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Aliases for ST6GALNAC5 Gene

Aliases for ST6GALNAC5 Gene

  • ST6 (Alpha-N-Acetyl-Neuraminyl-2,3-Beta-Galactosyl-1,3)-N-Acetylgalactosaminide Alpha-2,6-Sialyltransferase 5 2 3
  • SIAT7E 3 4 6
  • Sialyltransferase 7 ((Alpha-N-Acetylneuraminyl-2,3-Beta-Galactosyl-1,3)-N-Acetyl Galactosaminide Alpha-2,6-Sialyltransferase) E 2 3
  • GalNAc Alpha-2,6-Sialyltransferase V 3 4
  • Sialyltransferase 7E 3 4
  • GD1 Alpha Synthase 3 4
  • ST6GalNAc V 3 4
  • ST6GalNAcV 3 4
  • SIAT7-E 3 4
  • Sialyltransferase 7 (Alpha-N-Acetylneuraminyl-2,3-Beta-Galactosyl-1,3)-N-Acetyl Galactosaminide Alpha-2,6-Sialyltransferase) E 3
  • Alpha-N-Acetylneuraminyl 2,3-Betagalactosyl-1,3)-N-Acetyl Galactosaminide Alpha-2,6-Sialyltransferase E 3
  • ST6 Neuraminyl-2,3-Beta-Galactosyl-1,3)-N-Acetylgalactosaminide Alpha-2,6-Sialyltransferase 5 3
  • Alpha-N-Acetylgalactosaminide Alpha-2,6-Sialyltransferase 5 3
  • Alpha-N-Acetylgalactosaminide Alpha-2,6-Sialyltransferase V 3
  • EC 2.4.99.7 63
  • EC 2.4.99.- 4
  • EC 2.4.99 63

External Ids for ST6GALNAC5 Gene

Previous HGNC Symbols for ST6GALNAC5 Gene

  • SIAT7E

Previous GeneCards Identifiers for ST6GALNAC5 Gene

  • GC01P077046
  • GC01P077333
  • GC01P075464

Summaries for ST6GALNAC5 Gene

Entrez Gene Summary for ST6GALNAC5 Gene

  • ST6GALNAC5 belongs to a family of sialyltransferases that modify proteins and ceramides on the cell surface to alter cell-cell or cell-extracellular matrix interactions (Tsuchida et al., 2003 [PubMed 12668675]).[supplied by OMIM, Mar 2008]

GeneCards Summary for ST6GALNAC5 Gene

ST6GALNAC5 (ST6 (Alpha-N-Acetyl-Neuraminyl-2,3-Beta-Galactosyl-1,3)-N-Acetylgalactosaminide Alpha-2,6-Sialyltransferase 5) is a Protein Coding gene. Among its related pathways are Metabolism and Glycosphingolipid biosynthesis - ganglio series. GO annotations related to this gene include sialyltransferase activity and alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. An important paralog of this gene is ST6GAL1.

UniProtKB/Swiss-Prot for ST6GALNAC5 Gene

  • Involved in the biosynthesis of ganglioside GD1a from GM1b. It exhibits higher activity with glycolipids than with glycoproteins (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST6GALNAC5 Gene

Genomics for ST6GALNAC5 Gene

Regulatory Elements for ST6GALNAC5 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ST6GALNAC5 Gene

Start:
76,867,441 bp from pter
End:
77,067,538 bp from pter
Size:
200,098 bases
Orientation:
Plus strand

Genomic View for ST6GALNAC5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ST6GALNAC5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST6GALNAC5 Gene

Proteins for ST6GALNAC5 Gene

  • Protein details for ST6GALNAC5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BVH7-SIA7E_HUMAN
    Recommended name:
    Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
    Protein Accession:
    Q9BVH7
    Secondary Accessions:
    • B1AK82

    Protein attributes for ST6GALNAC5 Gene

    Size:
    336 amino acids
    Molecular mass:
    38443 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ST6GALNAC5 Gene

Proteomics data for ST6GALNAC5 Gene at MOPED

Selected DME Specific Peptides for ST6GALNAC5 Gene

Post-translational modifications for ST6GALNAC5 Gene

  • Glycosylation at Asn137 and Asn161
  • Modification sites at PhosphoSitePlus

Other Protein References for ST6GALNAC5 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for ST6GALNAC5 ("ST6 GalNAc alpha-2,6-sialyltransferaseV/ST6GALNAC5")

