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Aliases for ST8SIA6-AS1 Gene

Subcategory (RNA class) for ST8SIA6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ST8SIA6-AS1 Gene

  • ST8SIA6 Antisense RNA 1 2 3 5

External Ids for ST8SIA6-AS1 Gene

Previous GeneCards Identifiers for ST8SIA6-AS1 Gene

  • GC10P017430

Summaries for ST8SIA6-AS1 Gene

GeneCards Summary for ST8SIA6-AS1 Gene

ST8SIA6-AS1 (ST8SIA6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ST8SIA6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST8SIA6-AS1 Gene

Genomics for ST8SIA6-AS1 Gene

Regulatory Elements for ST8SIA6-AS1 Gene

Enhancers for ST8SIA6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H017423 2 FANTOM5 Ensembl ENCODE dbSUPER 8.9 +39.8 39772 6 HDGF PKNOX1 ARNT YBX1 ZNF766 ZC3H11A ZNF592 MEF2D SMARCA4 NBN ST8SIA6 LOC105376438 TMEM236 ST8SIA6-AS1 STAM TRDMT1 LOC105376436 ENSG00000251803
GH10H017347 1.5 FANTOM5 Ensembl ENCODE 11 -37.9 -37861 2 HDAC1 NFIB ZSCAN4 TCF12 SCRT2 FOS RCOR1 ATF7 USF2 REST ST8SIA6-AS1 ST8SIA6 GC10P017237
GH10H017413 0.6 dbSUPER 18.6 +27.9 27919 1 PKNOX1 L3MBTL2 DPF2 ZNF592 TFDP1 ZNF316 ZNF184 IKZF1 MGA ST8SIA6-AS1 ENSG00000251803 LOC105376436
GH10H017409 0.6 ENCODE 13.6 +22.4 22421 0 CTCF ZNF654 REST RAD21 CHAMP1 ZNF592 ZNF143 ZNF24 ST8SIA6-AS1 ENSG00000251803 LOC105376436
GH10H017357 0.6 ENCODE 11.4 -29.4 -29446 0 ZNF217 SMARCE1 CTBP1 ZNF239 CEBPB CEBPG DPF2 TCF7L2 ST8SIA6-AS1 GC10P017237
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ST8SIA6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ST8SIA6-AS1 Gene

Chromosome:
10
Start:
17,386,936 bp from pter
End:
17,413,503 bp from pter
Size:
26,568 bases
Orientation:
Plus strand

Genomic View for ST8SIA6-AS1 Gene

Genes around ST8SIA6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST8SIA6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST8SIA6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST8SIA6-AS1 Gene

Proteins for ST8SIA6-AS1 Gene

Post-translational modifications for ST8SIA6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ST8SIA6-AS1 Gene

Domains & Families for ST8SIA6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ST8SIA6-AS1 Gene

Function for ST8SIA6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ST8SIA6-AS1 Gene

Localization for ST8SIA6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ST8SIA6-AS1 Gene

Pathways & Interactions for ST8SIA6-AS1 Gene

SuperPathways for ST8SIA6-AS1 Gene

No Data Available

Interacting Proteins for ST8SIA6-AS1 Gene

Gene Ontology (GO) - Biological Process for ST8SIA6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ST8SIA6-AS1 Gene

Drugs & Compounds for ST8SIA6-AS1 Gene

No Compound Related Data Available

Transcripts for ST8SIA6-AS1 Gene

mRNA/cDNA for ST8SIA6-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ST8SIA6-AS1 Gene

ST8SIA6 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ST8SIA6-AS1 Gene

No ASD Table

Relevant External Links for ST8SIA6-AS1 Gene

GeneLoc Exon Structure for
ST8SIA6-AS1
ECgene alternative splicing isoforms for
ST8SIA6-AS1

Expression for ST8SIA6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ST8SIA6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ST8SIA6-AS1 Gene

This gene is overexpressed in Testis (x21.6), Prostate (x6.6), and Nerve - Tibial (x5.6).

SOURCE GeneReport for Unigene cluster for ST8SIA6-AS1 Gene:

Hs.530588
genes like me logo Genes that share expression patterns with ST8SIA6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ST8SIA6-AS1 Gene

Orthologs for ST8SIA6-AS1 Gene

Evolution for ST8SIA6-AS1 Gene

ENSEMBL:
Gene Tree for ST8SIA6-AS1 (if available)
TreeFam:
Gene Tree for ST8SIA6-AS1 (if available)

No data available for Orthologs for ST8SIA6-AS1 Gene

Paralogs for ST8SIA6-AS1 Gene

No data available for Paralogs for ST8SIA6-AS1 Gene

Variants for ST8SIA6-AS1 Gene

Sequence variations from dbSNP and Humsavar for ST8SIA6-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000091975 -- 17,389,854(+) ATTTC(A/G)GTCTG intron-variant
rs1000435581 -- 17,408,768(+) TATTT(A/T)TTTTG intron-variant
rs1000572631 -- 17,403,146(+) GATGG(A/G)CCTGG intron-variant
rs1000791614 -- 17,390,190(+) GTTGC(C/T)AAGCC intron-variant
rs1000793124 -- 17,405,942(+) TTCCT(C/T)AGGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ST8SIA6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3578664 CNV loss 25503493
esv3891766 CNV loss 25118596
nsv1039697 CNV loss 25217958

Relevant External Links for ST8SIA6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ST8SIA6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ST8SIA6-AS1 Gene

Disorders for ST8SIA6-AS1 Gene

Relevant External Links for ST8SIA6-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ST8SIA6-AS1

No disorders were found for ST8SIA6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ST8SIA6-AS1 Gene

Publications for ST8SIA6-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for ST8SIA6-AS1 Gene

Sources for ST8SIA6-AS1 Gene

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