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Aliases for STAG3L1 Gene

Aliases for STAG3L1 Gene

  • Stromal Antigen 3-Like 1 (Pseudogene) 2 3
  • Stromal Antigen 3-Like Protein 1 4
  • Stromal Antigen 3-Like 1 2
  • STAG3-Like Protein 1 3
  • STAG3L1P 3
  • STAG3L2 3
  • STAG3L3 3

External Ids for STAG3L1 Gene

Previous GeneCards Identifiers for STAG3L1 Gene

  • GC07P074827
  • GC07P074988
  • GC07P074321

Summaries for STAG3L1 Gene

GeneCards Summary for STAG3L1 Gene

STAG3L1 (Stromal Antigen 3-Like 1 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L1 Gene

Genomics for STAG3L1 Gene

Regulatory Elements for STAG3L1 Gene

Genomic Location for STAG3L1 Gene

75,359,194 bp from pter
75,395,383 bp from pter
36,190 bases
Plus strand

Genomic View for STAG3L1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for STAG3L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L1 Gene

Proteins for STAG3L1 Gene

  • Protein details for STAG3L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative STAG3-like protein 1
    Protein Accession:
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L1 Gene

    205 amino acids
    Molecular mass:
    23775 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STAG3L1 Gene

Proteomics data for STAG3L1 Gene at MOPED

Post-translational modifications for STAG3L1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L1 Gene

Domains for STAG3L1 Gene

Protein Domains for STAG3L1 Gene


Suggested Antigen Peptide Sequences for STAG3L1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • P0CL83
  • Contains 1 SCD (stromalin conservative) domain.
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L1: view

No data available for Gene Families for STAG3L1 Gene

Function for STAG3L1 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for STAG3L1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for STAG3L1 Gene

Localization for STAG3L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L1 Gene

Subcellular locations from

Jensen Localization Image for STAG3L1 Gene COMPARTMENTS Subcellular localization image for STAG3L1 gene
Compartment Confidence
mitochondrion 2
nucleus 2
cytosol 1
endoplasmic reticulum 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for STAG3L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with STAG3L1: view

Pathways for STAG3L1 Gene

SuperPathways for STAG3L1 Gene

No Data Available

Interacting Proteins for STAG3L1 Gene

Gene Ontology (GO) - Biological Process for STAG3L1 Gene


No data available for Pathways by source for STAG3L1 Gene

Transcripts for STAG3L1 Gene

mRNA/cDNA for STAG3L1 Gene

(11) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STAG3L1 Gene

Stromal antigen 3-like 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for STAG3L1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L1 Gene

No ASD Table

Relevant External Links for STAG3L1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for STAG3L1 Gene

mRNA expression in normal human tissues for STAG3L1 Gene

Protein differential expression in normal tissues for STAG3L1 Gene

This gene is overexpressed in Monocytes (69.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for STAG3L1 Gene

SOURCE GeneReport for Unigene cluster for STAG3L1 Gene Hs.632310

genes like me logo Genes that share expressions with STAG3L1: view

Expression partners for STAG3L1 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for STAG3L1 Gene

Orthologs for STAG3L1 Gene

Evolution for STAG3L1 Gene

Gene Tree for STAG3L1 (if available)
Gene Tree for STAG3L1 (if available)

No data available for Orthologs for STAG3L1 Gene

Paralogs for STAG3L1 Gene

genes like me logo Genes that share paralogs with STAG3L1: view

No data available for Paralogs for STAG3L1 Gene

Variants for STAG3L1 Gene

Sequence variations from dbSNP and Humsavar for STAG3L1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs236604 -- 75,361,827(-) TTTTT(A/G)TATTA intron-variant
rs2527276 -- 75,367,597(+) CATTC(A/T)CTGTC nc-transcript-variant
rs62476639 -- 75,363,628(+) CAATC(A/G)TTTTA intron-variant
rs77301342 -- 75,363,578(-) AATGT(C/T)TTTTT intron-variant
rs78678521 -- 75,364,841(+) CCACT(A/G)AGATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L1 Gene

Variant ID Type Subtype PubMed ID
nsv888381 CNV Gain 21882294
nsv528969 CNV Gain 19592680
dgv2102e1 CNV Complex 17122850
essv14753 CNV CNV 17122850
nsv821387 CNV Deletion 20802225
esv25179 CNV Gain 19812545
nsv831035 CNV Loss 17160897

Relevant External Links for STAG3L1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for STAG3L1 Gene

Disorders for STAG3L1 Gene

No disorders were found for STAG3L1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for STAG3L1 Gene

Publications for STAG3L1 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3
  2. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams- Beuren syndrome deletion. (PMID: 10698974) Pezzi N. … Barbero J.L. (FASEB J. 2000) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for STAG3L1 Gene

Sources for STAG3L1 Gene

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