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Aliases for STAB2 Gene

Aliases for STAB2 Gene

  • Stabilin 2 2 3 5
  • Hyaluronic Acid Receptor For Endocytosis 2 3
  • Hyaluronan Receptor For Endocytosis 3 4
  • FEEL2 3 4
  • FEX2 3 4
  • HARE 3 4
  • Fasciclin Egf-Like, Laminin-Type Egf-Like, And Link Domain-Containing Scavenger Receptor-2 3
  • Fasciclin, EGF-Like, Laminin-Type EGF-Like And Link Domain-Containing Scavenger Receptor 2 4
  • FAS1 EGF-Like And X-Link Domain Containing Adhesion Molecule-2 3
  • FAS1 EGF-Like And X-Link Domain-Containing Adhesion Molecule 2 4
  • Hepatic Hyaluronan Clearance Receptor 3
  • CD44-Like Precursor FELL 3
  • Stabilin-2 3
  • FELE-2 3
  • SCARH1 3
  • FEEL-2 4
  • FELL2 3
  • FELL 4

External Ids for STAB2 Gene

Previous GeneCards Identifiers for STAB2 Gene

  • GC12P103079
  • GC12M9E0035
  • GC12P103914
  • GC12P102483
  • GC12P101040
  • GC12P103981

Summaries for STAB2 Gene

Entrez Gene Summary for STAB2 Gene

  • This gene encodes a large, transmembrane receptor protein which may function in angiogenesis, lymphocyte homing, cell adhesion, or receptor scavenging. The protein contains 7 fasciclin, 15 epidermal growth factor (EGF)-like, and 2 laminin-type EGF-like domains as well as a C-type lectin-like hyaluronan-binding Link module. The protein is primarily expressed on sinusoidal endothelial cells of liver, spleen, and lymph node. The receptor has been shown to bind and endocytose ligands such as hyaluronan, low density lipoprotein, Gram-positive and Gram-negative bacteria, and advanced glycosylation end products. Supporting its possible role as a scavenger receptor, the protein has been shown to cycle between the plasma membrane and lysosomes. [provided by RefSeq, Jul 2008]

GeneCards Summary for STAB2 Gene

STAB2 (Stabilin 2) is a Protein Coding gene. Diseases associated with STAB2 include Tularemia and La Crosse Encephalitis. Among its related pathways are Metabolism and Vesicle-mediated transport. GO annotations related to this gene include calcium ion binding and protein disulfide oxidoreductase activity. An important paralog of this gene is STAB1.

UniProtKB/Swiss-Prot for STAB2 Gene

  • Phosphatidylserine receptor that enhances the engulfment of apoptotic cells. Hyaluronan receptor that binds to and mediates endocytosis of hyaluronic acid (HA). Acts also, in different species, as a primary systemic scavenger receptor for heparin (Hep), chondroitin sulfate (CS), dermatan sulfate (DS), nonglycosaminoglycan (GAG), acetylated low-density lipoprotein (AcLDL), pro-collagen propeptides and advanced glycation end products (AGE). May serve to maintain tissue integrity by supporting extracellular matrix turnover or it may contribute to maintaining fluidity of bodily liquids by resorption of hyaluronan. Counter receptor which plays an important role in lymphocyte recruitment in the hepatic vasculature. Binds to both Gram-positive and Gram-negative bacteria and may play a role in defense against bacterial infection. The proteolytically processed 190 kDa form also functions as an endocytosis receptor for heparin internalisation as well as HA and CS.

Gene Wiki entry for STAB2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAB2 Gene

Genomics for STAB2 Gene

Regulatory Elements for STAB2 Gene

Enhancers for STAB2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F103570 0.8 Ensembl ENCODE 15.3 -15.8 -15782 1.4 HDGF PKNOX1 MLX ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 STAB2 NFYB ENSG00000212594 C12orf42 GLT8D2 GC12P103574 LOC101929084
GH12F103575 0.6 Ensembl ENCODE 13.1 -11.7 -11654 0.8 CTCF PKNOX1 MAX ZNF644 ZNF2 RAD21 YY1 E2F1 CTBP1 GATA3 STAB2 GC12P103574 GC12P103575 GC12P103576
GH12F103559 0.8 Ensembl ENCODE 12.9 -26.3 -26276 3.8 JUN SIN3A ZNF644 ZNF335 CTBP1 SCRT2 FOS MAFK NFE2L2 SCRT1 STAB2 C12orf42 ENSG00000212594 GC12P103574 LOC101929084
GH12F103503 0.2 ENCODE 8.8 -82.2 -82190 2.8 TBP PKNOX1 TBL1XR1 WRNIP1 BMI1 RAD21 YY1 ZNF207 ETV6 FOS STAB2 ENSG00000257994 LOC644203
GH12F102914 1 ENCODE 4.4 -669.3 -669327 7.0 PKNOX1 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 GATA2 ZNF143 SP5 STAB2 GC12M102927 GC12P102871
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around STAB2 on UCSC Golden Path with GeneCards custom track

