2 Gene


Suggested Antigen Peptide Sequences for STAG3L2 Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the SCC3 family.
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L2: view

No data available for Gene Families for STAG3L2 Gene

Function for STAG3L2 Gene

Phenotypes for STAG3L2 Gene

GenomeRNAi human phenotypes for STAG3L2:
genes like me logo Genes that share phenotypes with STAG3L2: view

miRNA for STAG3L2 Gene

miRTarBase miRNAs that target STAG3L2

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for STAG3L2 Gene

Localization for STAG3L2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L2 Gene

Gene Ontology (GO) - Cellular Components for STAG3L2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with STAG3L2: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for STAG3L2 Gene

Pathways & Interactions for STAG3L2 Gene

SuperPathways for STAG3L2 Gene

No Data Available

Interacting Proteins for STAG3L2 Gene

Gene Ontology (GO) - Biological Process for STAG3L2 Gene


No data available for Pathways by source and SIGNOR curated interactions for STAG3L2 Gene

Drugs & Compounds for STAG3L2 Gene

No Compound Related Data Available

Transcripts for STAG3L2 Gene

mRNA/cDNA for STAG3L2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STAG3L2 Gene

Stromal antigen 3-like 2:
Representative Sequences:

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Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L2 Gene

No ASD Table

Relevant External Links for STAG3L2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for STAG3L2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STAG3L2 Gene

NURSA nuclear receptor signaling pathways regulating expression of STAG3L2 Gene:


SOURCE GeneReport for Unigene cluster for STAG3L2 Gene:

genes like me logo Genes that share expression patterns with STAG3L2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAG3L2 Gene

Orthologs for STAG3L2 Gene

Evolution for STAG3L2 Gene

Gene Tree for STAG3L2 (if available)
Gene Tree for STAG3L2 (if available)

No data available for Orthologs for STAG3L2 Gene

Paralogs for STAG3L2 Gene

(11) SIMAP similar genes for STAG3L2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STAG3L2: view

No data available for Paralogs for STAG3L2 Gene

Variants for STAG3L2 Gene

Sequence variations from dbSNP and Humsavar for STAG3L2 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1062273 -- 74,882,271(-) C/G/T non_coding_transcript_variant
rs1071635 -- 74,883,265(-) C/T intron_variant
rs112148262 -- 74,886,259(-) G/A intron_variant
rs112560876 -- 74,890,452(-) G/A non_coding_transcript_variant
rs113198378 -- 74,884,170(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L2 Gene

Variant ID Type Subtype PubMed ID
esv24294 CNV gain 19812545
esv2761338 CNV gain 21179565
nsv1032137 CNV gain 25217958
nsv7402 OTHER inversion 18451855
nsv971396 CNV duplication 23825009
nsv981528 CNV duplication 23825009

Additional Variant Information for STAG3L2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L2 Gene

Disorders for STAG3L2 Gene

Additional Disease Information for STAG3L2

No disorders were found for STAG3L2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L2 Gene

Publications for STAG3L2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams-Beuren syndrome deletion. (PMID: 10698974) Pezzi N … Barbero JL (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2000) 3 58

Products for STAG3L2 Gene

Sources for STAG3L2 Gene

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