Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ST7-AS2 Gene

Subcategory (RNA class) for ST7-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ST7-AS2 Gene

  • ST7 Antisense RNA 2 2 3 5
  • ST7 Overlapping Transcript 2 (Antisense Non-Coding RNA) 2 3
  • ST7 Overlapping Transcript 2 (Non-Protein Coding) 2 3
  • ST7 Antisense RNA 2 (Non-Protein Coding) 2 3
  • ST7 Overlapping Transcript Antisense 2 2
  • ST7AS2 3
  • ST7OT2 3

External Ids for ST7-AS2 Gene

Previous HGNC Symbols for ST7-AS2 Gene

  • ST7OT2

Previous GeneCards Identifiers for ST7-AS2 Gene

  • GC07M116714

Summaries for ST7-AS2 Gene

GeneCards Summary for ST7-AS2 Gene

ST7-AS2 (ST7 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ST7-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST7-AS2 Gene

Genomics for ST7-AS2 Gene

GeneHancer (GH) Regulatory Elements for ST7-AS2 Gene

Promoters and enhancers for ST7-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I117131 Enhancer 0.9 Ensembl ENCODE 0.4 +13.2 13204 4.1 SCRT1 STAT1 JUN SIN3A CEBPB EP300 RFX5 SP1 JUND POLR2A ST7-AS2 ENSG00000274344 ST7 ST7-OT3
GH07I117124 Enhancer 1.2 Ensembl ENCODE 0.3 +21.4 21415 2.1 PKNOX1 CLOCK FOXA2 SMAD1 NEUROD1 FEZF1 IRF4 YY1 ZNF766 FOS ST7-AS1 ENSG00000228368 ENSG00000274344 ST7-AS2 ST7 ST7-OT3
GH07I117157 Enhancer 0.8 Ensembl ENCODE 0.4 -11.3 -11285 1.3 CTCF RAD21 YY1 NFIC JUND POLR2A VEZF1 HNF4A PRDM10 RCOR1 ST7-AS2 ENSG00000275054 ST7 ST7-OT3
GH07I117119 Enhancer 1 Ensembl ENCODE 0.3 +26.9 26879 0.4 HDAC1 FOXA2 RB1 ZNF2 RAD21 ARID2 ZNF143 RCOR1 BCLAF1 IKZF2 ENSG00000274344 ST7-AS2 ST7 ST7-OT3
GH07I117110 Enhancer 0.9 Ensembl ENCODE 0.3 +35.6 35582 1.4 PKNOX1 EBF1 DPF2 ATF2 RELA OSR2 CBX8 ZSCAN5C IKZF1 ATF7 ENSG00000274344 ST7-AS2 MIR6132 ST7 ST7-OT3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ST7-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ST7-AS2 Gene

Genomic Locations for ST7-AS2 Gene
chr7:117,072,072-117,146,480
(GRCh38/hg38)
Size:
74,409 bases
Orientation:
Minus strand
chr7:116,712,126-116,786,534
(GRCh37/hg19)

Genomic View for ST7-AS2 Gene

Genes around ST7-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST7-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST7-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST7-AS2 Gene

Proteins for ST7-AS2 Gene

Post-translational modifications for ST7-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ST7-AS2 Gene

Domains & Families for ST7-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ST7-AS2 Gene

Function for ST7-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ST7-AS2 Gene

Localization for ST7-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ST7-AS2 Gene

Pathways & Interactions for ST7-AS2 Gene

SuperPathways for ST7-AS2 Gene

No Data Available

Interacting Proteins for ST7-AS2 Gene

Gene Ontology (GO) - Biological Process for ST7-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ST7-AS2 Gene

Drugs & Compounds for ST7-AS2 Gene

No Compound Related Data Available

Transcripts for ST7-AS2 Gene

mRNA/cDNA for ST7-AS2 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ST7-AS2 Gene

No ASD Table

Relevant External Links for ST7-AS2 Gene

GeneLoc Exon Structure for
ST7-AS2
ECgene alternative splicing isoforms for
ST7-AS2

Expression for ST7-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ST7-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for ST7-AS2 Gene

This gene is overexpressed in Testis (x23.8).

SOURCE GeneReport for Unigene cluster for ST7-AS2 Gene:

Hs.628891
genes like me logo Genes that share expression patterns with ST7-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ST7-AS2 Gene

Orthologs for ST7-AS2 Gene

Evolution for ST7-AS2 Gene

ENSEMBL:
Gene Tree for ST7-AS2 (if available)
TreeFam:
Gene Tree for ST7-AS2 (if available)

No data available for Orthologs for ST7-AS2 Gene

Paralogs for ST7-AS2 Gene

No data available for Paralogs for ST7-AS2 Gene

Variants for ST7-AS2 Gene

Sequence variations from dbSNP and Humsavar for ST7-AS2 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs550492993 likely-pathogenic, Brain atrophy, Global developmental delay, Intractable seizure 117,130,530(-) T/C/G genic_upstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs1000000059 -- 117,106,550(-) G/A genic_downstream_transcript_variant, genic_upstream_transcript_variant
rs1000044638 -- 117,108,579(-) T/C genic_downstream_transcript_variant, genic_upstream_transcript_variant
rs1000063649 -- 117,099,678(-) A/G genic_downstream_transcript_variant, genic_upstream_transcript_variant
rs1000072169 -- 117,101,262(-) A/T genic_downstream_transcript_variant, genic_upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ST7-AS2 Gene

Variant ID Type Subtype PubMed ID
esv3307357 CNV mobile element insertion 20981092
esv3399621 CNV insertion 20981092
nsv7405 OTHER inversion 18451855
nsv831108 CNV gain 17160897

Additional Variant Information for ST7-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ST7-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ST7-AS2 Gene

Disorders for ST7-AS2 Gene

Additional Disease Information for ST7-AS2

No disorders were found for ST7-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ST7-AS2 Gene

Publications for ST7-AS2 Gene

  1. The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system. (PMID: 12213198) Vincent JB … Scherer SW (Genomics 2002) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for ST7-AS2 Gene

Sources for ST7-AS2 Gene

Content
Loading form....