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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

STAG2 Gene

protein-coding   GIFtS: 63
GCID: GC0XP123094

stromal antigen 2
 Explore 4 diseases affiliated with
STAG2 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for STAG2    

Aliases
for STAG2 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Stromal Antigen 21 2 3     SCC3 Homolog 22 3
SA22 3 5     BA517O1.11
SA-21 2     Cohesin Subunit SA-22
SCC3B1 2     

External Ids:    HGNC: 113551   Entrez Gene: 107352   Ensembl: ENSG000001019727   OMIM: 3008265   UniProtKB: Q8N3U43   

Export aliases for STAG2 gene to outside databases

Previous GC identifers: GC0XP117813 GC0XP120049 GC0XP121046 GC0XP121793 GC0XP122821 GC0XP122922 GC0XP112478


Summaries
for STAG2 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
UniProtKB/Swiss-Prot: STAG2_HUMAN, Q8N3U4
Function: Component of cohesin complex, a complex required for the cohesion of sister chromatids after DNA replication.
The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At
anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin
complex may also play a role in spindle pole assembly during mitosis

Gene Wiki entry for STAG2


Genomic Views
for STAG2 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000023.10  NC_018934.1  NT_011786.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the STAG2 gene promoter:
         SRF   GATA-3   SRF (504 AA)   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 3): STAG2 promoter sequence
   Search SABiosciences Chromatin IP Primers for STAG2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat STAG2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq25   Ensembl cytogenetic band:  Xq25   HGNC cytogenetic band: Xq25

STAG2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
STAG2 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP123094:  view genomic region     (about GC identifiers)

Start:
 123,094,062 bp from pter      End:
 123,556,514 bp from pter
Size:
 462,453 bases      Orientation:
 plus strand

Proteins
for STAG2 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: STAG2_HUMAN, Q8N3U4 (See protein sequence)
Recommended Name: Cohesin subunit SA-2  
Size: 1231 amino acids; 141326 Da
Subunit: Interacts directly with RAD21 in cohesin complex. Cohesin complexes are composed of a heterodimer between a
SMC1 protein (SMC1A or SMC1B) and SMC3, which are attached via their hinge domain, and RAD21 which link them at their
heads, and one STAG protein (STAG1, STAG2 or STAG3). In cohesin complexes, STAG2 is mutually exclusive with STAG1 and
STAG3
Subcellular location: Nucleus. Chromosome. Chromosome, centromere. Note=Associates with chromatin. Before prophase it
is scattered along chromosome arms. During prophase, most of cohesin complexes dissociate from chromatin probably
because of phosphorylation by PLK1, except at centromeres, where cohesin complexes remain. At anaphase, the RAD21
subunit of cohesin is cleaved, leading to the dissociation of the complex from chromosomes, allowing chromosome
separation. In germ cells, cohesin complex dissociates from chromatin at prophase I, and may be replaced by a
meiosis-specific cohesin complex
Sequence caution: Sequence=CAA99732.1; Type=Erroneous initiation;
Secondary accessions: B1AMT5 D3DTF5 O00540 Q5JTI6 Q68DE9 Q9H1N8
Alternative splicing: 2 isoforms:  Q8N3U4-1   Q8N3U4-2   

Explore the universe of human proteins at neXtProt for STAG2: NX_Q8N3U4

Post-translational modifications:

  • Phosphorylated by PLK1. The large dissociation of cohesin from chromosome arms during prophase is partly due to its
    • phosphorylation (By similarity)1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8N3U4

    • STAG2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (4 alternative transcripts): 
    NP_001036214.1  NP_001036215.1  NP_001036216.1  NP_006594.3  

    ENSEMBL proteins: 
     ENSP00000377987   ENSP00000397265   ENSP00000218089   ENSP00000405555   ENSP00000360202  
     ENSP00000405874   ENSP00000360199   ENSP00000360187   ENSP00000401309   ENSP00000360186  
     ENSP00000415103   ENSP00000392118   ENSP00000377988   ENSP00000346555  
    Reactome Protein details: Q8N3U4
    Human Recombinant Protein Products: 
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    Browse ProSpec Recombinant Proteins
    Uscn Proteins for STAG2

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000775chromosome, centromeric region IEA--
    GO:0000785chromatin IDA16682347
    GO:0005634nucleus TAS9305759
    GO:0005654nucleoplasm TAS--


    STAG2 for ontologies           About GeneDecksing



    STAG2 Antibody Products: 
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    Uscn ELISAs and CLIAs for STAG2

    Protein Domains /
    Families
    for STAG2 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    STAG2 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR020839 SCD
     IPR013721 STAG
     IPR016024 ARM-type_fold

