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Aliases for STAG3L1 Gene

Aliases for STAG3L1 Gene

  • Stromal Antigen 3-Like 1 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 1 4
  • Stromal Antigen 3-Like 1 2
  • STAG3-Like Protein 1 3
  • STAG3L1P 3
  • STAG3L2 3
  • STAG3L3 3

External Ids for STAG3L1 Gene

Previous GeneCards Identifiers for STAG3L1 Gene

  • GC07P074827
  • GC07P074988
  • GC07P074321

Summaries for STAG3L1 Gene

GeneCards Summary for STAG3L1 Gene

STAG3L1 (Stromal Antigen 3-Like 1 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L1 Gene

Genomics for STAG3L1 Gene

Regulatory Elements for STAG3L1 Gene

Enhancers for STAG3L1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G074472 1.9 FANTOM5 Ensembl ENCODE dbSUPER 35.4 -880.4 -880374 11.7 PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 YBX1 YY1 ZNF766 FOS BAZ1B STAG3L1 MIR590 GTF2IRD2 BUD23 METTL27 GTF2IRD1 NSUN5P1 LOC101926943 RNA5SP233
GH07G076280 1 dbSUPER 45.6 +922.9 922892 2.9 HDGF ARNT SIN3A YBX1 GLI4 ZNF2 ZNF48 GLIS2 ZNF302 KLF7 FAM185BP STAG3L1 SPDYE18 LOC100422695 NSUN5P1 ENSG00000250990 SRRM3 LOC100133091 STYXL1 UPK3B
GH07G076008 1.6 Ensembl ENCODE dbSUPER 27 +651.5 651457 4.6 SIN3A ZNF2 ZBTB7B ZNF766 ZNF207 ZNF263 REST TBX21 SMARCA4 GLIS1 STYXL1 STAG3L1 NSUN5P1 DTX2P1 MDH2 ENSG00000230882 SNORA14A POR RHBDD2 CCL24
GH07G076301 1.7 Ensembl ENCODE dbSUPER 23.4 +947.6 947556 10.2 CREB3L1 ZFP64 FEZF1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D GLIS1 SPDYE18 STAG3L1 PMS2P9 DTX2P1 FAM185BP POMZP3 SPDYE17 NSUN5P1 LOC100133091 LOC100422695
GH07G076313 1.6 Ensembl ENCODE dbSUPER 21.4 +955.1 955145 1.4 HDGF PKNOX1 MLX CREB3L1 ARNT WRNIP1 ZFP64 ARID4B SIN3A ZNF2 FAM185BP SPDYE18 STAG3L1 POMZP3 SPDYE17 LOC100422695 SRRM3 ENSG00000250990 CCL26 UPK3B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STAG3L1 on UCSC Golden Path with GeneCards custom track

Promoters for STAG3L1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000213747 100 2201 NRF1 MAFG ZNF384 ZNF121 MAFF ZNF316 POLR2A BCL11A ZNF629 EMSY

Genomic Location for STAG3L1 Gene

75,359,194 bp from pter
75,395,383 bp from pter
36,190 bases
Plus strand

Genomic View for STAG3L1 Gene

Genes around STAG3L1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L1 Gene

Proteins for STAG3L1 Gene

  • Protein details for STAG3L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative STAG3-like protein 1
    Protein Accession:
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L1 Gene

    205 amino acids
    Molecular mass:
    23775 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STAG3L1 Gene

Post-translational modifications for STAG3L1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L1 Gene

Domains & Families for STAG3L1 Gene

Protein Domains for STAG3L1 Gene


Suggested Antigen Peptide Sequences for STAG3L1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the SCC3 family.
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L1: view

No data available for Gene Families for STAG3L1 Gene

Function for STAG3L1 Gene

Phenotypes for STAG3L1 Gene

GenomeRNAi human phenotypes for STAG3L1:
genes like me logo Genes that share phenotypes with STAG3L1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L1 Gene

Localization for STAG3L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L1 Gene

Gene Ontology (GO) - Cellular Components for STAG3L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with STAG3L1: view

No data available for Subcellular locations from COMPARTMENTS for STAG3L1 Gene

Pathways & Interactions for STAG3L1 Gene

SuperPathways for STAG3L1 Gene

No Data Available

Interacting Proteins for STAG3L1 Gene

Selected Interacting proteins: P0CL83-ST3L1_HUMAN for STAG3L1 Gene via IID

Symbol External ID(s) Details

Gene Ontology (GO) - Biological Process for STAG3L1 Gene


No data available for Pathways by source and SIGNOR curated interactions for STAG3L1 Gene

Drugs & Compounds for STAG3L1 Gene

No Compound Related Data Available

Transcripts for STAG3L1 Gene

mRNA/cDNA for STAG3L1 Gene

(2) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STAG3L1 Gene

Stromal antigen 3-like 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L1 Gene

No ASD Table

Relevant External Links for STAG3L1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for STAG3L1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STAG3L1 Gene

Protein differential expression in normal tissues from HIPED for STAG3L1 Gene

This gene is overexpressed in Monocytes (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for STAG3L1 Gene

Protein tissue co-expression partners for STAG3L1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of STAG3L1 Gene:


SOURCE GeneReport for Unigene cluster for STAG3L1 Gene:

genes like me logo Genes that share expression patterns with STAG3L1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAG3L1 Gene

Orthologs for STAG3L1 Gene

Evolution for STAG3L1 Gene

Gene Tree for STAG3L1 (if available)
Gene Tree for STAG3L1 (if available)

No data available for Orthologs for STAG3L1 Gene

Paralogs for STAG3L1 Gene

genes like me logo Genes that share paralogs with STAG3L1: view

No data available for Paralogs for STAG3L1 Gene

Variants for STAG3L1 Gene

Sequence variations from dbSNP and Humsavar for STAG3L1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs111764150 -- 75,366,640(+) GATGG(A/T)GAAGG intron-variant
rs113221595 -- 75,357,596(+) AACCT(A/C)CATGA intron-variant, upstream-variant-2KB
rs199748033 -- 75,362,037(+) GAGCC(A/C)CCAGC nc-transcript-variant
rs200102902 -- 75,365,085(+) TTTTT(C/T)TTTTA intron-variant
rs200156902 -- 75,365,324(+) CCGCA(C/T)GCCTG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L1 Gene

Variant ID Type Subtype PubMed ID
nsv528969 CNV gain 19592680
nsv831035 CNV loss 17160897
nsv967341 CNV duplication 23825009
nsv981534 CNV duplication 23825009

Relevant External Links for STAG3L1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L1 Gene

Disorders for STAG3L1 Gene

Relevant External Links for STAG3L1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for STAG3L1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L1 Gene

Publications for STAG3L1 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  5. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams- Beuren syndrome deletion. (PMID: 10698974) Pezzi N. … Barbero J.L. (FASEB J. 2000) 3 64

Products for STAG3L1 Gene

Sources for STAG3L1 Gene

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