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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

ST6GAL1 Gene

protein-coding GIFtS: 62
GCID: GC03P186648

ST6 beta-galactosamide alpha-2,6-sialyltranferase 1

(Previous name: sialyltransferase 1 (beta-galactoside alpha-2,6-sialytransferase)...)
(Previous symbol: SIAT1)

Explore 31 diseases affiliated with
ST6GAL1 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
ST6 Beta-Galactosamide Alpha-2,6-Sialyltranferase 1¹ ²		EC 2.4.99.1³ ⁸
SIAT1¹ ² ³ ⁵		Sialyltransferase 1 (Beta-Galactoside Alpha-2,6-Sialytransferase)¹
Alpha 2,6-ST 1² ³		ST6N²
ST6GalI² ³		Beta-Galactoside Alpha-2,6-Sialyltransferase 1²
B-Cell Antigen CD75² ³		CMP-N-Acetylneuraminate Beta-Galactosamide Alpha-2,6-Sialyltransferase²
CMP-N-Acetylneuraminate-Beta-Galactosamide-Alpha-2,6-Sialyltransferase 1² ³		Sialyltransferase 1 (Beta-Galactoside Alpha-2,6-Sialyltransferase)²
ST6Gal I² ³		Sialyltransferase 1³

External Ids:	HGNC: 10860¹	Entrez Gene: 6480²	Ensembl: ENSG00000073849⁷	OMIM: 109675⁵	UniProtKB: P15907³

Export aliases for ST6GAL1 gene to outside databases

Previous GC identifers: GC03P188132 GC03P184054

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ST6GAL1:

This gene encodes a member of glycosyltransferase family 29. The encoded protein is a type II membrane protein that

catalyzes the transfer of sialic acid from CMP-sialic acid to galactose-containing substrates. The protein, which is

normally found in the Golgi but can be proteolytically processed to a soluble form, is involved in the generation of

the cell-surface carbohydrate determinants and differentiation antigens HB-6, CD75, and CD76. This gene has been

incorrectly referred to as CD75. Three transcript variants encoding two different isoforms have been described.

(provided by RefSeq, Aug 2009)

UniProtKB/Swiss-Prot: SIAT1_HUMAN, P15907

Function: Transfers sialic acid from the donor of substrate CMP-sialic acid to galactose containing acceptor substrates

Gene Wiki entry for ST6GAL1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000003.11 NC_018914.1 NT_005612.16

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the ST6GAL1 gene promoter:
Max1 TBP AML1a TFIID AP-4 Pax-4a
Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 3): ST6GAL1 promoter sequence

Search SABiosciences Chromatin IP Primers for ST6GAL1

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ST6GAL1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q27-q28 Ensembl cytogenetic band: 3q27.3 HGNC cytogenetic band: 3q27-q28

ST6GAL1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ST6GAL1 gene location

GeneLoc information about chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03P186648: view genomic region (about GC identifiers)

Start:	186,648,274 bp from pter	End:	186,796,341 bp from pter
Size:	148,068 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: SIAT1_HUMAN, P15907 (See protein sequence)

Recommended Name: Beta-galactoside alpha-2,6-sialyltransferase 1

Size: 406 amino acids; 46605 Da

Subcellular location: Golgi apparatus, Golgi stack membrane; Single-pass type II membrane protein. Secreted.

Note=Membrane-bound form in trans cisternae of Golgi. Secreted into the body fluid

Secondary accessions: A8KA14 D3DNV3

Explore the universe of human proteins at neXtProt for ST6GAL1: NX_P15907

Post-translational modifications:

The soluble form derives from the membrane form by proteolytic processing¹

The HB-6, CDW75, and CD76 differentiation antigens are cell-surface carbohydrate determinants generated by this enzyme¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_P15907

2 DME Specific Peptides for ST6GAL1 (P15907)

HDAVLRFN

IQPNPPSSG

ST6GAL1 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (3 alternative transcripts):

NP_003023.1 NP_775323.1 NP_775324.1

ENSEMBL proteins:

