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Aliases for ST7-AS2 Gene

Subcategory (RNA class) for ST7-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ST7-AS2 Gene

  • ST7 Antisense RNA 2 2 3 5
  • ST7 Overlapping Transcript 2 (Antisense Non-Coding RNA) 2 3
  • ST7 Overlapping Transcript 2 (Non-Protein Coding) 2 3
  • ST7 Antisense RNA 2 (Non-Protein Coding) 2 3
  • ST7 Overlapping Transcript Antisense 2 2
  • ST7AS2 3
  • ST7OT2 3

External Ids for ST7-AS2 Gene

Previous HGNC Symbols for ST7-AS2 Gene

  • ST7OT2

Previous GeneCards Identifiers for ST7-AS2 Gene

  • GC07M116714

Summaries for ST7-AS2 Gene

GeneCards Summary for ST7-AS2 Gene

ST7-AS2 (ST7 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST7-AS2 Gene

Genomics for ST7-AS2 Gene

Regulatory Elements for ST7-AS2 Gene

Enhancers for ST7-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F117149 0.2 ENCODE 0.8 -2.7 -2672 0.2 ZNF512 ST7-AS2 ENSG00000275054
GH07F117143 0.2 Ensembl 0.8 +3.1 3080 0.8 ZNF664 JUN FOS HOMEZ ST7-AS2 ENSG00000274344
GH07F117138 0.5 Ensembl ENCODE 0.4 +7.3 7280 1.2 ZNF664 ST7-AS2 ENSG00000274344
GH07F117152 0.6 ENCODE 0.4 -6.4 -6367 1.1 HLF NR2F6 NR2F2 ST7-AS2 ENSG00000275054
GH07F117153 0.7 FANTOM5 0.4 -7.2 -7216 0.4 ST7-AS2 ENSG00000275054
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ST7-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for ST7-AS2 Gene

Chromosome:
7
Start:
117,072,072 bp from pter
End:
117,146,480 bp from pter
Size:
74,409 bases
Orientation:
Minus strand

Genomic View for ST7-AS2 Gene

Genes around ST7-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST7-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST7-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST7-AS2 Gene

Proteins for ST7-AS2 Gene

Post-translational modifications for ST7-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ST7-AS2 Gene

Domains & Families for ST7-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ST7-AS2 Gene

Function for ST7-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ST7-AS2 Gene

Localization for ST7-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ST7-AS2 Gene

Pathways & Interactions for ST7-AS2 Gene

SuperPathways for ST7-AS2 Gene

No Data Available

Interacting Proteins for ST7-AS2 Gene

Gene Ontology (GO) - Biological Process for ST7-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ST7-AS2 Gene

Transcripts for ST7-AS2 Gene

mRNA/cDNA for ST7-AS2 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ST7-AS2 Gene

No ASD Table

Relevant External Links for ST7-AS2 Gene

GeneLoc Exon Structure for
ST7-AS2
ECgene alternative splicing isoforms for
ST7-AS2

Expression for ST7-AS2 Gene

mRNA expression in normal human tissues for ST7-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for ST7-AS2 Gene

This gene is overexpressed in Testis (x23.8).

SOURCE GeneReport for Unigene cluster for ST7-AS2 Gene:

Hs.628891
genes like me logo Genes that share expression patterns with ST7-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ST7-AS2 Gene

Orthologs for ST7-AS2 Gene

Evolution for ST7-AS2 Gene

ENSEMBL:
Gene Tree for ST7-AS2 (if available)
TreeFam:
Gene Tree for ST7-AS2 (if available)

No data available for Orthologs for ST7-AS2 Gene

Paralogs for ST7-AS2 Gene

No data available for Paralogs for ST7-AS2 Gene

Variants for ST7-AS2 Gene

Sequence variations from dbSNP and Humsavar for ST7-AS2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs550492993 Likely pathogenic 117,130,530(+) TACTA(C/G/T)GACAT intron-variant, nc-transcript-variant, reference, synonymous-codon, stop-gained
rs10224047 -- 117,146,068(+) TGAGT(A/G)TTACA intron-variant, upstream-variant-2KB
rs10224415 -- 117,140,445(+) ctggg(A/G)gaatt intron-variant
rs10224794 -- 117,140,686(+) TATAT(A/G)TGCGT intron-variant
rs10228205 -- 117,147,122(+) TTTCA(A/G)TCTGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ST7-AS2 Gene

Variant ID Type Subtype PubMed ID
esv3307357 CNV mobile element insertion 20981092
esv3399621 CNV insertion 20981092
nsv7405 OTHER inversion 18451855
nsv831108 CNV gain 17160897

Relevant External Links for ST7-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ST7-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ST7-AS2 Gene

Disorders for ST7-AS2 Gene

Relevant External Links for ST7-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ST7-AS2

No disorders were found for ST7-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ST7-AS2 Gene

Publications for ST7-AS2 Gene

  1. The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system. (PMID: 12213198) Vincent J.B. … Scherer S.W. (Genomics 2002) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for ST7-AS2 Gene

Sources for ST7-AS2 Gene

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