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Aliases for ST20-MTHFS Gene

Aliases for ST20-MTHFS Gene

  • ST20-MTHFS Readthrough 2 3 5

External Ids for ST20-MTHFS Gene

Previous GeneCards Identifiers for ST20-MTHFS Gene

  • GC15U901328
  • GC15M080140

Summaries for ST20-MTHFS Gene

Entrez Gene Summary for ST20-MTHFS Gene

  • This locus represents naturally occurring read-through transcription between the neighboring suppressor of tumorigenicity 20 and 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) genes on chromosome 15. The read-through transcript produces a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Dec 2010]

GeneCards Summary for ST20-MTHFS Gene

ST20-MTHFS (ST20-MTHFS Readthrough) is a Protein Coding gene. Among its related pathways are Metabolism and One carbon pool by folate. An important paralog of this gene is MTHFS.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST20-MTHFS Gene

Genomics for ST20-MTHFS Gene

Regulatory Elements for ST20-MTHFS Gene

Enhancers for ST20-MTHFS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F079964 1.4 FANTOM5 ENCODE 13.8 -44.6 -44569 7.5 HDGF PKNOX1 WRNIP1 SIN3A YY1 ZNF207 FOS JUNB MIER2 REST BCL2A1 MTHFS ST20-MTHFS ST20 RNU6-667P LOC101929560 ZFAND6 GC15P079945
GH15F079973 0.9 FANTOM5 ENCODE 10.8 -50.1 -50065 0.8 MTA2 NFYB IKZF1 EED JUNB BCL2A1 ST20-MTHFS MTHFS ST20 ZFAND6 LOC100420205
GH15F079900 1.2 FANTOM5 ENCODE 6.1 +23.5 23477 0.3 SOX13 DRAP1 SAP130 DMAP1 ZNF644 RAD21 TEAD3 ETV6 CREM HOMEZ BCL2A1 RNU6-667P ST20-MTHFS ZFAND6 MTHFS ST20 GC15M079918
GH15F079960 1.3 FANTOM5 Ensembl ENCODE 4.7 -37.9 -37944 2.6 MAX RARA YY1 ZNF335 POLR2A ETV6 CREM GATAD2A HLF ZBED1 BCL2A1 RNU6-667P ZFAND6 ST20-MTHFS MTHFS ST20 GC15P079945
GH15F079872 1.1 FANTOM5 Ensembl ENCODE 3.5 +50.9 50907 1.1 CTCF MYC MTHFS ST20 BCL2A1 ZFAND6 ST20-MTHFS ENSG00000279394 GC15M079834
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ST20-MTHFS on UCSC Golden Path with GeneCards custom track

Promoters for ST20-MTHFS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000412048 354 2801 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 ZNF207 ZNF263 SP3 SP5

Genomic Location for ST20-MTHFS Gene

79,843,547 bp from pter
79,923,754 bp from pter
80,208 bases
Minus strand

Genomic View for ST20-MTHFS Gene

Genes around ST20-MTHFS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST20-MTHFS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST20-MTHFS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST20-MTHFS Gene

Proteins for ST20-MTHFS Gene

  • Protein details for ST20-MTHFS Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    5-formyltetrahydrofolate cyclo-ligase
    Protein Accession:

    Protein attributes for ST20-MTHFS Gene

    179 amino acids
    Molecular mass:
    20519 Da
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
    Quaternary structure:
    No Data Available
  • Protein details for ST20-MTHFS Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Protein ST20-MTHFS
    Protein Accession:

    Protein attributes for ST20-MTHFS Gene

    122 amino acids
    Molecular mass:
    14011 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ST20-MTHFS Gene

Post-translational modifications for ST20-MTHFS Gene

No Post-translational modifications

Other Protein References for ST20-MTHFS Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ST20-MTHFS Gene

Domains & Families for ST20-MTHFS Gene

Protein Domains for ST20-MTHFS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ST20-MTHFS: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ST20-MTHFS Gene

Function for ST20-MTHFS Gene

Gene Ontology (GO) - Molecular Function for ST20-MTHFS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005524 ATP binding IEA --
GO:0030272 5-formyltetrahydrofolate cyclo-ligase activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ST20-MTHFS: view

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ST20-MTHFS Gene

Localization for ST20-MTHFS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ST20-MTHFS Gene

