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Aliases for STAG3L2 Gene

Aliases for STAG3L2 Gene

  • Stromal Antigen 3-Like 2 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 2 4
  • Stromal Antigen 3-Like 2 2
  • STAG3-Like Protein 2 3
  • STAG3L2P 3
  • STAG3L3 3
  • STAG3L1 3

External Ids for STAG3L2 Gene

Previous GeneCards Identifiers for STAG3L2 Gene

  • GC07M073914
  • GC07M073938
  • GC07M074112
  • GC07M073632
  • GC07M074299

Summaries for STAG3L2 Gene

GeneCards Summary for STAG3L2 Gene

STAG3L2 (Stromal Antigen 3-Like 2 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L2 Gene

Genomics for STAG3L2 Gene

Regulatory Elements for STAG3L2 Gene

Enhancers for STAG3L2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G074653 1.8 FANTOM5 ENCODE dbSUPER 13.9 +231.3 231282 11.3 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 ZNF143 ZNF263 MCM3 SP3 STAG3L2 PMS2P2 PMS2P5 SPDYE12P GTF2IRD2 GTF2I LAT2 GC07P074660
GH07G074648 1.8 FANTOM5 Ensembl ENCODE dbSUPER 13.7 +240.5 240528 2.6 HDGF ATF1 ZNF48 TCF12 GATA2 NCOA1 TBX21 MEF2D SMARCA4 PBX2 STAG3L2 LAT2 PMS2P2 SPDYE12P GTF2IRD2 GTF2IRD2B GTF2I ENSG00000279005
GH07G075105 1.1 dbSUPER 8.6 -215.5 -215501 1.8 HNRNPUL1 HDGF PKNOX1 CREB3L1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 STAG3L1 MIR590 NSUN5P1 RFC2 STAG3L2 GTF2IRD2B GC07P075127
GH07G074611 1.2 Ensembl ENCODE 6.3 +278.2 278240 1.2 NFIB RB1 KLF17 FEZF1 RAD21 ZNF335 ZNF121 GLIS2 ZNF366 ZSCAN5C PMS2P5 STAG3L2 ENSG00000273069 GC07P074635
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STAG3L2 on UCSC Golden Path with GeneCards custom track

Promoters for STAG3L2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000213694 212 2401 ATF1 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF48 GLIS2 ZNF143

Genomic Location for STAG3L2 Gene

74,881,990 bp from pter
74,890,612 bp from pter
8,623 bases
Minus strand

Genomic View for STAG3L2 Gene

Genes around STAG3L2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L2 Gene

Proteins for STAG3L2 Gene

  • Protein details for STAG3L2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative STAG3-like protein 2
    Protein Accession:
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L2 Gene

    134 amino acids
    Molecular mass:
    15630 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for STAG3L2 Gene


neXtProt entry for STAG3L2 Gene

Post-translational modifications for STAG3L2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L2 Gene

Domains & Families for STAG3L2 Gene

Protein Domains for STAG3L2 Gene


Suggested Antigen Peptide Sequences for STAG3L2 Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the SCC3 family.
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L2: view

No data available for Gene Families for STAG3L2 Gene

Function for STAG3L2 Gene

Phenotypes for STAG3L2 Gene

GenomeRNAi human phenotypes for STAG3L2:
genes like me logo Genes that share phenotypes with STAG3L2: view

Animal Model Products

miRNA for STAG3L2 Gene

miRTarBase miRNAs that target STAG3L2

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for STAG3L2 Gene

Localization for STAG3L2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L2 Gene

Gene Ontology (GO) - Cellular Components for STAG3L2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with STAG3L2: view

No data available for Subcellular locations from COMPARTMENTS for STAG3L2 Gene

Pathways & Interactions for STAG3L2 Gene

SuperPathways for STAG3L2 Gene

No Data Available

Interacting Proteins for STAG3L2 Gene

Gene Ontology (GO) - Biological Process for STAG3L2 Gene


No data available for Pathways by source and SIGNOR curated interactions for STAG3L2 Gene

Drugs & Compounds for STAG3L2 Gene

No Compound Related Data Available

Transcripts for STAG3L2 Gene

mRNA/cDNA for STAG3L2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STAG3L2 Gene

Stromal antigen 3-like 2:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L2 Gene

No ASD Table

Relevant External Links for STAG3L2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for STAG3L2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STAG3L2 Gene

NURSA nuclear receptor signaling pathways regulating expression of STAG3L2 Gene:


SOURCE GeneReport for Unigene cluster for STAG3L2 Gene:

genes like me logo Genes that share expression patterns with STAG3L2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAG3L2 Gene

Orthologs for STAG3L2 Gene

Evolution for STAG3L2 Gene

Gene Tree for STAG3L2 (if available)
Gene Tree for STAG3L2 (if available)

No data available for Orthologs for STAG3L2 Gene

Paralogs for STAG3L2 Gene

(11) SIMAP similar genes for STAG3L2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STAG3L2: view

No data available for Paralogs for STAG3L2 Gene

Variants for STAG3L2 Gene

Sequence variations from dbSNP and Humsavar for STAG3L2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1062273 -- 74,882,271(+) AGGGA(C/G/T)GGTTA nc-transcript-variant
rs1071635 -- 74,883,265(-) gccca(A/G)cactt intron-variant
rs112148262 -- 74,886,259(+) CTGGA(A/G)TGCCG intron-variant
rs112560876 -- 74,890,452(+) GGTCG(A/G)AAACC nc-transcript-variant, upstream-variant-2KB
rs113198378 -- 74,884,170(+) CTGAC(A/G)GCCTC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L2 Gene

Variant ID Type Subtype PubMed ID
esv24294 CNV gain 19812545
esv2761338 CNV gain 21179565
nsv1032137 CNV gain 25217958
nsv7402 OTHER inversion 18451855
nsv971396 CNV duplication 23825009
nsv981528 CNV duplication 23825009

Relevant External Links for STAG3L2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L2 Gene

Disorders for STAG3L2 Gene

Relevant External Links for STAG3L2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for STAG3L2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L2 Gene

Publications for STAG3L2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  5. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams- Beuren syndrome deletion. (PMID: 10698974) Pezzi N. … Barbero J.L. (FASEB J. 2000) 3 64

Products for STAG3L2 Gene

Sources for STAG3L2 Gene

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