    Graphical View of Domain Structure for InterPro Entry Q8N3U4

    ProtoNet protein and cluster: Q8N3U4

    1 Blocks protein family: IPB013721 STAG

    UniProtKB/Swiss-Prot: STAG2_HUMAN, Q8N3U4
    Similarity: Belongs to the SCC3 family
    Similarity: Contains 1 SCD (stromalin conservative) domain


    Function
    for STAG2 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: STAG2_HUMAN, Q8N3U4
    Function: Component of cohesin complex, a complex required for the cohesion of sister chromatids after DNA replication.
    The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At
    anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin
    complex may also play a role in spindle pole assembly during mitosis

    miRNA
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    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat STAG2
    8/134 QIAGEN miScript miRNA Assays for microRNAs that regulate STAG2 (see all 134):
    hsa-miR-100* hsa-miR-3938 hsa-miR-1260b hsa-miR-138-2* hsa-miR-3916 hsa-miR-877* hsa-miR-409-5p hsa-miR-1243
    SwitchGear 3'UTR luciferase reporter plasmid: STAG2 3' UTR sequence
    Inhib. RNA
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    Gene Editing
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    Clone
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    Cell Line
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    In Situ Assay
    Products:       
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI17349791


    STAG2 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for STAG2:
     Increased homologous recombina 


    Pathways & Interactions
    for STAG2 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/13 super-pathways (see all 13) About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1M Phase
    		M Phase1.00
    		Mitotic Anaphase0.85
    		Mitotic M-M/G1 phases0.88
    		Separation of Sister Chromatids0.80
    		Mitotic Metaphase and Anaphase0.85
    2Meiotic Synapsis
    		Meiotic Synapsis1.00
    		Meiosis0.70
    		Telomere clustering at the nuclear membrane0.82
    		Chromosome Maintenance0.56
    3Cohesin Loading onto Chromatin
    		Cohesin Loading onto Chromatin1.00
    		Establishment of Sister Chromatid Cohesion0.62
    		Mitotic Telophase/Cytokinesis0.71
    4Resolution of Sister Chromatid Cohesion
    		Resolution of Sister Chromatid Cohesion1.00
    		Mitotic Prometaphase0.93
    		Kinetochore assembly0.96
    5Cell cycle_Spindle assembly and chromosome separation
    		Cell cycle_Spindle assembly and chromosome separation1.00
    		Cell cycle Spindle assembly and chromosome separation0.94

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for STAG2
        Cell cycle Spindle assembly and chromosome separation

    1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for STAG2
        Mitotic Roles of Polo Like Kinases

    2 Cell Signaling Technology (CST) Pathways for STAG2
        Chromatin Regulation / Acetylation
    Cell Cycle / Checkpoint Control

    1 GeneGo (Thomson Reuters) Pathway for STAG2
        Cell cycle Spindle assembly and chromosome separation

    1 BioSystems Pathway for STAG2 
        PLK1 signaling events

    5/20        Reactome Pathways for STAG2 (see all 20)
        Establishment of Sister Chromatid Cohesion
    Mitotic Prometaphase
    Resolution of Sister Chromatid Cohesion
    Cell Cycle
    M Phase


    1         Kegg Pathway  (Kegg details for STAG2):
        Cell cycle


    STAG2 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for STAG2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/560 Interacting proteins for STAG2 (Q8N3U41, 2, 3 ENSP000002180894) via UniProtKB, MINT, STRING, and/or I2D (see all 560)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SMC3Q9UQE71, 2, 3, ENSP000003547204EBI-2559208,EBI-80718 MINT-6178106 MINT-8080160 MINT-8081286 MINT-8081321 MINT-6178177 MINT-7914988 MINT-7947479 I2D: score=4 STRING: ENSP00000354720
    STAG1Q8WVM72, 3, ENSP000003726894MINT-6178106 I2D: score=3 STRING: ENSP00000372689
    SRRM1Q8IYB32, 3, ENSP000003262614MINT-7947479 I2D: score=1 STRING: ENSP00000326261
    RAD21O602162, 3, ENSP000002973384MINT-6178106 MINT-8080160 MINT-8081286 MINT-8081321 MINT-7914988 MINT-8081377 I2D: score=9 STRING: ENSP00000297338
    SSU72Q9NP772, 3, ENSP000002913864MINT-8080160 MINT-8081286 MINT-8081365 MINT-8081321 MINT-8081377 I2D: score=2 STRING: ENSP00000291386
    About this table

    Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000087M phase of mitotic cell cycle TAS--
    GO:0000236mitotic prometaphase TAS--
    GO:0000278mitotic cell cycle TAS--
    GO:0007062sister chromatid cohesion IMP15917200
    GO:0007091mitotic metaphase/anaphase transition TAS--


    STAG2 for ontologies           About GeneDecksing



    Drugs & Compounds
    for STAG2 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for STAG2
    Search CenterWatch for drugs/clinical trials and news about STAG2 