Genomic Location for STAB2 Gene

Chromosome:
12
Start:
103,587,255 bp from pter
End:
103,766,729 bp from pter
Size:
179,475 bases
Orientation:
Plus strand

Genomic View for STAB2 Gene

Genes around STAB2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAB2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAB2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAB2 Gene

Proteins for STAB2 Gene

  • Protein details for STAB2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WWQ8-STAB2_HUMAN
    Recommended name:
    Stabilin-2
    Protein Accession:
    Q8WWQ8
    Secondary Accessions:
    • Q6ZMK2
    • Q7Z5N9
    • Q86UR4
    • Q8IUG9
    • Q8TES1
    • Q9H7H7
    • Q9NRY3

    Protein attributes for STAB2 Gene

    Size:
    2551 amino acids
    Molecular mass:
    276988 Da
    Quaternary structure:
    • Interacts with GULP1 and heparin. Also interacts with alpha-M/beta-2 integrin (ITGAM and ITGB2) and thymosin beta 4 (TMSB4X and/or TMSB4Y).
    SequenceCaution:
    • Sequence=AAF82398.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAD18723.1; Type=Frameshift; Positions=240, 253, 588, 1586; Evidence={ECO:0000305};

neXtProt entry for STAB2 Gene

Post-translational modifications for STAB2 Gene

  • Glycosylated.
  • Proteolytically processed to yield a 190 kDa protein.
  • Glycosylation at Asn 133, Asn 337, Asn 449, Asn 619, Asn 720, Asn 761, Asn 847, Asn 925, Asn 1016, Asn 1028, Asn 1100, Asn 1247, Asn 1275, Asn 1367, Asn 1429, Asn 1437, Asn 1465, Asn 1573, Asn 1679, Asn 1743, Asn 1993, Asn 2064, Asn 2280, Asn 2296, Asn 2336, Asn 2368, Asn 2382, and Asn 2393
  • Modification sites at PhosphoSitePlus

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for STAB2

No data available for DME Specific Peptides for STAB2 Gene

Domains & Families for STAB2 Gene

Gene Families for STAB2 Gene

Suggested Antigen Peptide Sequences for STAB2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WWQ8

UniProtKB/Swiss-Prot:

STAB2_HUMAN :
  • Recognizes phosphatidyl serine via its epidermal growth factor-like domains.
Domain:
  • Recognizes phosphatidyl serine via its epidermal growth factor-like domains.
  • Contains 17 EGF-like domains.
  • Contains 7 FAS1 domains.
  • Contains 2 laminin EGF-like domains.
  • Contains 1 Link domain.
genes like me logo Genes that share domains with STAB2: view

Function for STAB2 Gene

Molecular function for STAB2 Gene

UniProtKB/Swiss-Prot Function:
Phosphatidylserine receptor that enhances the engulfment of apoptotic cells. Hyaluronan receptor that binds to and mediates endocytosis of hyaluronic acid (HA). Acts also, in different species, as a primary systemic scavenger receptor for heparin (Hep), chondroitin sulfate (CS), dermatan sulfate (DS), nonglycosaminoglycan (GAG), acetylated low-density lipoprotein (AcLDL), pro-collagen propeptides and advanced glycation end products (AGE). May serve to maintain tissue integrity by supporting extracellular matrix turnover or it may contribute to maintaining fluidity of bodily liquids by resorption of hyaluronan. Counter receptor which plays an important role in lymphocyte recruitment in the hepatic vasculature. Binds to both Gram-positive and Gram-negative bacteria and may play a role in defense against bacterial infection. The proteolytically processed 190 kDa form also functions as an endocytosis receptor for heparin internalisation as well as HA and CS.

