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Aliases for STAG3L1 Gene

Aliases for STAG3L1 Gene

  • Stromal Antigen 3-Like 1 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 1 4
  • Stromal Antigen 3-Like 1 2
  • STAG3-Like Protein 1 3
  • STAG3L1P 3
  • STAG3L2 3
  • STAG3L3 3

External Ids for STAG3L1 Gene

Previous GeneCards Identifiers for STAG3L1 Gene

  • GC07P074827
  • GC07P074988
  • GC07P074321

Summaries for STAG3L1 Gene

GeneCards Summary for STAG3L1 Gene

STAG3L1 (Stromal Antigen 3-Like 1 (Pseudogene)) is a Pseudogene.

Additional gene information for STAG3L1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L1 Gene

Genomics for STAG3L1 Gene

GeneHancer (GH) Regulatory Elements for STAG3L1 Gene

Promoters and enhancers for STAG3L1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I075358 Promoter 0.9 Ensembl 550.8 +0.1 107 2.2 ATF1 NRF1 ZNF335 POLR2B POLR2A BCL11A ZNF629 PRDM4 SUPT5H PMS2P2 STAG3L1
GH07I076313 Enhancer 1.5 Ensembl ENCODE dbSUPER 66.2 +955.1 955145 1.4 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A ZNF2 IRF4 YY1 STAG3L1 PMS2P3 FAM185BP NSUN5P1 SPDYE18 SPDYE5 POMZP3 PMS2P9 SPDYE17 LOC100422695
GH07I074635 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 56.5 -723.2 -723158 2 PKNOX1 FOXA2 ZFP64 ARID4B SIN3A ZNF48 ETS1 FOS ZNF202 REST PMS2P3 STAG3L1 NSUN5P1 MIR590 SPDYE5 METTL27 GTF2IRD2 GTF2IRD2B LOC101926943 BUD23
GH07I076290 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 41.4 +935.4 935361 8.9 HNRNPUL1 PKNOX1 CLOCK FOXA2 ARNT ARID4B NEUROD1 SIN3A DMAP1 IRF4 STAG3L1 PMS2P3 FAM185BP POMZP3 PMS2P9 NSUN5P1 DTX2P1 SRRM3 DTX2 SPDYE18
GH07I075877 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 28.5 +519.9 519872 3.1 HDGF ARNT ARID4B SIN3A YBX1 DMAP1 ZNF2 YY1 SLC30A9 POLR2B RHBDD2 STAG3L1 PMS2P3 NSUN5P1 MDH2 SPDYE5 ENSG00000214243 CCL24 STYXL1 POR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STAG3L1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the STAG3L1 gene promoter:

Genomic Locations for STAG3L1 Gene

Genomic Locations for STAG3L1 Gene
chr7:75,359,194-75,395,383
(GRCh38/hg38)
Size:
36,190 bases
Orientation:
Plus strand
chr7:74,988,447-75,024,657
(GRCh37/hg19)

Genomic View for STAG3L1 Gene

Genes around STAG3L1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L1 Gene

Proteins for STAG3L1 Gene

  • Protein details for STAG3L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CL83-ST3L1_HUMAN
    Recommended name:
    Putative STAG3-like protein 1
    Protein Accession:
    P0CL83
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L1 Gene

    Size:
    205 amino acids
    Molecular mass:
    23775 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STAG3L1 Gene

Post-translational modifications for STAG3L1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAG3L1 Gene

Domains & Families for STAG3L1 Gene

Protein Domains for STAG3L1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for STAG3L1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0CL83

UniProtKB/Swiss-Prot:

ST3L1_HUMAN :
  • Belongs to the SCC3 family.
Family:
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L1: view

No data available for Gene Families for STAG3L1 Gene

Function for STAG3L1 Gene

Phenotypes From GWAS Catalog for STAG3L1 Gene

Phenotypes for STAG3L1 Gene

GenomeRNAi human phenotypes for STAG3L1:
genes like me logo Genes that share phenotypes with STAG3L1: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L1 Gene

Localization for STAG3L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L1 Gene

Gene Ontology (GO) - Cellular Components for STAG3L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with STAG3L1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for STAG3L1 Gene

Pathways & Interactions for STAG3L1 Gene

SuperPathways for STAG3L1 Gene

No Data Available

Interacting Proteins for STAG3L1 Gene

Selected Interacting proteins: P0CL83-ST3L1_HUMAN for STAG3L1 Gene via IID

Symbol External ID(s) Details
AGTRAP

Gene Ontology (GO) - Biological Process for STAG3L1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAG3L1 Gene

Drugs & Compounds for STAG3L1 Gene

No Compound Related Data Available

Transcripts for STAG3L1 Gene

mRNA/cDNA for STAG3L1 Gene

(2) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STAG3L1 Gene

Stromal antigen 3-like 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L1 Gene

No ASD Table

Relevant External Links for STAG3L1 Gene

GeneLoc Exon Structure for
STAG3L1
ECgene alternative splicing isoforms for
STAG3L1

Expression for STAG3L1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STAG3L1 Gene

Protein differential expression in normal tissues from HIPED for STAG3L1 Gene

This gene is overexpressed in Monocytes (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for STAG3L1 Gene



Protein tissue co-expression partners for STAG3L1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of STAG3L1 Gene:

STAG3L1

SOURCE GeneReport for Unigene cluster for STAG3L1 Gene:

Hs.632310
genes like me logo Genes that share expression patterns with STAG3L1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAG3L1 Gene

Orthologs for STAG3L1 Gene

Evolution for STAG3L1 Gene

ENSEMBL:
Gene Tree for STAG3L1 (if available)
TreeFam:
Gene Tree for STAG3L1 (if available)

No data available for Orthologs for STAG3L1 Gene

Paralogs for STAG3L1 Gene

genes like me logo Genes that share paralogs with STAG3L1: view

No data available for Paralogs for STAG3L1 Gene

Variants for STAG3L1 Gene

Sequence variations from dbSNP and Humsavar for STAG3L1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs111764150 -- 75,366,640(+) A/T intron_variant
rs113221595 -- 75,357,596(+) C/A upstream_transcript_variant
rs1179748 -- 75,368,167(+) T/C downstream_transcript_variant
rs199748033 -- 75,362,037(+) A/C non_coding_transcript_variant
rs200102902 -- 75,365,085(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L1 Gene

Variant ID Type Subtype PubMed ID
nsv528969 CNV gain 19592680
nsv831035 CNV loss 17160897
nsv967341 CNV duplication 23825009
nsv981534 CNV duplication 23825009

Additional Variant Information for STAG3L1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAG3L1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L1 Gene

Disorders for STAG3L1 Gene

Additional Disease Information for STAG3L1

No disorders were found for STAG3L1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L1 Gene

Publications for STAG3L1 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams-Beuren syndrome deletion. (PMID: 10698974) Pezzi N … Barbero JL (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2000) 3 58

Products for STAG3L1 Gene

Sources for STAG3L1 Gene

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