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ST8SIA1 Gene

protein-coding   GIFtS: 59
GCID: GC12M022119

ST8 Alpha-N-Acetyl-Neuraminide Alpha-2,8-Sialyltransferase...

(Previous names: sialyltransferase 8 (alpha-N-acetylneuraminate: alpha-2,8-sialytransferase,...)
(Previous symbols: SIAT8, SIAT8A)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): antisense

Quality score for the ORGUL clustered with this gene is 3

Aliases
ST8 Alpha-N-Acetyl-Neuraminide Alpha-2,8-Sialyltransferase 11 2     EC 2.4.99.83 8
SIAT81 2 3 5     ST8Sia I1
SIAT8A1 2 3     GD3S2
Sialyltransferase 8 (Alpha-N-Acetylneuraminate:
Alpha-2,8-Sialytransferase, GD3 Synthase) A1 2
     Alpha-N-Acetylneuraminide Alpha-2,8-Sialyltransferase2
Alpha-2,8-Sialyltransferase 8A2 3     Disialoganglioside (GD3) Synthase2
Ganglioside GD3 Synthase2 3     Ganglioside-Specific Alpha-2,8-Polysialyltransferase2
Ganglioside GT3 Synthase2 3     Sialyltransferase 8A (Alpha-N-Acetylneuraminate:
Alpha-2,8-Sialyltransferase, GD3 Synthase)2
Sialyltransferase St8Sia I2 3     Sialytransferase St8Sia I2
SIAT8-A2 3     Sialyltransferase 8A3
ST8SiaI2 3     

External Ids:    HGNC: 108691   Entrez Gene: 64892   Ensembl: ENSG000001117287   OMIM: 6011235   UniProtKB: Q921853   
ORGUL members:         

Export aliases for ST8SIA1 gene to outside databases

Previous GC identifer: GC12M022246


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for ST8SIA1 Gene:
Gangliosides are membrane-bound glycosphingolipids containing sialic acid. Ganglioside GD3 is known to be
important for cell adhesion and growth of cultured malignant cells. The protein encoded by this gene is a type II
membrane protein that catalyzes the transfer of sialic acid from CMP-sialic acid to GM3 to produce gangliosides
GD3 and GT3. The encoded protein may be found in the Golgi apparatus and is a member of glycosyltransferase
family 29. (provided by RefSeq, Jul 2008)

GeneCards Summary for ST8SIA1 Gene:
ST8SIA1 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1) is a protein-coding gene. GO annotations related to this gene include alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity and sialyltransferase activity. An important paralog of this gene is ST8SIA5.

UniProtKB/Swiss-Prot: SIA8A_HUMAN, Q92185
Function: Involved in the production of gangliosides GD3 and GT3 from GM3; gangliosides are a subfamily of complex
glycosphinglolipds that contain one or more residues of sialic acid

Gene Wiki entry for ST8SIA1 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000012.11  NT_009714.18  NC_018923.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ST8SIA1 gene promoter:
         GR   HOXA9B   HOXA9   CUTL1   Gfi-1   Meis-1b   C/EBPalpha   RORalpha1   GR-alpha   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidST8SIA1 promoter sequence
   Search Chromatin IP Primers for ST8SIA1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ST8SIA1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12p12.1-p11.2   Ensembl cytogenetic band:  12p12.1   HGNC cytogenetic band: 12p12.1-p11.2

ST8SIA1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ST8SIA1 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M022119:  view genomic region     (about GC identifiers)

Start:
22,216,707 bp from pter      End:
22,589,975 bp from pter
Size:
373,269 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: SIA8A_HUMAN, Q92185 (See protein sequence)
Recommended Name: Alpha-N-acetylneuraminide alpha-2,8-sialyltransferase  
Size: 356 amino acids; 40519 Da
Sequence caution: Sequence=AAC37586.1; Type=Erroneous initiation; Sequence=CAA54891.1; Type=Erroneous initiation;
Secondary accessions: A8K4H6 Q17RL0 Q6PZN5 Q93064
Alternative splicing: 2 isoforms:  Q92185-1   Q92185-2   