Gene Ontology (GO) - Molecular Function for STAB2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005041 low-density lipoprotein receptor activity IDA 12077138
GO:0005044 scavenger receptor activity IDA 12077138
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding IPI 18519035
GO:0005540 hyaluronic acid binding ISS --
genes like me logo Genes that share ontologies with STAB2: view
genes like me logo Genes that share phenotypes with STAB2: view

Animal Models for STAB2 Gene

MGI Knock Outs for STAB2:

Animal Model Products

  • Taconic Biosciences Mouse Models for STAB2

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for STAB2 Gene

Localization for STAB2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAB2 Gene

Cell membrane; Single-pass type I membrane protein. Cytoplasm. Note=Only a small amount appears to be present at the cell surface (PubMed:17145755).

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for STAB2 Gene COMPARTMENTS Subcellular localization image for STAB2 gene
Compartment Confidence
plasma membrane 5
cytosol 2
mitochondrion 2
chloroplast 1
endoplasmic reticulum 1
extracellular 1
nucleus 1
peroxisome 1
vacuole 1

Gene Ontology (GO) - Cellular Components for STAB2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA --
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane IDA 12077138
GO:0009897 external side of plasma membrane ISS --
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with STAB2: view

Pathways & Interactions for STAB2 Gene

genes like me logo Genes that share pathways with STAB2: view

Gene Ontology (GO) - Biological Process for STAB2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001525 angiogenesis NAS 12077138
GO:0006897 endocytosis ISS --
GO:0006898 receptor-mediated endocytosis TAS 12077138
GO:0007155 cell adhesion NAS 12077138
GO:0010468 regulation of gene expression IMP 21810271
genes like me logo Genes that share ontologies with STAB2: view

No data available for SIGNOR curated interactions for STAB2 Gene

Drugs & Compounds for STAB2 Gene

(1) Drugs for STAB2 Gene - From: DrugBank and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Hyaluronic acid Approved, Vet_approved Pharma Target, binder 439
genes like me logo Genes that share compounds with STAB2: view

Transcripts for STAB2 Gene

Unigene Clusters for STAB2 Gene

Stabilin 2:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAB2 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^
SP1: -
SP2:
SP3:
SP4:
SP5:

ExUns: 26 ^ 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32 ^ 33 ^ 34 ^ 35 ^ 36 ^ 37 ^ 38 ^ 39 ^ 40 ^ 41 ^ 42a · 42b · 42c ^ 43 ^ 44a · 44b ^ 45 ^ 46a · 46b ^ 47 ^
SP1: - - -
SP2:
SP3:
SP4: -
SP5:

Relevant External Links for STAB2 Gene

GeneLoc Exon Structure for
STAB2
ECgene alternative splicing isoforms for
STAB2

Expression for STAB2 Gene

mRNA expression in normal human tissues for STAB2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for STAB2 Gene

This gene is overexpressed in Spleen (x39.7) and Liver (x4.6).

Protein differential expression in normal tissues from HIPED for STAB2 Gene

This gene is overexpressed in Spleen (41.4) and Fetal Liver (15.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for STAB2 Gene



NURSA nuclear receptor signaling pathways regulating expression of STAB2 Gene:

STAB2

SOURCE GeneReport for Unigene cluster for STAB2 Gene:

Hs.408249

mRNA Expression by UniProt/SwissProt for STAB2 Gene:

Q8WWQ8-STAB2_HUMAN
Tissue specificity: Highly expressed in sinusoidal endothelial cells of liver, spleen and lymph nodes. Also expressed in non SEC-cells such as HMDMs (monocyte-derivedmacrophages), HAMs (T-cell leukemia virus type 1-associated myelopathy), and several macrophage cell line.
genes like me logo Genes that share expression patterns with STAB2: view

Primer Products

No data available for Protein tissue co-expression partners for STAB2 Gene

Orthologs for STAB2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for STAB2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia STAB2 34 35
  • 99.48 (n)
cow
(Bos Taurus)
Mammalia STAB2 34 35
  • 85.51 (n)
dog
(Canis familiaris)
Mammalia STAB2 34 35
  • 81.21 (n)
mouse
(Mus musculus)
Mammalia Stab2 34 16 35
  • 81.18 (n)
rat
(Rattus norvegicus)
Mammalia Stab2 34
  • 81.1 (n)
oppossum
(Monodelphis domestica)
Mammalia STAB2 35
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia STAB2 35
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves STAB2 34 35
  • 66.84 (n)
lizard
(Anolis carolinensis)
Reptilia STAB2 35
  • 61 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia stab2 34
  • 63.42 (n)
Str.15433 34
zebrafish
(Danio rerio)
Actinopterygii stab2 34 35
  • 55.38 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9826 34
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 32 (a)
OneToMany
Species where no ortholog for STAB2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for STAB2 Gene