ENSP00000169298 ENSP00000397273 ENSP00000412821 ENSP00000400547 ENSP00000399525

ENSP00000407631 ENSP00000416163 ENSP00000390793 ENSP00000388928 ENSP00000389337

ENSP00000414504 ENSP00000411518 ENSP00000388789 ENSP00000415886 ENSP00000403063

ENSP00000412221

Reactome Protein details: P15907
Human Recombinant Protein Products for ST6GAL1:

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	Novus Biologicals ST6GAL1 Proteins Novus Biologicals ST6GAL1 Lysates
	Browse Sino Biological Recombinant Proteins
	Browse ProSpec Recombinant Proteins
	Uscn Proteins for ST6GAL1

Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000139	Golgi membrane	TAS	--
GO:0005576	extracellular region	IEA	--
GO:0030173	integral to Golgi membrane	IEA	--
GO:0032580	Golgi cisterna membrane	IEA	--

ST6GAL1 for ontologies About GeneDecksing

ST6GAL1 Antibody Products:

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	ThermoFisher Antibodies for ST6GAL1

Assay Products for ST6GAL1:

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	Browse R&D Systems for biochemical assays
	GenScript Custom Assay Services for ST6GAL1
	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for ST6GAL1

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ST6GAL1 for domains About GeneDecksing

2 InterPro domains/families:

IPR001675 Glyco_trans_29

IPR012163 Sialyl_trans

Graphical View of Domain Structure for InterPro Entry P15907

ProtoNet protein and cluster: P15907

1 Blocks protein family: IPB001675 Glycosyl transferase

UniProtKB/Swiss-Prot: SIAT1_HUMAN, P15907

Similarity: Belongs to the glycosyltransferase 29 family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: SIAT1_HUMAN, P15907

Function: Transfers sialic acid from the donor of substrate CMP-sialic acid to galactose containing acceptor substrates

Catalytic activity: CMP-N-acetylneuraminate + beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosamine = CMP +

alpha-N-acetylneuraminyl-2,6-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosamine

Biophysicochemical properties: Kinetic parameters: KM=530 uM for CMP-NeuAc; Vmax=1.074 pmol/min/ug enzyme;

Enzyme Number (IUBMB): EC 2.4.99.1¹ ²

Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003835	beta-galactoside alpha-2,6-sialyltransferase activity	IEA	--
GO:0008373	sialyltransferase activity	IDA	--

ST6GAL1 for ontologies About GeneDecksing

Phenotypes:
6 MGI mutant phenotypes (inferred from 3 alleles) (MGI details for St6gal1):

cellular	digestive/alimentary	hematopoietic system	immune system	normal
other

ST6GAL1 for phenotypes About GeneDecksing

Animal Models:
Mouse knock-outs for ST6GAL1: St6gal1^tm1Jxm St6gal1^tm1Jlau

inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for ST6GAL1

miRNA Products:		OriGene 3'-UTR Clone (see all 3): ST6GAL1 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ST6GAL1
		8/30 QIAGEN miScript miRNA Assays for microRNAs that regulate ST6GAL1 (see all 30):
		hsa-miR-3130-5p hsa-miR-498 hsa-miR-3938 hsa-miR-125a-5p hsa-miR-4251 hsa-miR-1271 hsa-miR-3190 hsa-miR-3921

		SwitchGear 3'UTR luciferase reporter plasmid: ST6GAL1 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ST6GAL1 (see all 7) OriGene shRNA RFP: ST6GAL1 OriGene siRNA: ST6GAL1
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		Sirion Biotech Custom design and validation of potent shRNA sequences against ST6GAL1

Gene Editing Products:			DNA2.0 Custom Protein Engineering Service for ST6GAL1
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Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ST6GAL1 (see all 6) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ST6GAL1 (see all 4) OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector (see all 3): ST6GAL1 (NM_003032)
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In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ST6GAL1