Explore the universe of human proteins at neXtProt for ST8SIA1: NX_Q92185

Explore proteomics data for ST8SIA1 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn71, Asn119, Asn214, Asn245
  • Selected DME Specific Peptides for ST8SIA1 (Q92185) (see all 6)
     WPFSVNM  PSLRVYYTL  GKFWKSRGIH  HAMPEEFLQLW 


    See ST8SIA1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_003025.1  
    ENSEMBL proteins: 
     ENSP00000379353   ENSP00000261197   ENSP00000441707   ENSP00000444999   ENSP00000440292  
     ENSP00000384467   ENSP00000370832   ENSP00000446363  
    Reactome Protein details: Q92185

    ST8SIA1 Human Recombinant Protein Products:

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    Novus Biologicals ST8SIA1 Proteins
    Novus Biologicals ST8SIA1 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse Sino Biological Cell Lysates
    Browse ProSpec Recombinant Proteins
    Browse Proteins at Cloud-Clone Corp.

     
    Search eBioscience for Proteins for ST8SIA1 

     
    antibodies-online proteins for ST8SIA1 (4 products) 

     
    antibodies-online peptides for ST8SIA1

    ST8SIA1 Antibody Products:

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    ST8SIA1 Assay Products:

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    antibodies-online kits for ST8SIA1 (6 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ST3G: Sialyltransferases

    2 InterPro protein domains:
     IPR001675 Glyco_trans_29
     IPR012163 Sialyl_trans

    Graphical View of Domain Structure for InterPro Entry Q92185

    ProtoNet protein and cluster: Q92185

    1 Blocks protein domain: IPB001675 Glycosyl transferase

    UniProtKB/Swiss-Prot: SIA8A_HUMAN, Q92185
    Similarity: Belongs to the glycosyltransferase 29 family


    Find genes that share domains with ST8SIA1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: SIA8A_HUMAN, Q92185
    Function: Involved in the production of gangliosides GD3 and GT3 from GM3; gangliosides are a subfamily of complex
    glycosphinglolipds that contain one or more residues of sialic acid
    Catalytic activity: CMP-N-acetylneuraminate + alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-R = CMP +
    alpha-N-acetylneuraminyl-(2->8)-alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-R

         Enzyme Number (IUBMB): EC 2.4.99.81 2

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003828alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA--
    GO:0008373sialyltransferase activity TAS8195250
         
    Find genes that share ontologies with ST8SIA1           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for ST8SIA1:
     Increased G2M DNA content 

         8 MGI mutant phenotypes (inferred from 2 alleles(MGI details for St8sia1):
     behavior/neurological  hematopoietic system  immune system  mortality/aging  nervous system 
     normal  reproductive system  respiratory system 

    Find genes that share phenotypes with ST8SIA1           About GenesLikeMe

    Animal Models:
         MGI mouse knock-out St8sia1tm1Kfk for ST8SIA1

       genOway: Develop your customized and physiologically relevant rodent model for ST8SIA1

    miRNA
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    hsa-miR-3194-5p hsa-miR-361-5p hsa-miR-890 hsa-miR-629* hsa-miR-376a* hsa-miR-130a* hsa-miR-3065-5p hsa-miR-23c
    SwitchGear 3'UTR luciferase reporter plasmidST8SIA1 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat ST8SIA1

    Gene Editing
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    GenScript: all cDNA clones in your preferred vector: ST8SIA1 (NM_003034)
    Sino Biological Human cDNA Clone for ST8SIA1
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ST8SIA1


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    SIA8A_HUMAN, Q92185: Golgi apparatus membrane; Single-pass type II membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    golgi apparatus5
    mitochondrion2
    extracellular1
    nucleus1
    plasma membrane1

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005794Golgi apparatus ----
    GO:0016021integral component of membrane TAS8195250
    GO:0030173integral component of Golgi membrane IEA--

    Find genes that share ontologies with ST8SIA1           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for ST8SIA1 About    
    See pathways by source

    SuperPathContained pathways About
    1Glycosphingolipid biosynthesis - ganglio series
    Ganglio Sphingolipid Metabolism0.53
    Glycosphingolipid biosynthesis - ganglio series0.53
    2Metabolism
    Metabolic pathways0.38
    3Glycosphingolipid biosynthesis - lacto and neolacto series
    Glycosphingolipid biosynthesis - lacto and neolacto series
    4Glycosphingolipid biosynthesis - globo series
    Glycosphingolipid biosynthesis - globo series