Domains for ST6GALNAC5 Gene

Gene Families for ST6GALNAC5 Gene

HGNC:
  • ST3G :Sialyltransferases

Protein Domains for ST6GALNAC5 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BVH7

UniProtKB/Swiss-Prot:

SIA7E_HUMAN :
  • Q9BVH7
Family:
  • Belongs to the glycosyltransferase 29 family.
genes like me logo Genes that share domains with ST6GALNAC5: view

Function for ST6GALNAC5 Gene

Molecular function for ST6GALNAC5 Gene

UniProtKB/Swiss-Prot Function: Involved in the biosynthesis of ganglioside GD1a from GM1b. It exhibits higher activity with glycolipids than with glycoproteins (By similarity).

Enzyme Numbers (IUBMB) for ST6GALNAC5 Gene

Gene Ontology (GO) - Molecular Function for ST6GALNAC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity ISS --
GO:0008373 sialyltransferase activity ISS 12668675
genes like me logo Genes that share ontologies with ST6GALNAC5: view

Phenotypes for ST6GALNAC5 Gene

GenomeRNAi human phenotypes for ST6GALNAC5:
genes like me logo Genes that share phenotypes with ST6GALNAC5: view

Animal Model Products

miRNA for ST6GALNAC5 Gene

miRTarBase miRNAs that target ST6GALNAC5

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for ST6GALNAC5 Gene

Localization for ST6GALNAC5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ST6GALNAC5 Gene

Golgi apparatus membrane; Single-pass type II membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ST6GALNAC5 Gene COMPARTMENTS Subcellular localization image for ST6GALNAC5 gene
Compartment Confidence
golgi apparatus 5
extracellular 2
endoplasmic reticulum 1
lysosome 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for ST6GALNAC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane TAS --
GO:0005794 Golgi apparatus --
GO:0016021 integral component of membrane IEA --
GO:0030173 integral component of Golgi membrane --
genes like me logo Genes that share ontologies with ST6GALNAC5: view

Pathways for ST6GALNAC5 Gene

genes like me logo Genes that share pathways with ST6GALNAC5: view

Pathways by source for ST6GALNAC5 Gene

UniProtKB/Swiss-Prot Q9BVH7-SIA7E_HUMAN

  • Pathway: Protein modification; protein glycosylation

Interacting Proteins for ST6GALNAC5 Gene

Gene Ontology (GO) - Biological Process for ST6GALNAC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006486 protein glycosylation --
GO:0006488 dolichol-linked oligosaccharide biosynthetic process TAS --
GO:0006688 glycosphingolipid biosynthetic process ISS --
GO:0009312 oligosaccharide biosynthetic process ISS 12668675
GO:0018279 protein N-linked glycosylation via asparagine TAS --
genes like me logo Genes that share ontologies with ST6GALNAC5: view

Transcripts for ST6GALNAC5 Gene

Unigene Clusters for ST6GALNAC5 Gene

ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ST6GALNAC5

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ST6GALNAC5 Gene

No ASD Table

Relevant External Links for ST6GALNAC5 Gene

GeneLoc Exon Structure for
ST6GALNAC5
ECgene alternative splicing isoforms for
ST6GALNAC5

Expression for ST6GALNAC5 Gene

mRNA expression in normal human tissues for ST6GALNAC5 Gene

mRNA differential expression in normal tissues according to GTEx for ST6GALNAC5 Gene

This gene is overexpressed in Brain - Hippocampus (6.1), Brain - Frontal Cortex (BA9) (5.3), Brain - Anterior cingulate cortex (BA24) (4.4), and Brain - Cortex (4.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ST6GALNAC5 Gene

SOURCE GeneReport for Unigene cluster for ST6GALNAC5 Gene Hs.303609

genes like me logo Genes that share expressions with ST6GALNAC5: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for ST6GALNAC5 Gene

Orthologs for ST6GALNAC5 Gene

This gene was present in the common ancestor of animals.