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways About this table

See pathways by source

Super-pathway

contained gene-specific pathways

Asparagine N-linked glycosylation

	Asparagine N-linked glycosylation	1.00			Post-translational protein modification	0.44
	N-Glycan biosynthesis	0.52			Metabolism of proteins	0.15

N-glycan antennae elongation in the medial/trans-Golgi

	N-glycan antennae elongation in the medial/trans-Golgi	1.00			Transport to the Golgi and subsequent modification	0.56
	N-Glycan antennae elongation	0.75

Addition of GalNAc to the Tn antigen via an alpha-1,6 linkage forms a Core 7 glycoprotein

Termination of O-glycan biosynthesis

0.69

O-linked glycosylation of mucins

0.28

Metabolism

Metabolic pathways

0.38

Glucuronidation

Other types of O-glycan biosynthesis

0.36

Pathway sources
See GeneCards unified pathways
Show all pathways

5/8 Reactome Pathways for ST6GAL1 (see all 8)

	Asparagine N-linked glycosylation
	Termination of O-glycan biosynthesis
	N-glycan antennae elongation in the medial/trans-Golgi
	Transport to the Golgi and subsequent modification
	O-linked glycosylation of mucins

3 Kegg Pathways (Kegg details for ST6GAL1):

	N-Glycan biosynthesis
	Other types of O-glycan biosynthesis
	Metabolic pathways

UniProtKB/Swiss-Prot: SIAT1_HUMAN, P15907

Pathway: Protein modification; protein glycosylation

ST6GAL1 for pathways About GeneDecksing

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for ST6GAL1

STRING Interaction Network Preview (showing 5 interactants - click image to see 19)

5/19 Interacting proteins for ST6GAL1 (P15907³ ENSP00000169298⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 19)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
CD22	P20273³, ENSP00000085219⁴	I2D: score=1 STRING: ENSP00000085219
B4GALT1	ENSP00000369055⁴	STRING: ENSP00000369055
B4GALT2	ENSP00000349293⁴	STRING: ENSP00000349293
B4GALT3	ENSP00000320965⁴	STRING: ENSP00000320965
MUC2	ENSP00000415183⁴	STRING: ENSP00000415183

About this table

Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006464	cellular protein modification process	NAS	2408023
GO:0006486	protein glycosylation	--	--
GO:0006959	humoral immune response	TAS	7786324
GO:0016266	O-glycan processing	TAS	--
GO:0018279	protein N-linked glycosylation via asparagine	TAS	--

ST6GAL1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

ST6GAL1 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for ST6GAL1

4 HMDB Compounds for ST6GAL1 About this table

Compound	Synonyms	CAS #	PubMed Ids
(N-acetylneuraminosyl(a2-6)lactosamine)	alpha-N-acetylneuraminyl-2,6-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosamine (see all 9)	64364-50-7	--
Cytidine monophosphate	5'-CMP (see all 14)	63-37-6	--
Cytidine monophosphate N-acetylneuraminic acid	CMP-N-acetylneuraminate (see all 6)	22-12-8	--
N-Acetyllactosamine	D-galactopyranosyl (see all 8)	32181-59-2	--

10 Novoseek chemical compound relationships for ST6GAL1 gene About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
sialic acid	73.4	13	10432010 (2), 9184831 (2), 19418726 (1), 11511814 (1) (see all 7)
n-acetyllactosamine	68.3	5	16319516 (3), 14664380 (1), 9184831 (1)
ganglioside	42.2	3	17478202 (1), 16053379 (1)
polysaccharide	36.2	3	12429811 (1), 9147064 (1)
glycolipid	27.3	2	10561117 (1), 12966079 (1)
ribonucleic acid	19.4	2	12798701 (1), 11585423 (1)
galactose	8.12	2	9838208 (1), 16897185 (1)
oligonucleotide	3.22	5	17575688 (2), 17441333 (1)
carbohydrates	1.37	1	15864429 (1)
tyrosine	0	2	16782884 (1), 11559557 (1)

Search CenterWatch for drugs/clinical trials and news about ST6GAL1 / SIAT1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for ST6GAL1 gene (3 alternative transcripts):