    Find genes that share SuperPaths with ST8SIA1           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 BioSystems Pathway for ST8SIA1
        Ganglio Sphingolipid Metabolism


    1 Reactome Pathway for ST8SIA1
        Sialic acid metabolism


    4 Kegg Pathways  (Kegg details for ST8SIA1):
        Glycosphingolipid biosynthesis - lacto and neolacto series
    Glycosphingolipid biosynthesis - globo series
    Glycosphingolipid biosynthesis - ganglio series
    Metabolic pathways

    UniProtKB/Swiss-Prot: SIA8A_HUMAN, Q92185
    Pathway: Protein modification; protein glycosylation
    Pathway: Lipid metabolism; sphingolipid metabolism

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ST8SIA1
    Interactions:

        Search GeneGlobe Interaction Network for ST8SIA1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 14)

    Selected Interacting proteins for ST8SIA1 (ENSP000003793534) via UniProtKB, MINT, STRING, and/or I2D (see all 14)

    InteractantInteraction Details
    GeneCardExternal ID(s)
    B4GALNT1ENSP000003415624STRING: ENSP00000341562
    FUT3ENSP000003056034STRING: ENSP00000305603
    FUT4ENSP000003516024STRING: ENSP00000351602
    FUT5ENSP000002526754STRING: ENSP00000252675
    FUT6ENSP000002869554STRING: ENSP00000286955
    About this table

    Gene Ontology (GO): Selected biological process terms (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005975carbohydrate metabolic process TAS8195250
    GO:0006486protein glycosylation IEA--
    GO:0006688glycosphingolipid biosynthetic process TAS8195250
    GO:0008284positive regulation of cell proliferation IEA--
    GO:0034605cellular response to heat IEA--

    Find genes that share ontologies with ST8SIA1           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ST8SIA1 (SIA8A)

    Selected HMDB Compounds for ST8SIA1 (see all 86)    About this table
    CompoundSynonyms CAS #PubMed Ids
    Ganglioside GM1 (d18:0/12:0) --12486725
    Ganglioside GM1 (d18:0/14:0) --12486725
    Ganglioside GM1 (d18:0/16:0) --12486725
    Ganglioside GM1 (d18:0/18:0) --12486725
    Ganglioside GM1 (d18:0/18:1(11Z)) --12486725
    Ganglioside GM1 (d18:0/18:1(9Z)) --12486725
    Ganglioside GM1 (d18:0/20:0) --12486725
    Ganglioside GM1 (d18:0/22:0) --12486725
    Ganglioside GM1 (d18:0/22:1(13Z)) --12486725
    Ganglioside GM1 (d18:0/23:0) --12486725

    2 Novoseek inferred chemical compound relationships for ST8SIA1 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    ganglioside 76.1 6 19125296 (2), 7937974 (1), 18058224 (1), 19428123 (1)
    sialic acid 45.6 1 16014806 (1)



    Find genes that share compounds with ST8SIA1           About GenesLikeMe



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ST8SIA1 gene: 
    NM_003034.3  

    Unigene Cluster for ST8SIA1:

    ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
    Hs.408614  [show with all ESTs]
    Unigene Representative Sequence: NM_003034
    16 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000536535 ENST00000544732 ENST00000537795 ENST00000545524 ENST00000396037(uc001rfo.4)
    ENST00000261197(uc009zix.3) ENST00000545494 ENST00000508924 ENST00000540824
    ENST00000538256 ENST00000541868 ENST00000404299 ENST00000536558 ENST00000381424
    ENST00000545185 ENST00000539510
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    hsa-miR-3194-5p hsa-miR-361-5p hsa-miR-890 hsa-miR-629* hsa-miR-376a* hsa-miR-130a* hsa-miR-3065-5p hsa-miR-23c
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    Additional mRNA sequence: 

    AF088002.1 AK290941.1 AK297310.1 AK315340.1 AY569975.1 BC031081.1 BC046158.1 BC117285.1 
    BC126162.1 D26360.1 EU041716.1 L32867.1 L43494.1 X77922.1 

