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Aliases for STAG3L1 Gene

Aliases for STAG3L1 Gene

  • Stromal Antigen 3-Like 1 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 1 4
  • Stromal Antigen 3-Like 1 2
  • STAG3-Like Protein 1 3
  • STAG3L1P 3
  • STAG3L2 3
  • STAG3L3 3

External Ids for STAG3L1 Gene

Previous GeneCards Identifiers for STAG3L1 Gene

  • GC07P074827
  • GC07P074988
  • GC07P074321

Summaries for STAG3L1 Gene

GeneCards Summary for STAG3L1 Gene

STAG3L1 (Stromal Antigen 3-Like 1 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L1 Gene

Genomics for STAG3L1 Gene

Regulatory Elements for STAG3L1 Gene

Enhancers for STAG3L1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F074635 1.6 FANTOM5 Ensembl ENCODE 50.5 -723.2 -723178 2.0 PKNOX1 ZFP64 ARID4B SIN3A YBX1 ZNF48 FOS ZNF202 REST PPARG STAG3L1 MIR590 WBSCR27 NSUN5P1 GTF2IRD2 WBSCR22 LOC101926943 PMS2P5 TRIM73 PMS2P2
GH07F076301 1.4 Ensembl ENCODE 50.9 +947.6 947556 10.2 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 YY1 SLC30A9 STAG3L1 SPDYE18 NSUN5P1 SPDYE17 LOC100133091 FAM185BP LOC100422695 PMS2P9 DTX2P1 TRIM73
GH07F074472 1.6 FANTOM5 Ensembl ENCODE 37.6 -880.4 -880374 11.7 PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 YBX1 FOS JUNB ZHX2 STAG3L1 BAZ1B WBSCR27 NSUN5P1 GTF2IRD2 MIR590 LOC101926943 GTF2IRD1 WBSCR22 TRIM73
GH07F076313 1.4 Ensembl ENCODE 37.6 +955.1 955145 1.4 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A ZNF2 YY1 STAG3L1 FAM185BP SPDYE17 SPDYE18 POMZP3 DTX2P1 PMS2P9 LOC100422695 SRRM3 ENSG00000250990
GH07F076290 1.8 FANTOM5 Ensembl ENCODE 23.4 +935.4 935361 8.9 PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 STAG3L1 SRRM3 POMZP3 FAM185BP SPDYE18 ENSG00000250778 STYXL1 ZP3 LOC100133091 RHBDD2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STAG3L1 on UCSC Golden Path with GeneCards custom track

Promoters for STAG3L1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000628499 206 2401 NRF1 MAFG ZNF384 ZNF121 ZNF316 MAFF BCL11A POLR2A MAFK EMSY

Genomic Location for STAG3L1 Gene

75,359,194 bp from pter
75,395,383 bp from pter
36,190 bases
Plus strand

Genomic View for STAG3L1 Gene

Genes around STAG3L1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L1 Gene

Proteins for STAG3L1 Gene

  • Protein details for STAG3L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative STAG3-like protein 1
    Protein Accession:
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L1 Gene

    205 amino acids
    Molecular mass:
    23775 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STAG3L1 Gene

Post-translational modifications for STAG3L1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L1 Gene

Domains & Families for STAG3L1 Gene

Protein Domains for STAG3L1 Gene


Suggested Antigen Peptide Sequences for STAG3L1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 SCD (stromalin conservative) domain.
  • Belongs to the SCC3 family.
  • Contains 1 SCD (stromalin conservative) domain.
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L1: view

No data available for Gene Families for STAG3L1 Gene

Function for STAG3L1 Gene

Phenotypes for STAG3L1 Gene

GenomeRNAi human phenotypes for STAG3L1:
genes like me logo Genes that share phenotypes with STAG3L1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L1 Gene

Localization for STAG3L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L1 Gene

Gene Ontology (GO) - Cellular Components for STAG3L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with STAG3L1: view

No data available for Subcellular locations from COMPARTMENTS for STAG3L1 Gene

Pathways & Interactions for STAG3L1 Gene

SuperPathways for STAG3L1 Gene

No Data Available

Interacting Proteins for STAG3L1 Gene

Selected Interacting proteins: P0CL83-ST3L1_HUMAN for STAG3L1 Gene via IID

Symbol External ID(s) Details

Gene Ontology (GO) - Biological Process for STAG3L1 Gene


No data available for Pathways by source and SIGNOR curated interactions for STAG3L1 Gene

Transcripts for STAG3L1 Gene

mRNA/cDNA for STAG3L1 Gene

(2) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STAG3L1 Gene

Stromal antigen 3-like 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L1 Gene

No ASD Table

Relevant External Links for STAG3L1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for STAG3L1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for STAG3L1 Gene

Protein differential expression in normal tissues from HIPED for STAG3L1 Gene

This gene is overexpressed in Monocytes (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for STAG3L1 Gene

Protein tissue co-expression partners for STAG3L1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of STAG3L1 Gene:


SOURCE GeneReport for Unigene cluster for STAG3L1 Gene:

genes like me logo Genes that share expression patterns with STAG3L1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for STAG3L1 Gene

Orthologs for STAG3L1 Gene

Evolution for STAG3L1 Gene

Gene Tree for STAG3L1 (if available)
Gene Tree for STAG3L1 (if available)

No data available for Orthologs for STAG3L1 Gene

Paralogs for STAG3L1 Gene

genes like me logo Genes that share paralogs with STAG3L1: view

No data available for Paralogs for STAG3L1 Gene

Variants for STAG3L1 Gene

Sequence variations from dbSNP and Humsavar for STAG3L1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs111764150 -- 75,366,640(+) GATGG(A/T)GAAGG intron-variant
rs113221595 -- 75,357,596(+) AACCT(A/C)CATGA intron-variant, upstream-variant-2KB
rs199748033 -- 75,362,037(+) GAGCC(A/C)CCAGC nc-transcript-variant
rs200102902 -- 75,365,085(+) TTTTT(C/T)TTTTA intron-variant
rs200156902 -- 75,365,324(+) CCGCA(C/T)GCCTG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L1 Gene

Variant ID Type Subtype PubMed ID
nsv528969 CNV gain 19592680
nsv831035 CNV loss 17160897
nsv967341 CNV duplication 23825009
nsv981534 CNV duplication 23825009

Relevant External Links for STAG3L1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L1 Gene

Disorders for STAG3L1 Gene

Relevant External Links for STAG3L1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for STAG3L1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L1 Gene

Publications for STAG3L1 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  5. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams- Beuren syndrome deletion. (PMID: 10698974) Pezzi N. … Barbero J.L. (FASEB J. 2000) 3 64

Products for STAG3L1 Gene

Sources for STAG3L1 Gene

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