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Aliases for ST3GAL1 Gene

Aliases for ST3GAL1 Gene

  • ST3 Beta-Galactoside Alpha-2,3-Sialyltransferase 1 2 3 5
  • Sialyltransferase 4A (Beta-Galactosidase Alpha-2,3-Sialytransferase) 2 3
  • Gal-Beta-1,3-GalNAc-Alpha-2,3-Sialyltransferase 3 4
  • Beta-Galactoside Alpha-2,3-Sialyltransferase 1 3 4
  • Alpha 2,3-ST 1 3 4
  • EC 2.4.99.4 4 61
  • Gal-NAc6S 3 4
  • ST3GalA.1 3 4
  • ST3Gal I 2 4
  • SIAT4-A 3 4
  • ST3GalI 3 4
  • SIAT4A 3 4
  • SIATFL 3 4
  • ST3O 3 4
  • CMP-N-Acetylneuraminate-Beta-Galactosamide-Alpha-2,3-Sialyltransferase 1 3
  • Sialyltransferase 4A (Beta-Galactoside Alpha-2,3-Sialyltransferase) 3
  • Sialyltransferase 4A (Beta-Galactoside Alpha-2,3-Sialytransferase) 3
  • Sialyltransferase 4A 4
  • ST3GalIA,1 3
  • EC 2.4.99 61
  • ST3GalIA 3
  • ST3GalA 3
  • SIAT4 4

External Ids for ST3GAL1 Gene

Previous HGNC Symbols for ST3GAL1 Gene

  • SIAT4A

Previous GeneCards Identifiers for ST3GAL1 Gene

  • GC08M134541
  • GC08M129786
  • GC08M134468

Summaries for ST3GAL1 Gene

Entrez Gene Summary for ST3GAL1 Gene

  • The protein encoded by this gene is a type II membrane protein that catalyzes the transfer of sialic acid from CMP-sialic acid to galactose-containing substrates. The encoded protein is normally found in the Golgi but can be proteolytically processed to a soluble form. Correct glycosylation of the encoded protein may be critical to its sialyltransferase activity. This protein, which is a member of glycosyltransferase family 29, can use the same acceptor substrates as does sialyltransferase 4B. Two transcript variants encoding the same protein have been found for this gene. Other transcript variants may exist, but have not been fully characterized yet. [provided by RefSeq, Jul 2008]

GeneCards Summary for ST3GAL1 Gene

ST3GAL1 (ST3 Beta-Galactoside Alpha-2,3-Sialyltransferase 1) is a Protein Coding gene. Diseases associated with ST3GAL1 include Colorectal Cancer. Among its related pathways are Keratan sulfate/keratin metabolism and Synthesis of substrates in N-glycan biosythesis. GO annotations related to this gene include sialyltransferase activity and beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. An important paralog of this gene is ST3GAL2.

UniProtKB/Swiss-Prot for ST3GAL1 Gene

  • It may be responsible for the synthesis of the sequence NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc- found on sugar chains O-linked to Thr or Ser and also as a terminal sequence on certain gangliosides. SIAT4A and SIAT4B sialylate the same acceptor substrates but exhibit different Km values.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST3GAL1 Gene

Genomics for ST3GAL1 Gene

Regulatory Elements for ST3GAL1 Gene

Enhancers for ST3GAL1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G133516 1.8 FANTOM5 Ensembl ENCODE dbSUPER 22.2 +49.9 49915 13.0 HDGF PKNOX1 FOXA2 ARID4B YY1 CBX5 GATA2 FOS MXD4 JUNB ST3GAL1 SLA ENSG00000283197 GC08P133555
GH08G133495 1.9 FANTOM5 Ensembl ENCODE dbSUPER 20 +71.2 71230 10.6 HDGF PKNOX1 ZFP64 WRNIP1 SIN3A TCF12 GATA2 ELK1 ZNF143 ZNF207 ST3GAL1 SLA GC08P133508 GC08M133455
GH08G133896 1.6 FANTOM5 Ensembl ENCODE dbSUPER 17.7 -326.0 -325954 3.6 PKNOX1 MTA2 EBF1 TBX21 EP300 FOXA1 POLR2A IKZF1 ZNF26 HNF4G ST3GAL1 LOC101927822 GC08M133942
GH08G133538 1.9 FANTOM5 Ensembl ENCODE dbSUPER 13.9 +32.8 32790 2.1 PKNOX1 CREB3L1 ARNT YY1 ZNF766 FOS JUNB REST TBX21 ZNF592 ST3GAL1 GC08P133555 ENSG00000283197
GH08G133455 1.4 Ensembl ENCODE dbSUPER 16.1 +115.6 115628 2.5 ELF3 PKNOX1 FOXA2 ARID4B RAD21 GATA2 ZNF143 FOS THAP11 ZNF654 ST3GAL1 WISP1 GC08M133455 ST13P6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ST3GAL1 on UCSC Golden Path with GeneCards custom track

