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Aliases for ST7-AS1 Gene

Subcategory (RNA class) for ST7-AS1 Gene

lncRNA

Quality Score for this RNA gene is

5

Aliases for ST7-AS1 Gene

  • ST7 Antisense RNA 1 2 3 5
  • ST7 Overlapping Transcript 1 (Antisense Non-Coding RNA) 2 3
  • ST7 Overlapping Transcript 1 (Non-Protein Coding) 2 3
  • ST7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ST7 Overlapping Transcript Antisense 1 2 3
  • ST7AS1 3
  • ST7OT1 3

External Ids for ST7-AS1 Gene

Previous HGNC Symbols for ST7-AS1 Gene

  • ST7OT1

Previous GeneCards Identifiers for ST7-AS1 Gene

  • GC07M116593

Summaries for ST7-AS1 Gene

GeneCards Summary for ST7-AS1 Gene

ST7-AS1 (ST7 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for ST7-AS1 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

Additional gene information for ST7-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ST7-AS1 Gene

Genomics for ST7-AS1 Gene

GeneHancer (GH) Regulatory Elements for ST7-AS1 Gene

Promoters and enhancers for ST7-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I116951 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 555.5 +0.1 130 5 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ST7-AS1 ENSG00000275359 ENSG00000277583 ENSG00000273571 ST7 ST7-OT3 ST7-OT4 ENSG00000273596 CAPZA2 ENSG00000276100
GH07I116209 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 52.6 +739.6 739574 10 FEZF1 DMAP1 YY1 ZNF213 ZNF143 ZNF548 ZNF263 SP3 NFYC MEF2D TES ST7-AS1 TFEC LOC102724434 ENSG00000279086 GC07P116253
GH07I116799 Enhancer 0.7 dbSUPER 60.8 +154.9 154872 0.8 ZFP64 ZNF140 ZNF266 ZNF697 ZNF664 ZNF791 ZNF213 RBAK ZNF354C ZNF19 ST7-AS1 MET CAPZA2 GC07P116736
GH07I116861 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14.2 +91.0 90974 3.1 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B CAPZA2 ST7-AS1 LOC100418716
GH07I116540 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 21.7 +411.5 411501 3.9 PKNOX1 INSM2 FEZF1 ZNF335 ZNF366 ZSCAN5C ATF7 ZNF391 FOS ZNF362 CAV2 ST7-AS1 ENSG00000237813 ENSG00000243220 CAV1 ENSG00000235427
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ST7-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ST7-AS1 Gene

Genomic Locations for ST7-AS1 Gene
chr7:116,952,446-116,954,334
(GRCh38/hg38)
Size:
1,889 bases
Orientation:
Minus strand
chr7:116,592,500-116,594,388
(GRCh37/hg19)

Genomic View for ST7-AS1 Gene

Genes around ST7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST7-AS1 Gene

ORGUL Member Location for ST7-AS1 Gene

ORGUL Member Location for ST7-AS1 gene

Proteins for ST7-AS1 Gene

Post-translational modifications for ST7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ST7-AS1 Gene

Domains & Families for ST7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ST7-AS1 Gene

Function for ST7-AS1 Gene

Phenotypes From GWAS Catalog for ST7-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ST7-AS1 Gene

Localization for ST7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ST7-AS1 Gene

Pathways & Interactions for ST7-AS1 Gene

SuperPathways for ST7-AS1 Gene

No Data Available

Interacting Proteins for ST7-AS1 Gene

Gene Ontology (GO) - Biological Process for ST7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ST7-AS1 Gene

Drugs & Compounds for ST7-AS1 Gene

No Compound Related Data Available

Transcripts for ST7-AS1 Gene

mRNA/cDNA for ST7-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ST7-AS1 Gene

ST7 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ST7-AS1 Gene

No ASD Table

Relevant External Links for ST7-AS1 Gene

GeneLoc Exon Structure for
ST7-AS1
ECgene alternative splicing isoforms for
ST7-AS1

Expression for ST7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ST7-AS1 Gene

SOURCE GeneReport for Unigene cluster for ST7-AS1 Gene:

Hs.597516
genes like me logo Genes that share expression patterns with ST7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ST7-AS1 Gene

Orthologs for ST7-AS1 Gene

Evolution for ST7-AS1 Gene

ENSEMBL:
Gene Tree for ST7-AS1 (if available)
TreeFam:
Gene Tree for ST7-AS1 (if available)

No data available for Orthologs for ST7-AS1 Gene

Paralogs for ST7-AS1 Gene

No data available for Paralogs for ST7-AS1 Gene

Variants for ST7-AS1 Gene

Sequence variations from dbSNP and Humsavar for ST7-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000038439 -- 116,955,388(-) T/C upstream_transcript_variant
rs1000812200 -- 116,952,645(-) C/T non_coding_transcript_variant
rs1001187089 -- 116,956,274(-) G/A upstream_transcript_variant
rs1001527391 -- 116,952,869(-) T/C non_coding_transcript_variant
rs1001558540 -- 116,953,191(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ST7-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1324e214 CNV gain 21293372
esv2659068 CNV deletion 23128226
esv3576422 CNV gain 25503493
esv3614703 CNV gain 21293372
esv3614704 CNV gain 21293372
esv3614705 CNV loss 21293372
esv3891196 CNV gain 25118596
nsv1075053 CNV deletion 25765185
nsv1144198 CNV deletion 24896259
nsv7405 OTHER inversion 18451855
nsv831107 CNV gain 17160897

Additional Variant Information for ST7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ST7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ST7-AS1 Gene

Disorders for ST7-AS1 Gene

Additional Disease Information for ST7-AS1

No disorders were found for ST7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ST7-AS1 Gene

Publications for ST7-AS1 Gene

  1. The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system. (PMID: 12213198) Vincent JB … Scherer SW (Genomics 2002) 2 3 58
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for ST7-AS1 Gene

Sources for ST7-AS1 Gene

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