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Aliases for STAG3L2 Gene

Aliases for STAG3L2 Gene

  • Stromal Antigen 3-Like 2 (Pseudogene) 2 3
  • Stromal Antigen 3-Like Protein 2 4
  • Stromal Antigen 3-Like 2 2
  • STAG3-Like Protein 2 3
  • STAG3L2P 3
  • STAG3L1 3
  • STAG3L3 3

External Ids for STAG3L2 Gene

Previous GeneCards Identifiers for STAG3L2 Gene

  • GC07M073914
  • GC07M073938
  • GC07M074112
  • GC07M073632
  • GC07M074299

Summaries for STAG3L2 Gene

GeneCards Summary for STAG3L2 Gene

STAG3L2 (Stromal Antigen 3-Like 2 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L2 Gene

Genomics for STAG3L2 Gene

Regulatory Elements for STAG3L2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for STAG3L2 Gene

Start:
74,881,990 bp from pter
End:
74,890,612 bp from pter
Size:
8,623 bases
Orientation:
Minus strand

Genomic View for STAG3L2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for STAG3L2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L2 Gene

Proteins for STAG3L2 Gene

  • Protein details for STAG3L2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CL84-ST3L2_HUMAN
    Recommended name:
    Putative STAG3-like protein 2
    Protein Accession:
    P0CL84
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L2 Gene

    Size:
    134 amino acids
    Molecular mass:
    15630 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for STAG3L2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for STAG3L2 Gene

Proteomics data for STAG3L2 Gene at MOPED

Post-translational modifications for STAG3L2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAG3L2 Gene

Domains for STAG3L2 Gene

Protein Domains for STAG3L2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for STAG3L2 Gene

Graphical View of Domain Structure for InterPro Entry

P0CL84

UniProtKB/Swiss-Prot:

ST3L2_HUMAN :
  • P0CL84
Domain:
  • Contains 1 SCD (stromalin conservative) domain.
Family:
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L2: view

No data available for Gene Families for STAG3L2 Gene

Function for STAG3L2 Gene

Animal Model Products

miRNA for STAG3L2 Gene

miRTarBase miRNAs that target STAG3L2

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for STAG3L2

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for STAG3L2 Gene

Localization for STAG3L2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for STAG3L2 Gene COMPARTMENTS Subcellular localization image for STAG3L2 gene
Compartment Confidence
mitochondrion 3
nucleus 2
cytosol 1

Gene Ontology (GO) - Cellular Components for STAG3L2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with STAG3L2: view

Pathways for STAG3L2 Gene

SuperPathways for STAG3L2 Gene

No Data Available

Interacting Proteins for STAG3L2 Gene

Gene Ontology (GO) - Biological Process for STAG3L2 Gene

None

No data available for Pathways by source for STAG3L2 Gene

Transcripts for STAG3L2 Gene

mRNA/cDNA for STAG3L2 Gene

(2) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STAG3L2 Gene

Stromal antigen 3-like 2:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for STAG3L2

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for STAG3L2
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L2 Gene

No ASD Table

Relevant External Links for STAG3L2 Gene

GeneLoc Exon Structure for
STAG3L2
ECgene alternative splicing isoforms for
STAG3L2

Expression for STAG3L2 Gene

mRNA expression in normal human tissues for STAG3L2 Gene

SOURCE GeneReport for Unigene cluster for STAG3L2 Gene Hs.666638

genes like me logo Genes that share expressions with STAG3L2: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for STAG3L2 Gene

Orthologs for STAG3L2 Gene

Evolution for STAG3L2 Gene

ENSEMBL:
Gene Tree for STAG3L2 (if available)
TreeFam:
Gene Tree for STAG3L2 (if available)

No data available for Orthologs for STAG3L2 Gene

Paralogs for STAG3L2 Gene

Selected SIMAP similar genes for STAG3L2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STAG3L2: view

No data available for Paralogs for STAG3L2 Gene

Variants for STAG3L2 Gene

Sequence variations from dbSNP and Humsavar for STAG3L2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1635764 -- 74,882,751(-) GTGAT(A/G)TGCAG nc-transcript-variant
rs1635765 -- 74,881,725(-) TGGCA(C/T)ATGCC downstream-variant-500B
rs1859227 -- 74,884,789(+) CATTG(G/T)AAAGT intron-variant
rs2258406 -- 74,881,912(+) gagtt(C/T)gagac downstream-variant-500B
rs2530482 -- 74,884,776(+) AATAA(A/C)TCTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L2 Gene

Variant ID Type Subtype PubMed ID
dgv2100e1 CNV Complex 17122850
nsv888380 CNV Loss 21882294
essv21300 CNV CNV 17122850
nsv888381 CNV Gain 21882294
nsv7402 OTHER Inversion 18451855
nsv888382 CNV Gain 21882294
esv24294 CNV Gain 19812545

Relevant External Links for STAG3L2 Gene

HapMap Linkage Disequilibrium report
STAG3L2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for STAG3L2 Gene

Disorders for STAG3L2 Gene

No disorders were found for STAG3L2 Gene.

No data available for UniProtKB/Swiss-Prot for STAG3L2 Gene

Publications for STAG3L2 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams- Beuren syndrome deletion. (PMID: 10698974) Pezzi N. … Barbero J.L. (FASEB J. 2000) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for STAG3L2 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate STAG3L2
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for STAG3L2
    • Block miRNA regulation of STAG3L2 using miScript Target Protectors

    Sources for STAG3L2 Gene

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