Promoters for ST3GAL1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000231350 954 3401 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 ZNF143

Genomic Location for ST3GAL1 Gene

Chromosome:
8
Start:
133,454,848 bp from pter
End:
133,572,454 bp from pter
Size:
117,607 bases
Orientation:
Minus strand

Genomic View for ST3GAL1 Gene

Genes around ST3GAL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST3GAL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST3GAL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST3GAL1 Gene

Proteins for ST3GAL1 Gene

  • Protein details for ST3GAL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q11201-SIA4A_HUMAN
    Recommended name:
    CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1
    Protein Accession:
    Q11201
    Secondary Accessions:
    • O60677
    • Q9UN51

    Protein attributes for ST3GAL1 Gene

    Size:
    340 amino acids
    Molecular mass:
    39075 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ST3GAL1 Gene

Selected DME Specific Peptides for ST3GAL1 Gene

Q11201:
  • CRRCAVVGNSGNL
  • WHHYWENN
  • GFEADVG
  • FRKTGVHDADFE
  • IDSHDFVLRMN
  • HGRYPSTG
  • LFIFLTSF
  • VYPESFREL
  • YGFGADS

Post-translational modifications for ST3GAL1 Gene

  • The soluble form derives from the membrane form by proteolytic processing.
  • Glycosylation at Asn79, Asn114, isoforms=201, and Asn323
  • Modification sites at PhosphoSitePlus

Domains & Families for ST3GAL1 Gene

Gene Families for ST3GAL1 Gene

Protein Domains for ST3GAL1 Gene

Suggested Antigen Peptide Sequences for ST3GAL1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q11201

UniProtKB/Swiss-Prot:

SIA4A_HUMAN :
  • Belongs to the glycosyltransferase 29 family.
Family:
  • Belongs to the glycosyltransferase 29 family.
genes like me logo Genes that share domains with ST3GAL1: view

Function for ST3GAL1 Gene

Molecular function for ST3GAL1 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
CMP-N-acetylneuraminate + beta-D-galactosyl-1,3-N-acetyl-alpha-D-galactosaminyl-R = CMP + alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1,3-N-acetyl-alpha-D-galactosaminyl-R.
UniProtKB/Swiss-Prot Function:
It may be responsible for the synthesis of the sequence NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc- found on sugar chains O-linked to Thr or Ser and also as a terminal sequence on certain gangliosides. SIAT4A and SIAT4B sialylate the same acceptor substrates but exhibit different Km values.

Enzyme Numbers (IUBMB) for ST3GAL1 Gene

Gene Ontology (GO) - Molecular Function for ST3GAL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity TAS,IDA --
GO:0008373 sialyltransferase activity IEA --
GO:0016740 transferase activity IEA --
GO:0016757 transferase activity, transferring glycosyl groups IEA --
genes like me logo Genes that share ontologies with ST3GAL1: view
genes like me logo Genes that share phenotypes with ST3GAL1: view

Animal Models for ST3GAL1 Gene

MGI Knock Outs for ST3GAL1:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ST3GAL1 Gene

Localization for ST3GAL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ST3GAL1 Gene

Golgi apparatus, Golgi stack membrane; Single-pass type II membrane protein. Secreted. Note=Membrane-bound form in trans cisternae of Golgi. Secreted into the body fluid.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ST3GAL1 gene
Compartment Confidence
extracellular 5
golgi apparatus 5
nucleus 1
endoplasmic reticulum 1
lysosome 1

Gene Ontology (GO) - Cellular Components for ST3GAL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane TAS --
GO:0005576 extracellular region IEA --
GO:0005794 Golgi apparatus IEA --
GO:0016020 membrane IDA 19946888
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with ST3GAL1: view

Pathways & Interactions for ST3GAL1 Gene

genes like me logo Genes that share pathways with ST3GAL1: view

UniProtKB/Swiss-Prot Q11201-SIA4A_HUMAN

  • Pathway: Protein modification; protein glycosylation.