    12 DOTS entries:

    DT.313214  DT.75149867  DT.95159095  DT.100017699  DT.100749870  DT.97858213  DT.121124256  DT.91906443 
    DT.100702678  DT.121124298  DT.95302000  DT.99993593 

    Selected AceView cDNA sequences (see all 61):

    BM459038 L32867 BC031081 CA418404 X77922 CR623725 L43494 D26360 
    BX104473 BC046158 NM_003034 BQ425160 BU176840 AI051537 BI550329 AI291051 
    AA757329 BC039019 AI804052 BM451235 BX092630 BX349049 AU126278 BI460219 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for ST8SIA1    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d
    SP1:                    -           -     -                                       
    SP2:                    -           -     -     -                                 
    SP3:                                                                              
    SP4:                                            -                                 
    SP5:                                                                              


    ECgene alternative splicing isoforms for ST8SIA1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ST8SIA1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TCTTTTTCTT
    ST8SIA1 Expression
    About this image


    ST8SIA1 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 9) fully expand
     
     Brain (Nervous System)    fully expand to see all 3 entries
             Choroid Plexus Progenitor Cells Choroid Plexus
             Cerebral Cortex
     
     Blood (Cardiovascular System)    fully expand to see all 2 entries
             Common Dendritic Cell Precursors Hematopoietic Bone Marrow
     
     Bone (Muscoskeletal System)
             Bone Marrow
     
     Trophoblast (Extraembryonic Tissues)
             Trophoblast Cells Trophoblast
     
     Ovary (Reproductive System)
             Oviduct
    ST8SIA1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ST8SIA1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.408614

    UniProtKB/Swiss-Prot: SIA8A_HUMAN, Q92185
    Tissue specificity: Strongly expressed in melanoma cell lines, adult and fetal brain and to a lesser extent in
    adult and fetal lung

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ST8SIA1 gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia St8sia11 , 5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 less1, 5 87.42(n)1
    91.83(a)1
      6 (74.78 cM)5
    204491  NM_011374.21  NP_035504.21 
     1428215455 
    chicken
    (Gallus gallus)
    Aves ST8SIA11 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 less 79.57(n)
    82.11(a)
      395860  NM_205008.1  NP_990339.1 
    lizard
    (Anolis carolinensis)
    Reptilia ST8SIA16
    ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltra...
    81(a)
    1 ↔ 1
    5(6632857-6705670)
    African clawed frog
    (Xenopus laevis)
    Amphibia LOC3987352 GD3 synthase short isoform 75.43(n)    AY272057.1 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1003338721 alpha-N-acetylneuraminide alpha-2,8-sialyltransferase-like less 66.46(n)
    65.11(a)
      100333872  XM_002661388.3  XP_002661434.1 


    ENSEMBL Gene Tree for ST8SIA1 (if available)
    TreeFam Gene Tree for ST8SIA1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ST8SIA1 gene
    ST8SIA52  ST8SIA62  ST8SIA32  ST8SIA22  ST8SIA42  
    8 SIMAP similar genes for ST8SIA1 using alignment to 7 protein entries:     SIA8A_HUMAN (see all proteins):
    SIA8F    ST8SIA6    ST8Sia VI    ST8SIA5    ST3GAL1    ST8SIA3
    ST8SIA2    ST8SIA4

    Find genes that share paralogs with ST8SIA1           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ST8SIA1 (see all 2765)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1430071361,2
    C--22345899(+) AGACT-/AAAAGG 1 -- ds50010--------
    rs1513387141,2
    --22345909(+) GCACAC/TTTGGG 1 -- ds50010--------
    rs567144181,2
    F--22346208(+) ATGACT/GTTTCA 1 -- ds50011Minor allele frequency- G:0.02EA 120
    rs1394460091,2
    --22346254(+) ATACAA/TAACAA 1 -- ds50010--------
    rs1449886881,2
    --22346260(+) AACAAA/GGCAGG 1 -- ds50010--------
    rs1157864461,2
    F--22346284(+) AGAGCG/ATCACC 1 -- ds50011Minor allele frequency- A:0.03WA 118
    rs1809226371,2
    --22346289(+) GTCACC/TCATTT 1 -- ds50010--------
    rs774316651,2
    C,F--22346402(+) CTTACC/TGAACC 1 -- ut311Minor allele frequency- T:0.05EA 120
    rs1859613701,2
    C--22346423(+) CAGCCA/GTAATT 1 -- ut310--------
    rs1116317141,2
    C,F--22346448(+) AAAGAA/TAAAGA 1 -- ut312Minor allele frequency- T:0.02CSA WA 120