NM_003032.2 NM_173216.2 NM_173217.2

Unigene Cluster for ST6GAL1:

ST6 beta-galactosamide alpha-2,6-sialyltranferase 1

Hs.207459 [show with all ESTs]

Unigene Representative Sequence: AK128726

18/22 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 22):

ENST00000169298(uc003frb.3) ENST00000463542 ENST00000487031 ENST00000455441

ENST00000427315 ENST00000468614 ENST00000458216 ENST00000430309 ENST00000417392

ENST00000438590 ENST00000448408 ENST00000485105 ENST00000440338 ENST00000448044(uc003frd.3)

ENST00000416235 ENST00000423451 ENST00000446170 ENST00000448449

miRNA Products:		OriGene 3'-UTR Clone (see all 3): ST6GAL1 Browse OriGene MicroRNA Expression Plasmids
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		8/30 QIAGEN miScript miRNA Assays for microRNAs that regulate ST6GAL1 (see all 30):
		hsa-miR-3130-5p hsa-miR-498 hsa-miR-3938 hsa-miR-125a-5p hsa-miR-4251 hsa-miR-1271 hsa-miR-3190 hsa-miR-3921

		SwitchGear 3'UTR luciferase reporter plasmid: ST6GAL1 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ST6GAL1 (see all 7) OriGene shRNA RFP: ST6GAL1 OriGene siRNA: ST6GAL1
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ST6GAL1
		Sirion Biotech Custom design and validation of potent shRNA sequences against ST6GAL1

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		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ST6GAL1

Additional cDNA sequence:

AF007133.1 AK128726.1 AK292879.1 AK312023.1 BC031476.1 BC040009.1 L11720.1 U67847.1

U67849.1 X17247.1 X54363.1 X62822.1

24/27 DOTS entries (see all 27):

DT.91751675 DT.100824958 DT.100723454 DT.95237166 DT.120840379 DT.95224058 DT.120840374 DT.434773

DT.91751673 DT.218310 DT.101980912 DT.120840315 DT.120840381 DT.120840396 DT.40213741 DT.91751669

DT.91751667 DT.92465385 DT.95120107 DT.95237150 DT.100824952 DT.101964761 DT.120840311 DT.120840393

24/411 AceView cDNA sequences (see all 411):

AV650337 AI094994 AI678203 BC031476 BQ651134 BG567341 AK128726 BM716205

AI276413 AA931708 AW849346 AW575698 AW294780 BU622722 AA740663 AW575779

AA362158 BQ448699 AA017439 CB241705 AW849661 AA804742 BC040009 CA310851

GeneLoc Exon Structure

5/16 Alternative Splicing Database (ASD) splice patterns (SP) for ST6GAL1 (see all 16) About this scheme

ExUns:	1a	·	1b	·	1c	·	1d	^	2	^	3	^	4	^	5a	·	5b	·	5c	^	6	^	7a	·	7b	^	8	^	9a	·	9b	^	10	^	11	^	12a	·	12b	^	13a	·	13b	·	13c	^	14a	·	14b	^	15	^
SP1:									-		-		-						-		-		-		-		-		-		-		-		-
SP2:																																	-		-
SP3:
SP4:									-		-		-						-		-		-		-		-		-		-		-		-		-		-		-		-		-		-		-
SP5:									-		-		-		-		-		-		-		-		-		-		-		-		-		-		-		-		-		-		-		-		-

ExUns:	16	^	17a	·	17b	·	17c	·	17d	^	18a	·	18b	·	18c	^	19a	·	19b
SP1:	-		-								-
SP2:	-		-								-
SP3:			-
SP4:	-		-
SP5:	-		-								-

ECgene alternative splicing isoforms for ST6GAL1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ST6GAL1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GGACCCTCTC

About this image

ST6GAL1 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 7 LifeMap Cells

Name

Category

PureStem™ endothelial progenitor 30-MV2-12 (Embryonic Progenitor Cell)

