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Aliases for ST3GAL6-AS1 Gene

Subcategory (RNA class) for ST3GAL6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ST3GAL6-AS1 Gene

  • ST3GAL6 Antisense RNA 1 2 3 5
  • ST3GAL6 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ST3GAL6-AS1 Gene

Previous GeneCards Identifiers for ST3GAL6-AS1 Gene

  • GC00U932986
  • GC03M098434

Summaries for ST3GAL6-AS1 Gene

GeneCards Summary for ST3GAL6-AS1 Gene

ST3GAL6-AS1 (ST3GAL6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST3GAL6-AS1 Gene

Genomics for ST3GAL6-AS1 Gene

Regulatory Elements for ST3GAL6-AS1 Gene

Enhancers for ST3GAL6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F098708 0.9 Ensembl ENCODE 39.3 +22.9 22939 1.8 PKNOX1 L3MBTL2 HLF ZNF384 CEBPG FEZF1 REST ZNF843 CTBP1 ZNF692 ST3GAL6-AS1 ST3GAL6 CPOX GC03P098705 GC03M098711
GH03F098782 1.6 FANTOM5 Ensembl ENCODE 16.8 -52.2 -52201 4.9 MLX ARID4B THRB RAD21 RARA YY1 SCRT2 FOS MIXL1 THAP11 ST3GAL6 DCBLD2 ST3GAL6-AS1 CPOX OR5K4 PDLIM1P4 RNU6-26P GC03M098805
GH03F098776 1.6 FANTOM5 Ensembl ENCODE 12.5 -46.0 -46018 4.7 ELF3 ATF1 MLX ARID4B DMAP1 ZSCAN9 RAD21 RARA YY1 CREM ST3GAL6 DCBLD2 ST3GAL6-AS1 CPOX PDLIM1P4 GC03P098755
GH03F098731 1 ENCODE 17.2 -0.4 -404 3.1 SIN3A ARID4B DMAP1 ZNF48 YY1 ZNF263 SP3 SP5 MXD4 REST ST3GAL6-AS1 OR5K2 ST3GAL6 GC03P098755
GH03F098592 1.1 ENCODE 12.9 +139.2 139173 2.6 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A YBX1 ST3GAL6-AS1 CPOX GC03M098547
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ST3GAL6-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ST3GAL6-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001369034 -649 3001 SIN3A ARID4B DMAP1 ZNF48 ZNF263 SP3 SP5 MXD4 REST TBX21

Genomic Location for ST3GAL6-AS1 Gene

Chromosome:
3
Start:
98,714,330 bp from pter
End:
98,732,651 bp from pter
Size:
18,322 bases
Orientation:
Minus strand

Genomic View for ST3GAL6-AS1 Gene

Genes around ST3GAL6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST3GAL6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST3GAL6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST3GAL6-AS1 Gene

Proteins for ST3GAL6-AS1 Gene

Post-translational modifications for ST3GAL6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ST3GAL6-AS1 Gene

Domains & Families for ST3GAL6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ST3GAL6-AS1 Gene

Function for ST3GAL6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ST3GAL6-AS1 Gene

Localization for ST3GAL6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ST3GAL6-AS1 Gene

Pathways & Interactions for ST3GAL6-AS1 Gene

SuperPathways for ST3GAL6-AS1 Gene

No Data Available

Interacting Proteins for ST3GAL6-AS1 Gene

Gene Ontology (GO) - Biological Process for ST3GAL6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ST3GAL6-AS1 Gene

Transcripts for ST3GAL6-AS1 Gene

mRNA/cDNA for ST3GAL6-AS1 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ST3GAL6-AS1 Gene

ST3GAL6 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ST3GAL6-AS1 Gene

No ASD Table

Relevant External Links for ST3GAL6-AS1 Gene

GeneLoc Exon Structure for
ST3GAL6-AS1
ECgene alternative splicing isoforms for
ST3GAL6-AS1

Expression for ST3GAL6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ST3GAL6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ST3GAL6-AS1 Gene

This gene is overexpressed in Heart - Left Ventricle (x4.8).

SOURCE GeneReport for Unigene cluster for ST3GAL6-AS1 Gene:

Hs.633553
genes like me logo Genes that share expression patterns with ST3GAL6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ST3GAL6-AS1 Gene

Orthologs for ST3GAL6-AS1 Gene

Evolution for ST3GAL6-AS1 Gene

ENSEMBL:
Gene Tree for ST3GAL6-AS1 (if available)
TreeFam:
Gene Tree for ST3GAL6-AS1 (if available)

No data available for Orthologs for ST3GAL6-AS1 Gene

Paralogs for ST3GAL6-AS1 Gene

No data available for Paralogs for ST3GAL6-AS1 Gene

Variants for ST3GAL6-AS1 Gene

Sequence variations from dbSNP and Humsavar for ST3GAL6-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10546770 -- 98,731,038(+) AGATA(-/GACA)AATTC intron-variant, upstream-variant-2KB
rs111437204 -- 98,729,973(+) AAAAA(-/G)CAAAC intron-variant
rs111559408 -- 98,721,947(+) TACTT(C/T)GTGAA intron-variant
rs111587649 -- 98,729,833(+) TATTC(C/T)AGACT intron-variant
rs111884611 -- 98,718,116(+) TCTCC(C/T)ACCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ST3GAL6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv995202 CNV insertion 20482838
nsv470783 CNV loss 18288195
nsv473472 CNV novel sequence insertion 20440878
nsv478405 CNV novel sequence insertion 20440878
nsv478952 CNV novel sequence insertion 20440878
nsv524042 CNV gain 19592680
nsv524353 CNV loss 19592680
nsv591065 CNV gain 21841781

Relevant External Links for ST3GAL6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ST3GAL6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ST3GAL6-AS1 Gene

Disorders for ST3GAL6-AS1 Gene

Relevant External Links for ST3GAL6-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ST3GAL6-AS1

No disorders were found for ST3GAL6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ST3GAL6-AS1 Gene

Publications for ST3GAL6-AS1 Gene

No publications were found for ST3GAL6-AS1 Gene.

Products for ST3GAL6-AS1 Gene

Sources for ST3GAL6-AS1 Gene

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