    Transcripts
    for STAG2 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for STAG2 gene (4 alternative transcripts): 
    NM_001042749.1  NM_001042750.1  NM_001042751.1  NM_006603.4  

    Unigene Cluster for STAG2:

    Stromal antigen 2
    Hs.496710  [show with all ESTs]
    Unigene Representative Sequence: NM_001042749
    18/19 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 19):
    ENST00000394477 ENST00000455404 ENST00000218089 ENST00000483575 ENST00000469481
    ENST00000458700 ENST00000371160(uc004eub.3) ENST00000435103 ENST00000371157(uc004eua.3 uc004etz.4 uc004euc.3 uc004eud.3 uc004eue.3)
    ENST00000371145 ENST00000458176 ENST00000371144 ENST00000466748 ENST00000471107
    ENST00000428941 ENST00000435215 ENST00000394478 ENST00000475602

    miRNA
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    8/134 QIAGEN miScript miRNA Assays for microRNAs that regulate STAG2 (see all 134):
    hsa-miR-100* hsa-miR-3938 hsa-miR-1260b hsa-miR-138-2* hsa-miR-3916 hsa-miR-877* hsa-miR-409-5p hsa-miR-1243
    SwitchGear 3'UTR luciferase reporter plasmid: STAG2 3' UTR sequence
    Inhib. RNA
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    Clone
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    Primer
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    Additional cDNA sequence: 

    AK026678.1 AK098737.1 AK298633.1 AK313559.1 AL831939.2 BC001765.1 BC017095.1 BX640970.1 
    BX641002.1 BX641003.1 CR627425.1 CR749433.1 DQ655919.2 DQ655920.2 DQ655921.2 DQ655922.2 

    24 DOTS entries:

    DT.454524  DT.121297128  DT.121297201  DT.101968516  DT.121297207  DT.101984639  DT.121297060  DT.121297187 
    DT.95119222  DT.100640230  DT.100786366  DT.75141305  DT.92007106  DT.95120276  DT.121297091  DT.121297092 
    DT.121297147  DT.121297152  DT.121297173  DT.121297174  DT.91771959  DT.95120295  DT.95125594  DT.91900344 

    24/331 AceView cDNA sequences (see all 331):

    AU132595 AA830209 AA504266 BC017095 AA489057 CA312713 BX641003 AW971841 
    BM471798 AK026678 AL708885 BQ690006 BM728575 AA811144 AV711824 CD677427 
    BE669903 BF434878 BM452406 BI491324 BG255453 AA418927 BM807242 AA251764 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for STAG2    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^
    SP1:                                                                                                                                                            
    SP2:                                                                                                                                                            
    SP3:                                                                                                                                                            
    SP4:                                                                                                                                                            

    ExUns: 27 ^ 28 ^ 29a · 29b ^ 30a · 30b ^ 31 ^ 32a · 32b ^ 33a · 33b ^ 34a · 34b
    SP1:                                      -     -                 -               
    SP2:                                            -                 -               
    SP3:                                            -                                 
    SP4:                                                                              


    ECgene alternative splicing isoforms for STAG2

    Expression
    for STAG2 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    STAG2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GTTAATAACA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    STAG2 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    TestisSeminiferous TubulesSpermatidGerm Cells, Male Gametocytes
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See STAG2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for STAG2

    SOURCE GeneReport for Unigene cluster: Hs.496710
        SABiosciences Custom PCR Arrays for STAG2
    Primer
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    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat STAG2
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    In Situ
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    Orthologs
    for STAG2 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of eukaryotes.

    Orthologs for STAG2 gene from 8/24 species (see all 24)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    chicken
    (Gallus gallus)    		 Aves STAG21 stromal antigen 2 86.08(n)
    96.84(a)    		   422360  XM_003641120.1  XP_003641168.1 
    lizard
    (Anolis carolinensis)    		 Reptilia STAG26
    		 --
    		 95(a)
    		 1 ↔ 1
    		 GL343409.1(74164-94182)
    tropical clawed frog
    (Xenopus tropicalis)    		 Amphibia Str.158522 Transcribed sequence with weak similarity to protein refNP_005853.1 (H.sapiens) stromal antigen 1; nuclear protein stromal antigen 1 [Homo sapiens] less 82.04(n)    AL875246.2 
    zebrafish
    (Danio rerio)    		 Actinopterygii Dr.48182 Transcribed sequence with weak similarity to protein refNP_005853.1 (H.sapiens) stromal antigen 1; nuclear protein stromal antigen 1 [Homo sapiens] less 73.6(n)    57063650 
    fruit fly
    (Drosophila melanogaster)    		 Insecta SA3   -- 47(a)
    (best of 2)    		   27C7   --
    worm
    (Caenorhabditis elegans)    		 Secernentea scc-31 Protein SCC-3 47.06(n)
    37.17(a)    		   179749  NM_073792.2  NP_506193.1 
    thale cress
    (Arabidopsis thaliana)    		 eudicotyledons SCC36
    		 cohesin complex subunit SA-1/2
    		 22(a)
    		 1 → many
    		 2(19631259-19636978)
    rice
    (Oryza sativa)    		 Liliopsida --
    		 SCC3, putative, expressed
    		 21(a)
    		 1 → many
    		 5(5424284-5433068)


