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Aliases for STAG3L1 Gene

Aliases for STAG3L1 Gene

  • Stromal Antigen 3-Like 1 (Pseudogene) 2 3
  • Stromal Antigen 3-Like Protein 1 4
  • Stromal Antigen 3-Like 1 2
  • STAG3-Like Protein 1 3
  • STAG3L1P 3
  • STAG3L2 3
  • STAG3L3 3

External Ids for STAG3L1 Gene

Previous GeneCards Identifiers for STAG3L1 Gene

  • GC07P074827
  • GC07P074988
  • GC07P074321

Summaries for STAG3L1 Gene

GeneCards Summary for STAG3L1 Gene

STAG3L1 (Stromal Antigen 3-Like 1 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L1 Gene

Genomics for STAG3L1 Gene

Regulatory Elements for STAG3L1 Gene

Genomic Location for STAG3L1 Gene

Chromosome:
7
Start:
75,359,194 bp from pter
End:
75,395,383 bp from pter
Size:
36,190 bases
Orientation:
Plus strand

Genomic View for STAG3L1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for STAG3L1 Gene

Proteins for STAG3L1 Gene

  • Protein details for STAG3L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CL83-ST3L1_HUMAN
    Recommended name:
    Putative STAG3-like protein 1
    Protein Accession:
    P0CL83
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L1 Gene

    Size:
    205 amino acids
    Molecular mass:
    23775 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STAG3L1 Gene

Proteomics data for STAG3L1 Gene at MOPED

Post-translational modifications for STAG3L1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L1 Gene

Domains & Families for STAG3L1 Gene

Protein Domains for STAG3L1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for STAG3L1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0CL83

UniProtKB/Swiss-Prot:

ST3L1_HUMAN :
  • Contains 1 SCD (stromalin conservative) domain.
  • Belongs to the SCC3 family.
Domain:
  • Contains 1 SCD (stromalin conservative) domain.
Family:
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L1: view

No data available for Gene Families for STAG3L1 Gene

Function for STAG3L1 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for STAG3L1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L1 Gene

Localization for STAG3L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L1 Gene

Gene Ontology (GO) - Cellular Components for STAG3L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with STAG3L1: view

No data available for Subcellular locations from COMPARTMENTS for STAG3L1 Gene

Pathways & Interactions for STAG3L1 Gene

SuperPathways for STAG3L1 Gene

No Data Available

Interacting Proteins for STAG3L1 Gene

Gene Ontology (GO) - Biological Process for STAG3L1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAG3L1 Gene

Drugs & Compounds for STAG3L1 Gene

No Compound Related Data Available

Transcripts for STAG3L1 Gene

mRNA/cDNA for STAG3L1 Gene

(2) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STAG3L1 Gene

Stromal antigen 3-like 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for STAG3L1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L1 Gene

No ASD Table

Relevant External Links for STAG3L1 Gene

GeneLoc Exon Structure for
STAG3L1
ECgene alternative splicing isoforms for
STAG3L1

Expression for STAG3L1 Gene

mRNA expression in normal human tissues for STAG3L1 Gene

Protein differential expression in normal tissues from HIPED for STAG3L1 Gene

This gene is overexpressed in Monocytes (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for STAG3L1 Gene



SOURCE GeneReport for Unigene cluster for STAG3L1 Gene Hs.632310

genes like me logo Genes that share expression patterns with STAG3L1: view

Protein tissue co-expression partners for STAG3L1 Gene

- Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for STAG3L1 Gene

Orthologs for STAG3L1 Gene

Evolution for STAG3L1 Gene

ENSEMBL:
Gene Tree for STAG3L1 (if available)
TreeFam:
Gene Tree for STAG3L1 (if available)

No data available for Orthologs for STAG3L1 Gene

Paralogs for STAG3L1 Gene

genes like me logo Genes that share paralogs with STAG3L1: view

No data available for Paralogs for STAG3L1 Gene

Variants for STAG3L1 Gene

Sequence variations from dbSNP and Humsavar for STAG3L1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs236599 -- 75,367,473(+) CACAG(C/T)GAACC nc-transcript-variant
rs236603 -- 75,361,930(+) TCACT(A/G)TTACC intron-variant
rs236604 -- 75,361,827(-) TTTTT(A/G)TATTA intron-variant
rs2527276 -- 75,367,597(+) CATTC(A/T)CTGTC nc-transcript-variant
rs62476639 -- 75,363,628(+) CAATC(A/G)TTTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L1 Gene

Variant ID Type Subtype PubMed ID
nsv888381 CNV Gain 21882294
nsv528969 CNV Gain 19592680
dgv2102e1 CNV Complex 17122850
essv14753 CNV CNV 17122850
nsv821387 CNV Deletion 20802225
esv25179 CNV Gain 19812545
nsv831035 CNV Loss 17160897

Relevant External Links for STAG3L1 Gene

HapMap Linkage Disequilibrium report
STAG3L1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L1 Gene

Disorders for STAG3L1 Gene

genes like me logo Genes that share disorders with STAG3L1: view

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for STAG3L1 Gene

Publications for STAG3L1 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 67
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 67
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67
  5. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams- Beuren syndrome deletion. (PMID: 10698974) Pezzi N. … Barbero J.L. (FASEB J. 2000) 67

Products for STAG3L1 Gene

Sources for STAG3L1 Gene

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