    HapMap Linkage Disequilibrium report for ST8SIA1 (22216707 - 22466707 bp, first 250kb of ST8SIA1)

    Structural Variations
         Database of Genomic Variants (DGV) 9 variations for ST8SIA1:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv435637CNV Deletion17901297
    esv269014CNV Insertion20981092
    nsv521274CNV Loss19592680
    esv23565CNV Loss19812545
    nsv482978CNV Loss15286789
    esv33913CNV Gain17666407
    essv12236CNV CNV17122850
    essv14178CNV CNV17122850
    dgv482e1CNV Complex17122850

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 601123    OMIM disorders: --


    Find genes that share disorders with ST8SIA1           About GenesLikeMe

    Genetic Association Database (GAD): ST8SIA1
    Human Genome Epidemiology (HuGE) Navigator: ST8SIA1 (3 documents)

    Export disorders for ST8SIA1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ST8SIA1 gene, integrated from 10 sources (see all 44):
    (articles sorted by number of sources associating them with ST8SIA1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Variants of ST8SIA1 are associated with risk of developing multiple sclerosis. (PubMed id 18612409)1, 4, 9 Husain S....Vitale E. (PLoS ONE 2008)
    2. Variants in ST8SIA1 do not play a major role in susceptibility to multiple sclerosis in Canadian families. (PubMed id 19428123)1, 4, 9 Ramagopalan S.V....Ebers G.C. (J. Neuroimmunol. 2009)
    3. Isolation of GD3 synthase gene by expression cloning of GM3 alpha- 2,8-sialyltransferase cDNA using anti-GD2 monoclonal antibody. (PubMed id 7937974)1, 2, 9 Haraguchi M.... Furukawa K. (Proc. Natl. Acad. Sci. U.S.A. 1994)
    4. Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease. (PubMed id 20708005)1, 4 Chalasani N....Rotter J.I. (Gastroenterology 2010)
    5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (Mol. Med. 2010)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    7. Expression cloning of a human GT3 synthase. GD3 and GT3 are synthesized by a single enzyme. (PubMed id 8631981)1, 2 Nakayama J.... Fukuda M. (J. Biol. Chem. 1996)
    8. Expression cloning of a GM3-specific alpha-2,8-sialyltransferase (GD3 synthase). (PubMed id 8195250)1, 2 Sasaki K.... Nishi T. (J. Biol. Chem. 1994)
    9. Expression cloning of a CMP-NeuAc:NeuAc alpha 2-3Gal beta 1-4Glc beta 1-1'Cer alpha 2,8-sialyltransferase (GD3 synthase) from human melanoma cells. (PubMed id 8058740)1, 2 Nara K.... Sanai Y. (Proc. Natl. Acad. Sci. U.S.A. 1994)
    10. Expression cloning of a novel Gal beta (1-3/1-4) GlcNAc alpha 2,3- sialyltransferase using lectin resistance selection. (PubMed id 7901202)1, 3 Sasaki K.... Hasegawa M. (J. Biol. Chem. 1993)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 6489 HGNC: 10869 AceView: SIAT8A Ensembl:ENSG00000111728 euGenes: HUgn6489
    ECgene: ST8SIA1 Kegg: 6489 H-InvDB: ST8SIA1

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ST8SIA1 Pharmacogenomics, SNPs, Pathways
    GGDBhttp://jcggdb.jp/rcmg/ggdb/Homolog?cat=symbol&symbol=ST8SIA1
    Functional Glycomics Gateway - GTasehttp://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/viewGlycoEnzyme.jsp?gbpId=gt_hum_636

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ST8SIA1 gene:
    Search GeneIP for patents involving ST8SIA1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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