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Aliases for ST7-AS1 Gene

Subcategory (RNA class) for ST7-AS1 Gene

lncRNA

Quality Score for this RNA gene is

5

Aliases for ST7-AS1 Gene

  • ST7 Antisense RNA 1 2 3 5
  • ST7 Overlapping Transcript 1 (Antisense Non-Coding RNA) 2 3
  • ST7 Overlapping Transcript 1 (Non-Protein Coding) 2 3
  • ST7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ST7 Overlapping Transcript Antisense 1 2 3
  • ST7AS1 3
  • ST7OT1 3

External Ids for ST7-AS1 Gene

Previous HGNC Symbols for ST7-AS1 Gene

  • ST7OT1

Previous GeneCards Identifiers for ST7-AS1 Gene

  • GC07M116593

Summaries for ST7-AS1 Gene

GeneCards Summary for ST7-AS1 Gene

ST7-AS1 (ST7 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for ST7-AS1 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

Additional gene information for ST7-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ST7-AS1 Gene

Genomics for ST7-AS1 Gene

Regulatory Elements for ST7-AS1 Gene

Enhancers for ST7-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H116209 1.7 Ensembl ENCODE dbSUPER 52.6 +739.6 739574 10 FEZF1 DMAP1 YY1 ZNF143 ZNF548 SP3 NFYC MEF2D ZNF610 GLIS1 ST7-AS1 TES LOC102724407 LOC100506489 ENSG00000228368 LINC01392 TFEC LOC102724434 ENSG00000279086 GC07P116253
GH07H116799 0.8 dbSUPER 60.8 +154.9 154872 0.8 ZFP64 ZNF140 ZNF266 ZNF697 ZNF664 ZNF791 ZNF354C RBAK ZNF19 ZNF433 ST7-AS1 MET CAPZA2 GC07P116736
GH07H116352 2.4 VISTA FANTOM5 Ensembl ENCODE dbSUPER 12.3 +598.6 598640 7.3 PKNOX1 ATF1 SIN3A BRCA1 ZNF2 YY1 ZNF302 GATA2 FOS REST ST7-AS1 ENSG00000243243 ENSG00000235427 ENSG00000243220 CAV1 CAV2 ENSG00000237813 PIR33191
GH07H116540 1.3 FANTOM5 ENCODE dbSUPER 21.7 +411.5 411501 3.9 PKNOX1 JUN INSM2 FEZF1 GLI2 ZNF366 ZSCAN5C PATZ1 FOS ZNF600 CAV2 ST7-AS1 ENSG00000237813 ENSG00000243220 CAV1 ENSG00000235427
GH07H116876 1.6 Ensembl ENCODE dbSUPER 14.3 +77.2 77152 1.9 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 ATF7 ZC3H11A ST7-AS1 ENSG00000243243 MET TES LOC100418716 GC07M116910 ENSG00000252115
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ST7-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ST7-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000217200 434 2201 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1

Genomic Locations for ST7-AS1 Gene

Genomic Locations for ST7-AS1 Gene
chr7:116,952,446-116,954,334
(GRCh38/hg38)
Size:
1,889 bases
Orientation:
Minus strand
chr7:116,592,500-116,594,388
(GRCh37/hg19)

Genomic View for ST7-AS1 Gene

Genes around ST7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST7-AS1 Gene

ORGUL Member Location for ST7-AS1 Gene

ORGUL Member Location for ST7-AS1 gene

Proteins for ST7-AS1 Gene

Post-translational modifications for ST7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ST7-AS1 Gene

Domains & Families for ST7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ST7-AS1 Gene

Function for ST7-AS1 Gene

Phenotypes From GWAS Catalog for ST7-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ST7-AS1 Gene

Localization for ST7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ST7-AS1 Gene

Pathways & Interactions for ST7-AS1 Gene

SuperPathways for ST7-AS1 Gene

No Data Available

Interacting Proteins for ST7-AS1 Gene

Gene Ontology (GO) - Biological Process for ST7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ST7-AS1 Gene

Drugs & Compounds for ST7-AS1 Gene

No Compound Related Data Available

Transcripts for ST7-AS1 Gene

mRNA/cDNA for ST7-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ST7-AS1 Gene

ST7 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ST7-AS1 Gene

No ASD Table

Relevant External Links for ST7-AS1 Gene

GeneLoc Exon Structure for
ST7-AS1
ECgene alternative splicing isoforms for
ST7-AS1

Expression for ST7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ST7-AS1 Gene

SOURCE GeneReport for Unigene cluster for ST7-AS1 Gene:

Hs.597516
genes like me logo Genes that share expression patterns with ST7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ST7-AS1 Gene

Orthologs for ST7-AS1 Gene

Evolution for ST7-AS1 Gene

ENSEMBL:
Gene Tree for ST7-AS1 (if available)
TreeFam:
Gene Tree for ST7-AS1 (if available)

No data available for Orthologs for ST7-AS1 Gene

Paralogs for ST7-AS1 Gene

No data available for Paralogs for ST7-AS1 Gene

Variants for ST7-AS1 Gene

Sequence variations from dbSNP and Humsavar for ST7-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000038439 -- 116,955,388(+) CTTGC(C/T)GTCAT intron-variant, upstream-variant-2KB
rs1000812200 -- 116,952,645(+) AACAA(C/T)AAAAC nc-transcript-variant, upstream-variant-2KB
rs1001187089 -- 116,956,274(+) TTTCT(A/G)TACTG intron-variant, upstream-variant-2KB
rs1001527391 -- 116,952,869(+) CTTGC(C/T)GAATA nc-transcript-variant, upstream-variant-2KB
rs1001558540 -- 116,953,191(+) ATGCG(A/G)GTTGT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ST7-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2659068 CNV deletion 23128226
esv3576422 CNV gain 25503493
esv3614703 CNV gain 21293372
esv3614704 CNV gain 21293372
esv3614705 CNV loss 21293372
esv3891196 CNV gain 25118596
nsv1075053 CNV deletion 25765185
nsv1144198 CNV deletion 24896259
nsv7405 OTHER inversion 18451855
nsv831107 CNV gain 17160897
dgv1324e214 CNV gain 21293372

Relevant External Links for ST7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ST7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ST7-AS1 Gene

Disorders for ST7-AS1 Gene

Relevant External Links for ST7-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ST7-AS1

No disorders were found for ST7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ST7-AS1 Gene

Publications for ST7-AS1 Gene

  1. The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system. (PMID: 12213198) Vincent JB … Scherer SW (Genomics 2002) 2 3 60
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for ST7-AS1 Gene

Sources for ST7-AS1 Gene

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