    ENSEMBL Gene Tree for STAG2 (if available)
    TreeFam Gene Tree for STAG2 (if available) 

    Paralogs
    for STAG2 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for STAG2 gene
    STAG12  STAG32  STAG3L32  
    11 SIMAP similar genes for STAG2 using alignment to 10 protein entries:     STAG2_HUMAN (see all proteins):
    DKFZp686C21148    DKFZp686P16143    DKFZp686P168    DKFZp686I05169    DKFZp781D1416    STAG3L2
    STAG1 variant protein    STAG1    STAG3L3    STAG3L1    STAG3

    STAG2 for paralogs           About GeneDecksing



    Genomic Variants
    for STAG2 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1554 NCBI SNPs in STAG2 are shown (see all 1554)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr X posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs1408285771,2
    		--123092599(+) TGAATC/GTATTA 1 -- us2k10--------
    rs1815895001,2
    		--123092706(+) AATGTC/TTCAGA 1 -- us2k10--------
    rs1861063421,2
    		--123092788(+) AACTCC/TTTTTG 1 -- us2k10--------
    rs1908738641,2
    		--123092814(+) AACAAC/TAAGCA 1 -- us2k10--------
    rs1834486291,2
    		--123092834(+) GGAGAG/TAAACT 1 -- us2k10--------
    rs1445749051,2
    		--123092851(+) AGATAC/TGGAAG 1 -- us2k10--------
    rs1131263121,2
    		C,--123093088(+) TTCTTC/AAGCAA 1 -- us2k11Minor allele frequency- A:0.00CSA 1
    rs349821351,2
    		C,F,--123094091(+) AGAAGC/AACCGC 4 -- us2k12Minor allele frequency- A:0.50NA 4
    rs1859768511,2
    		--123094295(+) GGCTGA/GGAGCC 4 -- us2k10--------
    rs1906999601,2
    		--123094657(+) GAAAGA/GAGGAG 4 -- ut51 us2k10--------

    HapMap Linkage Disequilibrium report for STAG2 (123094062 - 123344062 bp, first 250kb of STAG2)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 5 variations for STAG2
         3 CNVs: 83720 4169 96948
         2 Indels: 10855 96949

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    Disorders / Diseases
    for STAG2 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    STAG2 for disorders           About GeneDecksing

    OMIM gene information: 300826    OMIM disorders: --

    4 diseases for STAG2:    About MalaCards
    legg-calve-perthes disease    cornelia de lange syndrome    laryngotracheitis    tracheitis

    3 diseases from the University of Copenhagen DISEASES database for STAG2:
    Laryngotracheitis     Tracheitis     Legg-Calve-Perthes Disease

    Export disorders for STAG2 gene to outside databases

    Publications
    for STAG2 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for STAG2 gene, integrated from 9 sources (see all 50):
    (articles sorted by number of sources associating them with STAG2)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. SA-1, a nuclear protein encoded by one member of a novel gene family: molecular cloning and detection in hemopoietic organs. (PubMed id 9305759)1, 2, 3 Carramolino L.... Zipori D. (1997)
    2. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
    3. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (2005)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. STAG2 and Rad21 mammalian mitotic cohesins are implicated in meiosis. (PubMed id 12034751)1, 2 Prieto I.... Barbero J.L. (2002)
    6. Characterization of vertebrate cohesin complexes and their regulation in prophase. (PubMed id 11076961)1, 2 Sumara I.... Peters J.-M. (2000)
    7. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    8. A cohesin-RAD21 interactome. (PubMed id 22145905)1 Panigrahi A.K....Pati D. (2012)
    9. The proteomic analysis of endogenous FAT10 substrates identifies p62/SQSTM1 as a substrate of FAT10ylation. (PubMed id 22797925)1 Aichem A....Groettrup M. (2012)
    10. Somatic mutation of STAG2, an aneuploidy-related gene, is rare in acute leukemias. (PubMed id 22132872)1 Chung N.G....Lee S.H. (2012)

    External Searches for STAG2 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing STAG2 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 10735 HGNC: 11355 AceView: STAG2 Ensembl:ENSG00000101972 euGenes: HUgn10735
    ECgene: STAG2 Kegg: 10735 H-InvDB: STAG2

    Other Databases showing STAG2 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing STAG2 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for STAG2 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for STAG2 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for STAG2 gene:
    Search GeneIP for patents involving STAG2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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