Interacting Proteins for ST3GAL1 Gene

Selected Interacting proteins: Q11201-SIA4A_HUMAN for ST3GAL1 Gene via IID

Gene Ontology (GO) - Biological Process for ST3GAL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006054 N-acetylneuraminate metabolic process ISS --
GO:0006464 cellular protein modification process TAS 10504389
GO:0006468 protein phosphorylation IEA --
GO:0006486 protein glycosylation IEA --
GO:0006487 protein N-linked glycosylation ISS --
genes like me logo Genes that share ontologies with ST3GAL1: view

No data available for SIGNOR curated interactions for ST3GAL1 Gene

Drugs & Compounds for ST3GAL1 Gene

(2) Drugs for ST3GAL1 Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Cytidine monophosphate Experimental Pharma 0

(9) Additional Compounds for ST3GAL1 Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Cytidine monophosphate N-acetylneuraminic acid
  • CMP-N-Acetylneuraminate
  • CMP-N-Acylneuraminate
  • CMP-NeuNAc
  • Cytidine 5'-monophosphate N-acetylneuraminic acid
  • Cytidine Monophosphate N-Acetylneuraminate
22-12-8
Ganglioside GM1 (18:1/12:0)
  • 1-O-[O-(N-Acetyl-a-neuraminosyl)-(2)-O-[O-b-D-galactopyranosyl-(1)-2-(acetylamino)-2-deoxy-b-D-galactopyranosyl-(1)]-O-b-D-galactopyranosyl-(1)-b-D-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-a-neuraminosyl)-(2->3)-O-[O-b-D galactopyranosyl-(1->3)-2-(acetylamino)-2-deoxy-b-D-galactopyranosyl-(1->4)]-O-b-D-galactopyranosyl-(1->4)-b-D-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-alpha-neuraminosyl)-(2)-O-[O-beta-delta-galactopyranosyl-(1)-2-(acetylamino)-2-deoxy-beta-delta-galactopyranosyl-(1)]-O-beta-delta-galactopyranosyl-(1)-beta-delta-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-alpha-neuraminosyl)-(2->3)-O-[O-beta-D galactopyranosyl-(1->3)-2-(acetylamino)-2-deoxy-beta-delta-galactopyranosyl-(1->4)]-O-beta-delta-galactopyranosyl-(1->4)-beta-delta-glucopyranosyl]-Ceramide
  • D-Galactosyl-1,3-beta-N-acetyl-D galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosyl-Nacylsphingosine
104443-62-1
Ganglioside GM1 (18:1/16:0)
  • 1-O-[O-(N-Acetyl-a-neuraminosyl)-(2)-O-[O-b-D-galactopyranosyl-(1)-2-(acetylamino)-2-deoxy-b-D-galactopyranosyl-(1)]-O-b-D-galactopyranosyl-(1)-b-D-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-a-neuraminosyl)-(2->3)-O-[O-b-D galactopyranosyl-(1->3)-2-(acetylamino)-2-deoxy-b-D-galactopyranosyl-(1->4)]-O-b-D-galactopyranosyl-(1->4)-b-D-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-alpha-neuraminosyl)-(2)-O-[O-beta-delta-galactopyranosyl-(1)-2-(acetylamino)-2-deoxy-beta-delta-galactopyranosyl-(1)]-O-beta-delta-galactopyranosyl-(1)-beta-delta-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-alpha-neuraminosyl)-(2->3)-O-[O-beta-D galactopyranosyl-(1->3)-2-(acetylamino)-2-deoxy-beta-delta-galactopyranosyl-(1->4)]-O-beta-delta-galactopyranosyl-(1->4)-beta-delta-glucopyranosyl]-Ceramide
  • D-Galactosyl-1,3-beta-N-acetyl-D galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosyl-Nacylsphingosine
104443-62-1
Ganglioside GM1 (18:1/20:0)
  • 1-O-[O-(N-Acetyl-a-neuraminosyl)-(2)-O-[O-b-D-galactopyranosyl-(1)-2-(acetylamino)-2-deoxy-b-D-galactopyranosyl-(1)]-O-b-D-galactopyranosyl-(1)-b-D-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-a-neuraminosyl)-(2->3)-O-[O-b-D galactopyranosyl-(1->3)-2-(acetylamino)-2-deoxy-b-D-galactopyranosyl-(1->4)]-O-b-D-galactopyranosyl-(1->4)-b-D-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-alpha-neuraminosyl)-(2)-O-[O-beta-delta-galactopyranosyl-(1)-2-(acetylamino)-2-deoxy-beta-delta-galactopyranosyl-(1)]-O-beta-delta-galactopyranosyl-(1)-beta-delta-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-alpha-neuraminosyl)-(2->3)-O-[O-beta-D galactopyranosyl-(1->3)-2-(acetylamino)-2-deoxy-beta-delta-galactopyranosyl-(1->4)]-O-beta-delta-galactopyranosyl-(1->4)-beta-delta-glucopyranosyl]-Ceramide
  • D-Galactosyl-1,3-beta-N-acetyl-D galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosyl-Nacylsphingosine
104443-62-1
Ganglioside GM1 (d18:1/24:0)
  • 1-O-[O-(N-Acetyl-a-neuraminosyl)-(2)-O-[O-b-D-galactopyranosyl-(1)-2-(acetylamino)-2-deoxy-b-D-galactopyranosyl-(1)]-O-b-D-galactopyranosyl-(1)-b-D-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-a-neuraminosyl)-(2->3)-O-[O-b-D galactopyranosyl-(1->3)-2-(acetylamino)-2-deoxy-b-D-galactopyranosyl-(1->4)]-O-b-D-galactopyranosyl-(1->4)-b-D-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-alpha-neuraminosyl)-(2)-O-[O-beta-delta-galactopyranosyl-(1)-2-(acetylamino)-2-deoxy-beta-delta-galactopyranosyl-(1)]-O-beta-delta-galactopyranosyl-(1)-beta-delta-glucopyranosyl]-Ceramide
  • 1-O-[O-(N-Acetyl-alpha-neuraminosyl)-(2->3)-O-[O-beta-D galactopyranosyl-(1->3)-2-(acetylamino)-2-deoxy-beta-delta-galactopyranosyl-(1->4)]-O-beta-delta-galactopyranosyl-(1->4)-beta-delta-glucopyranosyl]-Ceramide
  • D-Galactosyl-1,3-beta-N-acetyl-D galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosyl-Nacylsphingosine
104443-62-1
genes like me logo Genes that share compounds with ST3GAL1: view