Blood, Endothelium

PureStem™ endothelial Progenitor 30-SM2-3 (Embryonic Progenitor Cell)

Blood, Endothelium

PureStem™ endothelial progenitor 30-SM2-1 (Embryonic Progenitor Cell)

Endothelium

PureStem™ endothelial progenitor 30-MV2-14 (Embryonic Progenitor Cell)

Endothelium

PureStem™ progenitor EN13 (Embryonic Progenitor Cell)

PureStem™ progenitor EN27 (Embryonic Progenitor Cell)

PureStem™ progenitor EN7 (Embryonic Progenitor Cell)

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See ST6GAL1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ST6GAL1

SOURCE GeneReport for Unigene cluster: Hs.207459

SABiosciences Expression via Pathway-Focused PCR Arrays including ST6GAL1:

Cell Surface Markers in human mouse rat

Glycosylation in human mouse rat

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for ST6GAL1 gene from 4/12 species (see all 12) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	ST6GAL1¹	ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	64.1(n) 62.78(a)		396169 NM_205241.1 NP_990572.1
lizard (Anolis carolinensis)	Reptilia	ST6GAL1⁶	--	54(a)	1 ↔ 1	3(28595301-28614467)
zebrafish (Danio rerio)	Actinopterygii	CA471333.1²	--	73.63(n)		CA471333.1
fruit fly (Drosophila melanogaster)	Insecta	ST6Gal⁶	Sialyltransferase	23(a)	1 → many	2R(20578945-20581909)

ENSEMBL Gene Tree for ST6GAL1 (if available)
TreeFam Gene Tree for ST6GAL1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for ST6GAL1 gene

ST6GALNAC3² ST6GAL2² ST6GALNAC5² ST6GALNAC4² ST6GALNAC6²

1 SIMAP similar gene for ST6GAL1 using alignment to 16 protein entries: SIAT1_HUMAN (see all proteins):

ST6GAL2

ST6GAL1 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
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SNP ID	Valid	Clinical significance	Chr 3 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs61750882^1,2		--	184053066(+)	`TCCCCA/CGCGGA`	1	--	us2k¹		2		NS NA	198
rs9824989^1,2	C	--	184054004(+)	`GTGGCG/TCATTC`	1	--	us2k¹		0	--	--	--	--
rs113832633^1,2	C	--	184054084(+)	`GGGTCT/CAAGGG`	1	--	us2k¹		2		CSA WA	120
rs78264046^1,2	C,F	--	184054477(+)	`GCAGCG/AGGGAG`	1	--	us2k¹		1		EA	120
rs11332772^1,2	C,F	--	184054645(+)	`TCCCCG/-GGGGG`	1	--	us2k¹ trp³		3		NA CSA	6
rs79915747^1,2		--	184054645(+)	`TCCCCC/GGGGGG`	1	--	us2k¹		1		CSA	1
rs200484422^1,2	C	--	184054652(-)	`CAGTTC/TCCCCC`	1	--	us2k¹		0	--	--	--	--
rs11293711^1,2	C	--	184055264(+)	`GTTAC-/TTTTTT`	1	--	nc-transcript-varianttrp³		2		NA CSA	4
rs36118972^1,2	C	--	186646335(+)	`TTCCAC/TATGGC`	2	--	us2k¹		1		NA	2
rs114788733^1,2	C	--	186646410(+)	`ATGGCG/AGCAGG`	2	--	us2k¹		1		NA	120

HapMap Linkage Disequilibrium report for ST6GAL1 (186648274 - 186796341 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 4 variations for ST6GAL1
3 CNVs: 47856 51030 3468
1 Indel: 46348

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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ST6GAL1 for disorders           About GeneDecksing

