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Aliases for ST7-OT4 Gene

Subcategory (RNA class) for ST7-OT4 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for ST7-OT4 Gene

  • ST7 Overlapping Transcript 4 2 3
  • ST7 Overlapping Transcript 4 (Non-Protein Coding) 2 3
  • ST7 Overlapping Transcript 4 (Non-Coding RNA) 3
  • Non-Protein Coding RNA 42 2
  • NCRNA00042 3
  • ST7OT4 3

External Ids for ST7-OT4 Gene

Previous Symbols for ST7-OT4 Gene

  • ST7OT4

Summaries for ST7-OT4 Gene

GeneCards Summary for ST7-OT4 Gene

ST7-OT4 (ST7 Overlapping Transcript 4) is a RNA Gene, and belongs to ncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST7-OT4 Gene

Genomics for ST7-OT4 Gene

Genomic Location for ST7-OT4 Gene

Start:
116,953,899 bp from pter
End:
117,098,806 bp from pter
Size:
144,908 bases
Orientation:
Plus strand

Genomic View for ST7-OT4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ST7-OT4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST7-OT4 Gene

No data available for Regulatory Elements for ST7-OT4 Gene

Proteins for ST7-OT4 Gene

Post-translational modifications for ST7-OT4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ST7-OT4 Gene

Domains for ST7-OT4 Gene

Gene Families for ST7-OT4 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with ST7-OT4: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for ST7-OT4 Gene

Function for ST7-OT4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ST7-OT4 Gene

Localization for ST7-OT4 Gene

No data available for Gene Ontology (GO) - Cellular Components for ST7-OT4 Gene

Pathways for ST7-OT4 Gene

SuperPathways for ST7-OT4 Gene

No Data Available

Interacting Proteins for ST7-OT4 Gene

Gene Ontology (GO) - Biological Process for ST7-OT4 Gene

None

No data available for Pathways by source for ST7-OT4 Gene

Transcripts for ST7-OT4 Gene

mRNA/cDNA for ST7-OT4 Gene

(2) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ST7-OT4 Gene

ST7 overlapping transcript 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ST7-OT4 Gene

No ASD Table

Relevant External Links for ST7-OT4 Gene

GeneLoc Exon Structure for
ST7-OT4
ECgene alternative splicing isoforms for
ST7-OT4

Expression for ST7-OT4 Gene

mRNA expression in normal human tissues for ST7-OT4 Gene

mRNA differential expression in normal tissues according to GTEx for ST7-OT4 Gene

This gene is overexpressed in Testis (21.5).

SOURCE GeneReport for Unigene cluster for ST7-OT4 Gene Hs.662742

genes like me logo Genes that share expressions with ST7-OT4: view

Orthologs for ST7-OT4 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ST7-OT4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ST7-OT4 37
  • 98 (a)
OneToOne
Species with no ortholog for ST7-OT4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ST7-OT4 Gene

ENSEMBL:
Gene Tree for ST7-OT4 (if available)
TreeFam:
Gene Tree for ST7-OT4 (if available)

Paralogs for ST7-OT4 Gene

No data available for Paralogs for ST7-OT4 Gene

Variants for ST7-OT4 Gene

Structural Variations from Database of Genomic Variants (DGV) for ST7-OT4 Gene

Variant ID Type Subtype PubMed ID
nsv7405 OTHER Inversion 18451855
nsv831107 CNV Gain 17160897
dgv7465n71 CNV Gain 21882294
esv2659068 CNV Deletion 23128226

Relevant External Links for ST7-OT4 Gene

HapMap Linkage Disequilibrium report
ST7-OT4

No data available for Sequence variations from dbSNP and Humsavar for ST7-OT4 Gene

Disorders for ST7-OT4 Gene

No disorders were found for ST7-OT4 Gene.

No data available for UniProtKB/Swiss-Prot for ST7-OT4 Gene

Publications for ST7-OT4 Gene

  1. The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system. (PMID: 12213198) Vincent J.B. … Scherer S.W. (Genomics 2002) 2 3 23
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ST7-OT4 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ST7-OT4
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ST7-OT4
    • Block miRNA regulation of ST7-OT4 using miScript Target Protectors

    Sources for ST7-OT4 Gene

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