Transcripts for ST3GAL1 Gene

Unigene Clusters for ST3GAL1 Gene

ST3 beta-galactoside alpha-2,3-sialyltransferase 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ST3GAL1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b · 9c · 9d ^ 10a · 10b · 10c ^ 11a · 11b ^ 12a · 12b ^ 13a ·
SP1: - - - - - - - - - - -
SP2: - - - - - - - - - -
SP3: - - - - - - - -
SP4: - - - - - - - - - - - - - - - - - -
SP5: - - - - - - - - - -
SP6: - - - - - -
SP7: - - - -
SP8: - - - - - - - - - - - -
SP9: - - -
SP10: -
SP11: -
SP12: - -
SP13:
SP14:

ExUns: 13b ^ 14 ^ 15 ^ 16a · 16b
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:

Relevant External Links for ST3GAL1 Gene

GeneLoc Exon Structure for
ST3GAL1
ECgene alternative splicing isoforms for
ST3GAL1

Expression for ST3GAL1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ST3GAL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ST3GAL1 Gene

This gene is overexpressed in Heart - Left Ventricle (x4.6).

Protein differential expression in normal tissues from HIPED for ST3GAL1 Gene

This gene is overexpressed in Lung (28.1), Placenta (12.1), Peripheral blood mononuclear cells (9.4), and Heart (7.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ST3GAL1 Gene



Protein tissue co-expression partners for ST3GAL1 Gene

NURSA nuclear receptor signaling pathways regulating expression of ST3GAL1 Gene:

ST3GAL1

SOURCE GeneReport for Unigene cluster for ST3GAL1 Gene:

Hs.374257

mRNA Expression by UniProt/SwissProt for ST3GAL1 Gene:

Q11201-SIA4A_HUMAN
Tissue specificity: Expressed in several tissues. Highest expression in lung, liver, skeletal muscle, kidney, pancreas, spleen and placenta.

