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Aliases for ST3GAL6-AS1 Gene

Subcategory (RNA class) for ST3GAL6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ST3GAL6-AS1 Gene

  • ST3GAL6 Antisense RNA 1 2 3 5
  • ST3GAL6 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ST3GAL6-AS1 Gene

Previous GeneCards Identifiers for ST3GAL6-AS1 Gene

  • GC00U932986
  • GC03M098434

Summaries for ST3GAL6-AS1 Gene

GeneCards Summary for ST3GAL6-AS1 Gene

ST3GAL6-AS1 (ST3GAL6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST3GAL6-AS1 Gene

Genomics for ST3GAL6-AS1 Gene

Regulatory Elements for ST3GAL6-AS1 Gene

Enhancers for ST3GAL6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G098760 1.1 Ensembl ENCODE dbSUPER 30.4 -29.1 -29115 1.7 BHLHE40 DPF2 GABPA ZNF121 SMARCA4 ETV6 CREM SPI1 ST3GAL6-AS1 ST3GAL6 CPOX GC03P098755 PDLIM1P4
GH03G098782 1.8 FANTOM5 Ensembl ENCODE dbSUPER 16.8 -52.2 -52201 4.9 FOXA2 MLX ARID4B YY1 FOS SP5 JUNB PPARG KAT8 MIER3 ST3GAL6 DCBLD2 ST3GAL6-AS1 CPOX OR5K4 PDLIM1P4 RNU6-26P GC03M098805
GH03G098708 0.7 ENCODE 39.3 +23.1 23055 1.5 PKNOX1 L3MBTL2 ARNT HLF CEBPG FEZF1 ZNF384 REST ZNF843 CTBP1 ST3GAL6-AS1 ST3GAL6 CPOX GC03P098705 GC03M098711
GH03G098776 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.6 -46.0 -46018 4.7 FOXA2 ATF1 MLX ARID4B DMAP1 YY1 GATA2 FOS SP5 ZHX2 ST3GAL6 DCBLD2 ST3GAL6-AS1 CPOX PDLIM1P4 GC03P098755
GH03G098731 1.3 ENCODE dbSUPER 17.2 -0.4 -404 3.1 HDGF FOXA2 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF263 SP3 SP5 ST3GAL6-AS1 OR5K2 ST3GAL6 GC03P098755
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ST3GAL6-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ST3GAL6-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000155363 -549 2801 HDGF FOXA2 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF263 SP3 SP5

Genomic Location for ST3GAL6-AS1 Gene

Chromosome:
3
Start:
98,714,330 bp from pter
End:
98,732,651 bp from pter
Size:
18,322 bases
Orientation:
Minus strand

Genomic View for ST3GAL6-AS1 Gene

Genes around ST3GAL6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST3GAL6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST3GAL6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST3GAL6-AS1 Gene

Proteins for ST3GAL6-AS1 Gene

Post-translational modifications for ST3GAL6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ST3GAL6-AS1 Gene

Domains & Families for ST3GAL6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ST3GAL6-AS1 Gene

Function for ST3GAL6-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ST3GAL6-AS1 Gene

Localization for ST3GAL6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ST3GAL6-AS1 Gene

Pathways & Interactions for ST3GAL6-AS1 Gene

SuperPathways for ST3GAL6-AS1 Gene

No Data Available

Interacting Proteins for ST3GAL6-AS1 Gene

Gene Ontology (GO) - Biological Process for ST3GAL6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ST3GAL6-AS1 Gene

Drugs & Compounds for ST3GAL6-AS1 Gene

No Compound Related Data Available

Transcripts for ST3GAL6-AS1 Gene

mRNA/cDNA for ST3GAL6-AS1 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ST3GAL6-AS1 Gene

ST3GAL6 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ST3GAL6-AS1 Gene

No ASD Table

Relevant External Links for ST3GAL6-AS1 Gene

GeneLoc Exon Structure for
ST3GAL6-AS1
ECgene alternative splicing isoforms for
ST3GAL6-AS1

Expression for ST3GAL6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ST3GAL6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ST3GAL6-AS1 Gene

This gene is overexpressed in Heart - Left Ventricle (x4.8).

SOURCE GeneReport for Unigene cluster for ST3GAL6-AS1 Gene:

Hs.633553
genes like me logo Genes that share expression patterns with ST3GAL6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ST3GAL6-AS1 Gene

Orthologs for ST3GAL6-AS1 Gene

Evolution for ST3GAL6-AS1 Gene

ENSEMBL:
Gene Tree for ST3GAL6-AS1 (if available)
TreeFam:
Gene Tree for ST3GAL6-AS1 (if available)

No data available for Orthologs for ST3GAL6-AS1 Gene

Paralogs for ST3GAL6-AS1 Gene

No data available for Paralogs for ST3GAL6-AS1 Gene

Variants for ST3GAL6-AS1 Gene

Sequence variations from dbSNP and Humsavar for ST3GAL6-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000049376 -- 98,730,772(+) CAGGT(C/T)AGCAG intron-variant, upstream-variant-2KB
rs1000103923 -- 98,731,867(+) CAGTT(C/T)GTGAC intron-variant, upstream-variant-2KB
rs1000106788 -- 98,724,282(+) TGCGC(A/G)CCTGT intron-variant
rs1000117681 -- 98,732,317(+) GCCGG(A/G)CGGGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000169846 -- 98,733,150(+) TGCCC(C/T)TCCAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ST3GAL6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv995202 CNV insertion 20482838
nsv470783 CNV loss 18288195
nsv473472 CNV novel sequence insertion 20440878
nsv478405 CNV novel sequence insertion 20440878
nsv478952 CNV novel sequence insertion 20440878
nsv524042 CNV gain 19592680
nsv524353 CNV loss 19592680
nsv591065 CNV gain 21841781

Relevant External Links for ST3GAL6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ST3GAL6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ST3GAL6-AS1 Gene

Disorders for ST3GAL6-AS1 Gene

Relevant External Links for ST3GAL6-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ST3GAL6-AS1

No disorders were found for ST3GAL6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ST3GAL6-AS1 Gene

Publications for ST3GAL6-AS1 Gene

No publications were found for ST3GAL6-AS1 Gene.

Products for ST3GAL6-AS1 Gene

Sources for ST3GAL6-AS1 Gene

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