ENSEMBL:
Gene Tree for STAB2 (if available)
TreeFam:
Gene Tree for STAB2 (if available)

Paralogs for STAB2 Gene

Paralogs for STAB2 Gene

(2) SIMAP similar genes for STAB2 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with STAB2: view

Variants for STAB2 Gene

Sequence variations from dbSNP and Humsavar for STAB2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1018033 -- 103,628,401(+) atcaa(A/G)aaaac intron-variant
rs1018034 -- 103,629,526(+) TGGAG(A/C)CAGAG intron-variant
rs10219560 -- 103,705,986(+) ATGGG(A/G)CCACC intron-variant
rs1032450 -- 103,652,823(-) ATACA(C/T)GAGGA intron-variant
rs10431413 -- 103,659,331(+) CAAGG(C/T)CAAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STAB2 Gene

Variant ID Type Subtype PubMed ID
esv2746294 CNV deletion 23290073
esv2746295 CNV deletion 23290073
esv2746296 CNV deletion 23290073
esv2746298 CNV deletion 23290073
esv3363460 CNV insertion 20981092
esv34031 CNV loss 18971310
esv3630619 CNV gain 21293372
esv3892262 CNV gain 25118596
esv997744 CNV deletion 20482838
nsv1052275 CNV gain 25217958
nsv1134257 CNV deletion 24896259
nsv1138164 CNV deletion 24896259
nsv1152062 CNV insertion 26484159
nsv472300 CNV novel sequence insertion 20440878
nsv518252 CNV loss 19592680
nsv524064 CNV loss 19592680
nsv525838 CNV loss 19592680
nsv527362 CNV loss 19592680
nsv560038 CNV loss 21841781
nsv865 CNV deletion 18451855
nsv867 CNV insertion 18451855

Variation tolerance for STAB2 Gene

Residual Variation Intolerance Score: 95.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.45; 94.31% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for STAB2 Gene

Human Gene Mutation Database (HGMD)
STAB2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAB2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for STAB2 Gene

Disorders for STAB2 Gene

MalaCards: The human disease database

(13) MalaCards diseases for STAB2 Gene - From: DISEASES

Disorder Aliases PubMed IDs
tularemia
  • deerfly fever
la crosse encephalitis
  • california encephalitis
glandular tularemia
louping ill
ulceroglandular tularemia
- elite association - COSMIC cancer census association via MalaCards
Search STAB2 in MalaCards View complete list of genes associated with diseases

Relevant External Links for STAB2

Genetic Association Database (GAD)
STAB2
Human Genome Epidemiology (HuGE) Navigator
STAB2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STAB2
genes like me logo Genes that share disorders with STAB2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for STAB2 Gene

Publications for STAB2 Gene

  1. Stabilin-1 and -2 constitute a novel family of fasciclin-like hyaluronan receptor homologues. (PMID: 11829752) Politz O. … Goerdt S. (Biochem. J. 2002) 2 3 4 22 64
  2. Rat and human HARE/stabilin-2 are clearance receptors for high- and low-molecular-weight heparins. (PMID: 19359419) Harris E.N. … Weigel P.H. (Am. J. Physiol. 2009) 3 4 22 64
  3. Rapid cell corpse clearance by stabilin-2, a membrane phosphatidylserine receptor. (PMID: 17962816) Park S.Y. … Kim I.S. (Cell Death Differ. 2008) 3 4 22 64
  4. Requirement of adaptor protein GULP during stabilin-2-mediated cell corpse engulfment. (PMID: 18230608) Park S.Y. … Kim I.S. (J. Biol. Chem. 2008) 3 4 22 64
  5. The human hyaluronan receptor for endocytosis (HARE/Stabilin-2) is a systemic clearance receptor for heparin. (PMID: 18434317) Harris E.N. … Weigel P.H. (J. Biol. Chem. 2008) 3 4 22 64

Products for STAB2 Gene

Sources for STAB2 Gene

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