Orthologs for ST6GALNAC5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SIAT7E 36
  • 100 (a)
OneToOne
ST6GALNAC5 35
  • 99.6 (n)
  • 99.7 (a)
cow
(Bos Taurus)
Mammalia ST6GALNAC5 35
  • 92.85 (n)
  • 93.35 (a)
ST6GALNAC5 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ST6GALNAC5 35
  • 91.27 (n)
  • 92.26 (a)
ST6GALNAC5 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia St6galnac5 35
  • 89.15 (n)
  • 91.04 (a)
St6galnac5 16
St6galnac5 36
  • 91 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ST6GALNAC5 36
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ST6GALNAC5 36
  • 82 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia St6galnac5 35
  • 89.25 (n)
  • 91.04 (a)
chicken
(Gallus gallus)
Aves SIAT7E 36
  • 73 (a)
OneToOne
ST6GALNAC5 35
  • 77.51 (n)
  • 79.64 (a)
lizard
(Anolis carolinensis)
Reptilia ST6GALNAC5 36
  • 74 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia st6galnac5 35
  • 73.38 (n)
  • 76.04 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.1875 35
zebrafish
(Danio rerio)
Actinopterygii st6galnac5a 35
  • 70.11 (n)
  • 72.26 (a)
st6galnac5a 36
  • 67 (a)
OneToMany
st6galnac5b 36
  • 63 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta ST6Gal 36
  • 13 (a)
OneToMany
Species with no ortholog for ST6GALNAC5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ST6GALNAC5 Gene

ENSEMBL:
Gene Tree for ST6GALNAC5 (if available)
TreeFam:
Gene Tree for ST6GALNAC5 (if available)

Paralogs for ST6GALNAC5 Gene

Paralogs for ST6GALNAC5 Gene

Selected SIMAP similar genes for ST6GALNAC5 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ST6GALNAC5: view

Variants for ST6GALNAC5 Gene

Sequence variations from dbSNP and Humsavar for ST6GALNAC5 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs187956 -- 77,042,967(+) AAGGC(A/G)AGGGA intron-variant
rs199662 -- 77,066,868(+) TTTGG(C/T)GCTGT utr-variant-3-prime
rs199663 -- 77,066,917(+) CTGGG(A/G)AACAG utr-variant-3-prime
rs199664 -- 77,067,212(+) AAGGT(A/T)CTTTG utr-variant-3-prime
rs199667 -- 77,014,760(+) TCTGG(G/T)ACTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ST6GALNAC5 Gene

Variant ID Type Subtype PubMed ID
nsv1510 CNV Insertion 18451855
nsv820187 CNV Gain 19587683
esv2667776 CNV Deletion 23128226
nsv871501 CNV Loss 21882294
esv2676599 CNV Deletion 23128226
esv2750141 CNV Deletion 23290073
nsv830292 CNV Loss 17160897
esv2663416 CNV Deletion 23128226
esv259552 OTHER Complex 20981092
esv259864 OTHER Complex 20981092

Relevant External Links for ST6GALNAC5 Gene

HapMap Linkage Disequilibrium report
ST6GALNAC5
Human Gene Mutation Database (HGMD)
ST6GALNAC5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ST6GALNAC5 Gene

Disorders for ST6GALNAC5 Gene

Relevant External Links for ST6GALNAC5

Genetic Association Database (GAD)
ST6GALNAC5
Human Genome Epidemiology (HuGE) Navigator
ST6GALNAC5
genes like me logo Genes that share disorders with ST6GALNAC5: view

No data available for UniProtKB/Swiss-Prot for ST6GALNAC5 Gene

Publications for ST6GALNAC5 Gene

  1. Synthesis of disialyl Lewis a (Le(a)) structure in colon cancer cell lines by a sialyltransferase, ST6GalNAc VI, responsible for the synthesis of alpha-series gangliosides. (PMID: 12668675) Tsuchida A. … Furukawa K. (J. Biol. Chem. 2003) 3 23
  2. Molecular cloning of brain-specific GD1alpha synthase (ST6GalNAc V) containing CAG/Glutamine repeats. (PMID: 10521438) Okajima T. … Furukawa K. (J. Biol. Chem. 1999) 2 3
  3. A novel glycosyltransferase with a polyglutamine repeat; a new candidate for GD1alpha synthase (ST6GalNAc V)(1). (PMID: 10601645) Ikehara Y. … Tatematsu M. (FEBS Lett. 1999) 2 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for ST6GALNAC5 Gene

Sources for ST6GALNAC5 Gene

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