Evidence on tissue expression from TISSUES for ST3GAL1 Gene

  • Skin(4)
  • Intestine(2)
  • Kidney(2)
  • Liver(2)
genes like me logo Genes that share expression patterns with ST3GAL1: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for ST3GAL1 Gene

Orthologs for ST3GAL1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ST3GAL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ST3GAL1 34 35
  • 98.92 (n)
dog
(Canis familiaris)
Mammalia ST3GAL1 34 35
  • 87.84 (n)
cow
(Bos Taurus)
Mammalia ST3GAL1 34 35
  • 86.65 (n)
rat
(Rattus norvegicus)
Mammalia St3gal1 34
  • 82.35 (n)
mouse
(Mus musculus)
Mammalia St3gal1 34 16 35
  • 81.9 (n)
oppossum
(Monodelphis domestica)
Mammalia ST3GAL1 35
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ST3GAL1 35
  • 66 (a)
OneToOne
chicken
(Gallus gallus)
Aves ST3GAL1 34 35
  • 67.16 (n)
lizard
(Anolis carolinensis)
Reptilia ST3GAL1 35
  • 66 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia st3gal1 34
  • 64.06 (n)
zebrafish
(Danio rerio)
Actinopterygii st3gal1l 35
  • 40 (a)
ManyToMany
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.6558 34
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4378 35
  • 38 (a)
OneToMany
Species where no ortholog for ST3GAL1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ST3GAL1 Gene

ENSEMBL:
Gene Tree for ST3GAL1 (if available)
TreeFam:
Gene Tree for ST3GAL1 (if available)

Paralogs for ST3GAL1 Gene

(7) SIMAP similar genes for ST3GAL1 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for ST3GAL1 Gene

genes like me logo Genes that share paralogs with ST3GAL1: view

Variants for ST3GAL1 Gene

Sequence variations from dbSNP and Humsavar for ST3GAL1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000018921 -- 133,564,214(+) ATGAT(C/G)ATGAA intron-variant
rs1000021203 -- 133,523,837(+) GGATG(C/T)TGTGA intron-variant
rs1000033946 -- 133,553,519(+) CAGGG(A/T)CTTGG intron-variant
rs1000054729 -- 133,532,572(+) TGATA(A/C)ATATT intron-variant
rs1000100694 -- 133,481,610(+) CCTGC(C/T)TCAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ST3GAL1 Gene

Variant ID Type Subtype PubMed ID
esv3335344 CNV insertion 20981092
esv3544244 CNV deletion 23714750
esv3618890 CNV loss 21293372
nsv1035043 CNV loss 25217958
nsv1115139 CNV deletion 24896259
nsv1128454 CNV deletion 24896259
nsv1137402 CNV deletion 24896259
nsv528683 CNV loss 19592680
nsv6404 CNV insertion 18451855
nsv6405 CNV deletion 18451855
nsv831464 CNV loss 17160897

Variation tolerance for ST3GAL1 Gene

Residual Variation Intolerance Score: 73.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.17; 51.81% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ST3GAL1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ST3GAL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ST3GAL1 Gene

Disorders for ST3GAL1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ST3GAL1 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
colorectal cancer
  • colorectal cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for ST3GAL1

Genetic Association Database (GAD)
ST3GAL1
Human Genome Epidemiology (HuGE) Navigator
ST3GAL1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ST3GAL1
genes like me logo Genes that share disorders with ST3GAL1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ST3GAL1 Gene

Publications for ST3GAL1 Gene

  1. Molecular cloning and expression of Galbeta1,3GalNAc alpha2, 3- sialyltransferase from human fetal liver. (PMID: 10504389) Shang J. … Jin C. (Eur. J. Biochem. 1999) 2 3 4 22 64
  2. Three genes that encode human beta-galactoside alpha 2,3- sialyltransferases. Structural analysis and chromosomal mapping studies. (PMID: 7655169) Chang M.-L. … Lau J.T.Y. (Glycobiology 1995) 2 3 4 22 64
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  4. Molecular genetics of successful smoking cessation: convergent genome-wide association study results. (PMID: 18519826) Uhl G.R. … Lerman C. (Arch. Gen. Psychiatry 2008) 3 46 64
  5. Family-based association study of lithium-related and other candidate genes in bipolar disorder. (PMID: 18180429) Perlis R.H. … Sklar P. (Arch. Gen. Psychiatry 2008) 3 22 64

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