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Aliases for STAG3L1 Gene

Aliases for STAG3L1 Gene

  • Stromal Antigen 3-Like 1 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 1 4
  • Stromal Antigen 3-Like 1 2
  • STAG3-Like Protein 1 3
  • STAG3L1P 3
  • STAG3L2 3
  • STAG3L3 3

External Ids for STAG3L1 Gene

Previous GeneCards Identifiers for STAG3L1 Gene

  • GC07P074827
  • GC07P074988
  • GC07P074321

Summaries for STAG3L1 Gene

GeneCards Summary for STAG3L1 Gene

STAG3L1 (Stromal Antigen 3-Like 1 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L1 Gene

Genomics for STAG3L1 Gene

Regulatory Elements for STAG3L1 Gene

Enhancers for STAG3L1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around STAG3L1 on UCSC Golden Path with GeneCards custom track

Promoters for STAG3L1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around STAG3L1 on UCSC Golden Path with GeneCards custom track

Genomic Location for STAG3L1 Gene

75,359,194 bp from pter
75,395,383 bp from pter
36,190 bases
Plus strand

Genomic View for STAG3L1 Gene

Genes around STAG3L1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L1 Gene

Proteins for STAG3L1 Gene

  • Protein details for STAG3L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative STAG3-like protein 1
    Protein Accession:
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L1 Gene

    205 amino acids
    Molecular mass:
    23775 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STAG3L1 Gene

Proteomics data for STAG3L1 Gene at MOPED

Post-translational modifications for STAG3L1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L1 Gene

Domains & Families for STAG3L1 Gene

Protein Domains for STAG3L1 Gene


Suggested Antigen Peptide Sequences for STAG3L1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 SCD (stromalin conservative) domain.
  • Belongs to the SCC3 family.
  • Contains 1 SCD (stromalin conservative) domain.
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L1: view

No data available for Gene Families for STAG3L1 Gene

Function for STAG3L1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L1 Gene

Localization for STAG3L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L1 Gene

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for STAG3L1 Gene

Pathways & Interactions for STAG3L1 Gene

SuperPathways for STAG3L1 Gene

No Data Available

Interacting Proteins for STAG3L1 Gene

Gene Ontology (GO) - Biological Process for STAG3L1 Gene


No data available for Pathways by source and SIGNOR curated interactions for STAG3L1 Gene

Drugs & Compounds for STAG3L1 Gene

No Compound Related Data Available

Transcripts for STAG3L1 Gene

mRNA/cDNA for STAG3L1 Gene

(2) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STAG3L1 Gene

Stromal antigen 3-like 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L1 Gene

No ASD Table

Relevant External Links for STAG3L1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for STAG3L1 Gene

mRNA expression in normal human tissues for STAG3L1 Gene

Protein differential expression in normal tissues from HIPED for STAG3L1 Gene

This gene is overexpressed in Monocytes (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for STAG3L1 Gene

SOURCE GeneReport for Unigene cluster for STAG3L1 Gene Hs.632310

genes like me logo Genes that share expression patterns with STAG3L1: view

Protein tissue co-expression partners for STAG3L1 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for STAG3L1 Gene

Orthologs for STAG3L1 Gene

Evolution for STAG3L1 Gene

Gene Tree for STAG3L1 (if available)
Gene Tree for STAG3L1 (if available)

No data available for Orthologs for STAG3L1 Gene

Paralogs for STAG3L1 Gene

genes like me logo Genes that share paralogs with STAG3L1: view

No data available for Paralogs for STAG3L1 Gene

Variants for STAG3L1 Gene

Sequence variations from dbSNP and Humsavar for STAG3L1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs2527276 -- 75,367,597(+) CATTC(A/T)CTGTC nc-transcript-variant
rs236599 -- 75,367,473(+) CACAG(C/T)GAACC nc-transcript-variant
rs236603 -- 75,361,930(+) TCACT(A/G)TTACC intron-variant
rs236604 -- 75,361,827(-) TTTTT(A/G)TATTA intron-variant
rs77301342 -- 75,363,578(-) AATGT(C/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L1 Gene

Variant ID Type Subtype PubMed ID
nsv888381 CNV Gain 21882294
nsv528969 CNV Gain 19592680
dgv2102e1 CNV Complex 17122850
essv14753 CNV CNV 17122850
nsv821387 CNV Deletion 20802225
esv25179 CNV Gain 19812545
nsv831035 CNV Loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for STAG3L1 Gene

Disorders for STAG3L1 Gene

Relevant External Links for STAG3L1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for STAG3L1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L1 Gene

Publications for STAG3L1 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams- Beuren syndrome deletion. (PMID: 10698974) Pezzi N. … Barbero J.L. (FASEB J. 2000) 3
  5. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3

Products for STAG3L1 Gene

Sources for STAG3L1 Gene