OMIM gene information: 109675    OMIM disorders: --

20/31 diseases for ST6GAL1 (see all 31):    About MalaCards

bile duct carcinoma cervical intraepithelial neoplasia cervical squamous cell carcinoma squamous cell carcinoma

cervicitis colon adenocarcinoma cervical carcinoma graves' disease

hepatocellular carcinoma carcinoma colon cancer influenza

colorectal cancer breast cancer noma acute leukemia

sinusitis colon carcinoma adenocarcinoma ovarian cancer

10/13 Novoseek disease relationships for ST6GAL1 gene (see all 13) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
colon adenocarcinoma	49.4	3	15930282 (2), 19014651 (1)
colon cancer	34.7	10	9184831 (2), 11406350 (2), 19483716 (1), 7794269 (1) (see all 6)
cervical carcinoma	27.5	5	17441333 (1), 17575688 (1)
metastasis	15.3	3	15930282 (1), 16166423 (1), 19014651 (1)
carcinoma	15.1	6	17355919 (1), 11585423 (1)
tumors	6.03	27	16319516 (3), 16425369 (3), 19014651 (3), 12931020 (2) (see all 10)
influenza	0.333	4	16081961 (2), 12857911 (2)
carcinoma squamous cell	0	4	11585423 (2), 12798701 (1)
cervical cancer	0	2	17575688 (1), 11585423 (1)
breast cancer	0	2	12841680 (1), 9751611 (1)

Human Genome Epidemiology (HuGE) Navigator: ST6GAL1 (2 documents)

Export disorders for ST6GAL1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for ST6GAL1 gene, integrated from 9 sources (see all 140):
(articles sorted by number of sources associating them with ST6GAL1)

Utopia: connect your pdf to the dynamic
world of online information

Complete cDNA sequence encoding human beta-galactoside alpha-2,6- sialyltransferase. (PubMed id 2408023)^{1, 2, 3} Grundmann U.G.... Zettlmeissl G. (1990)
The B cell antigen CD75 is a cell surface sialytransferase. (PubMed id 2373995)^{1, 2, 9} Stamenkovic I.... Funderud S. (1990)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
The HB-6, CDw75, and CD76 differentiation antigens are unique cell- surface carbohydrate determinants generated by the beta-galactoside alpha 2,6-sialyltransferase. (PubMed id 1730763)^{1, 2} Bast B.J.E.G.... Tedder T.F. (1992)
Isolation and characterization of a partial cDNA for a human sialyltransferase. (PubMed id 2803295)^{1, 2} Lance P.... Lau J.T.Y. (1989)
Molecular insights into beta-galactoside alpha2,6-sialyltransferase secretion in vivo. (PubMed id 19150807)^{1, 9} Kitazume S....Hashimoto Y. (2009)
Elevation of ST6Gal I activity in malignant and transitional tissue in human colorectal cancer. (PubMed id 16319516)^{1, 9} Vazquez-Martin C....Fernandez-Briera A. (2005)
Liver Galbeta1,4GlcNAc alpha2,6-sialyltransferase is down-regulated in human alcoholics: possible cause for the appearance of asialoconjugates. (PubMed id 17697868)^{1, 9} Gong M....Lakshman M.R. (2007)
Proteolytic shedding of ST6Gal-I by BACE1 regulates the glycosylation and function of alpha4beta1 integrins. (PubMed id 18650447)^{1, 9} Woodard-Grice A.V....Bellis S.L. (2008)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 6480	HGNC: 10860	AceView: SIAT1	Ensembl:ENSG00000073849	euGenes: HUgn6480
ECgene: ST6GAL1	Kegg: 6480	H-InvDB: ST6GAL1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for ST6GAL1	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for ST6GAL1	Genetics and Cytogenetics in Oncology and Haematology
GGDB	http://riodb.ibase.aist.go.jp/rcmg/ggdb/Homolog?cat=symbol&symbol=ST6GAL1
Functional Glycomics Gateway - GTase	http://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/viewGlycoEnzyme.jsp?gbpId=gt_hum_628

Intellectual Property for ST6GAL1 gene
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Patent Information for ST6GAL1 gene:
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ST6GAL1 Gene

ST6 beta-galactosamide alpha-2,6-sialyltranferase 1

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ST6GAL1 Gene

ST6 beta-galactosamide alpha-2,6-sialyltranferase 1

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