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Aliases for STAG3L2 Gene

Aliases for STAG3L2 Gene

  • Stromal Antigen 3-Like 2 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 2 4
  • Stromal Antigen 3-Like 2 2
  • STAG3-Like Protein 2 3
  • STAG3L2P 3
  • STAG3L3 3
  • STAG3L1 3

External Ids for STAG3L2 Gene

Previous GeneCards Identifiers for STAG3L2 Gene

  • GC07M073914
  • GC07M073938
  • GC07M074112
  • GC07M073632
  • GC07M074299

Summaries for STAG3L2 Gene

GeneCards Summary for STAG3L2 Gene

STAG3L2 (Stromal Antigen 3-Like 2 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L2 Gene

Genomics for STAG3L2 Gene

Regulatory Elements for STAG3L2 Gene

Enhancers for STAG3L2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around STAG3L2 on UCSC Golden Path with GeneCards custom track

Promoters for STAG3L2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around STAG3L2 on UCSC Golden Path with GeneCards custom track

Genomic Location for STAG3L2 Gene

74,881,990 bp from pter
74,890,612 bp from pter
8,623 bases
Minus strand

Genomic View for STAG3L2 Gene

Genes around STAG3L2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L2 Gene

Proteins for STAG3L2 Gene

  • Protein details for STAG3L2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative STAG3-like protein 2
    Protein Accession:
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L2 Gene

    134 amino acids
    Molecular mass:
    15630 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for STAG3L2 Gene


neXtProt entry for STAG3L2 Gene

Proteomics data for STAG3L2 Gene at MOPED

Post-translational modifications for STAG3L2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L2 Gene

Domains & Families for STAG3L2 Gene

Protein Domains for STAG3L2 Gene


Suggested Antigen Peptide Sequences for STAG3L2 Gene

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 SCD (stromalin conservative) domain.
  • Belongs to the SCC3 family.
  • Contains 1 SCD (stromalin conservative) domain.
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L2: view

No data available for Gene Families for STAG3L2 Gene

Function for STAG3L2 Gene

miRNA for STAG3L2 Gene

miRTarBase miRNAs that target STAG3L2

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for STAG3L2 Gene

Localization for STAG3L2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L2 Gene

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STAG3L2 Gene

Pathways & Interactions for STAG3L2 Gene

SuperPathways for STAG3L2 Gene

No Data Available

Interacting Proteins for STAG3L2 Gene

Gene Ontology (GO) - Biological Process for STAG3L2 Gene


No data available for Pathways by source and SIGNOR curated interactions for STAG3L2 Gene

Drugs & Compounds for STAG3L2 Gene

No Compound Related Data Available

Transcripts for STAG3L2 Gene

mRNA/cDNA for STAG3L2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STAG3L2 Gene

Stromal antigen 3-like 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L2 Gene

No ASD Table

Relevant External Links for STAG3L2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for STAG3L2 Gene

mRNA expression in normal human tissues for STAG3L2 Gene

SOURCE GeneReport for Unigene cluster for STAG3L2 Gene Hs.666638

genes like me logo Genes that share expression patterns with STAG3L2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for STAG3L2 Gene

Orthologs for STAG3L2 Gene

Evolution for STAG3L2 Gene

Gene Tree for STAG3L2 (if available)
Gene Tree for STAG3L2 (if available)

No data available for Orthologs for STAG3L2 Gene

Paralogs for STAG3L2 Gene

(11) SIMAP similar genes for STAG3L2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STAG3L2: view

No data available for Paralogs for STAG3L2 Gene

Variants for STAG3L2 Gene

Sequence variations from dbSNP and Humsavar for STAG3L2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1062273 -- 74,882,271(+) AGGGA(C/G/T)GGTTA nc-transcript-variant
rs1071635 -- 74,883,265(-) gccca(A/G)cactt intron-variant
rs1635764 -- 74,882,751(-) GTGAT(A/G)TGCAG nc-transcript-variant
rs1635765 -- 74,881,725(-) TGGCA(C/T)ATGCC downstream-variant-500B
rs1807259 -- 74,883,297(+) cccag(A/C)cCACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L2 Gene

Variant ID Type Subtype PubMed ID
dgv2100e1 CNV Complex 17122850
nsv888380 CNV Loss 21882294
essv21300 CNV CNV 17122850
nsv888381 CNV Gain 21882294
nsv7402 OTHER Inversion 18451855
nsv888382 CNV Gain 21882294
esv24294 CNV Gain 19812545

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for STAG3L2 Gene

Disorders for STAG3L2 Gene

Relevant External Links for STAG3L2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for STAG3L2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L2 Gene

Publications for STAG3L2 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams- Beuren syndrome deletion. (PMID: 10698974) Pezzi N. … Barbero J.L. (FASEB J. 2000) 3

Products for STAG3L2 Gene

Sources for STAG3L2 Gene