Pathways & Interactions for ST20-MTHFS Gene

genes like me logo Genes that share pathways with ST20-MTHFS: view

Pathways by source for ST20-MTHFS Gene

2 KEGG pathways for ST20-MTHFS Gene

Interacting Proteins for ST20-MTHFS Gene

Gene Ontology (GO) - Biological Process for ST20-MTHFS Gene


No data available for SIGNOR curated interactions for ST20-MTHFS Gene

Transcripts for ST20-MTHFS Gene

mRNA/cDNA for ST20-MTHFS Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ST20-MTHFS Gene

No ASD Table

Relevant External Links for ST20-MTHFS Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ST20-MTHFS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ST20-MTHFS Gene

Protein differential expression in normal tissues from HIPED for ST20-MTHFS Gene

This gene is overexpressed in Liver (19.7), Peripheral blood mononuclear cells (12.1), and Gallbladder (6.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from PaxDb, MaxQB, and MOPED for ST20-MTHFS Gene

Protein tissue co-expression partners for ST20-MTHFS Gene

genes like me logo Genes that share expression patterns with ST20-MTHFS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ST20-MTHFS Gene

Orthologs for ST20-MTHFS Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ST20-MTHFS Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia MTHFS 35
  • 81 (a)
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 71 (a)
(Canis familiaris)
Mammalia -- 35
  • 70 (a)
(Mus musculus)
Mammalia Gm2382 35
  • 70 (a)
Mthfs 35
  • 70 (a)
(Bos Taurus)
Mammalia MTHFS 35
  • 69 (a)
(Monodelphis domestica)
Mammalia -- 35
  • 68 (a)
-- 35
  • 68 (a)
(Gallus gallus)
Aves MTHFS 35
  • 56 (a)
(Anolis carolinensis)
Reptilia -- 35
  • 67 (a)
(Danio rerio)
Actinopterygii MTHFS 35
  • 50 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG34424 35
  • 28 (a)
(Caenorhabditis elegans)
Secernentea Y106G6E.4 35
  • 31 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes FAU1 35
  • 24 (a)
Species where no ortholog for ST20-MTHFS was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for ST20-MTHFS Gene

Gene Tree for ST20-MTHFS (if available)
Gene Tree for ST20-MTHFS (if available)

Paralogs for ST20-MTHFS Gene

Paralogs for ST20-MTHFS Gene

genes like me logo Genes that share paralogs with ST20-MTHFS: view

Variants for ST20-MTHFS Gene

Sequence variations from dbSNP and Humsavar for ST20-MTHFS Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10083675 -- 79,866,090(+) TTTTG(G/T)TTTTT intron-variant
rs10162736 -- 79,843,314(+) AAGTT(C/G)AACAA downstream-variant-500B
rs10519247 -- 79,915,822(-) TTGGA(A/G)AAGCC intron-variant, upstream-variant-2KB
rs10519253 -- 79,844,120(-) GTAGC(A/T)AACAG nc-transcript-variant, utr-variant-3-prime
rs10519254 -- 79,843,375(-) TTGGT(C/G)TGAAA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for ST20-MTHFS Gene

Variant ID Type Subtype PubMed ID
esv3637011 CNV loss 21293372
nsv510406 OTHER sequence alteration 20534489
nsv833065 CNV loss 17160897
nsv833066 CNV loss 17160897
esv3637009 CNV loss 21293372
esv3637008 CNV loss 21293372
esv3581779 CNV loss 25503493
esv28440 CNV loss 19812545
esv2678719 CNV deletion 23128226
esv2672391 CNV deletion 23128226
esv2660680 CNV deletion 23128226
dgv155n21 CNV loss 19592680

Variation tolerance for ST20-MTHFS Gene

Residual Variation Intolerance Score: 79.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.09; 2.16% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ST20-MTHFS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ST20-MTHFS Gene

Disorders for ST20-MTHFS Gene

Relevant External Links for ST20-MTHFS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ST20-MTHFS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ST20-MTHFS Gene

Publications for ST20-MTHFS Gene

  1. Genome-wide association study of chronic periodontitis in a general German population. (PMID: 24024966) Teumer A. … Kocher T. (J. Clin. Periodontol. 2013) 3 64

Products for ST20-MTHFS Gene

Sources for ST20-MTHFS Gene

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